View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17542_low_2 (Length: 250)
Name: NF17542_low_2
Description: NF17542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17542_low_2 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 7947441 - 7947208
Alignment:
| Q |
17 |
ttttgaaaataaagatgtagtaactacacagggtccatggaacatttattataatcttgttggatatctaagaaatacaatagattatttcaaaataaag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7947441 |
ttttgaaaataaagatgtagtaactacacagggtccatggaacatttattataatcttgttggatatctaagaaatacaatagattctttcaaaataaag |
7947342 |
T |
|
| Q |
117 |
attgttgattaattcaaaatatgagatacatcatgtaatgcatgcnnnnnnnctcttcacattaataaaagaagctcccgcatgtaccaggctttatctt |
216 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7947341 |
attgttgatttattcaaaatatgagatacatcatgtaatgcatgctttttttctcttcacattaataaaagaagctcccgcatgtaccaggctttatctt |
7947242 |
T |
|
| Q |
217 |
taagtcttccataaatcgagggttagaggaaatc |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
7947241 |
taagtcttccataaatcgagggttagaggaaatc |
7947208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 250
Target Start/End: Complemental strand, 7941723 - 7941657
Alignment:
| Q |
184 |
aaagaagctcccgcatgtaccaggctttatctttaagtcttccataaatcgagggttagaggaaatc |
250 |
Q |
| |
|
|||| |||||| ||| ||| ||||| | ||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
7941723 |
aaaggagctccggcaagtatcaggcctcatctttaagtcttttataaattgagggttagaggaaatc |
7941657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 6785631 - 6785685
Alignment:
| Q |
52 |
catggaacatttattataatcttgttggatatctaagaaatacaatagattattt |
106 |
Q |
| |
|
|||| |||||||||| ||||| ||||||||||||||||||| |||| | |||||| |
|
|
| T |
6785631 |
catgcaacatttattttaatcatgttggatatctaagaaatccaattgtttattt |
6785685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University