View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17542_high_9 (Length: 319)
Name: NF17542_high_9
Description: NF17542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17542_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 34167143 - 34166830
Alignment:
| Q |
1 |
tgcctaggacgcaacattttagtttgtacctttactgatgggtnnnnnnnncacatttatcaggttataatatcatcctaggtttgagtctaagtcgtcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34167143 |
tgcctaggacgcaacattttagtttgtacctttactgatgggtaaaaaaaacacatttatcaggttataatatcatcctaggtttgagtctaagtcgtcc |
34167044 |
T |
|
| Q |
101 |
ccgacaaactggcttaaatgctgaggattgtctaccctttataagcnnnnnnnnagtccatttctctagtaggatcacgacaaccttctaatttcactca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34167043 |
ccgacaaactggcttaaatgctgaggattgtctaccctttataagcttttttttagtccatttctctagtaggatcacgacaaccttctaatttcactca |
34166944 |
T |
|
| Q |
201 |
agaaataaattacgtcattggaaagtttaattagctaaaaattcataagttggacatactctcccagtgtagagctaaaagttccagactcttgcattct |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34166943 |
agaaataaattacgtcattggaaagtttaattagctaaaaattcataagttggacatactctcccagtgtagagctaaaagttccagactcttgcattct |
34166844 |
T |
|
| Q |
301 |
ctgttcttctctct |
314 |
Q |
| |
|
|||||||||||||| |
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| T |
34166843 |
ctgttcttctctct |
34166830 |
T |
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