View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17543_high_18 (Length: 331)

Name: NF17543_high_18
Description: NF17543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17543_high_18
NF17543_high_18
[»] chr7 (14 HSPs)
chr7 (1-319)||(31439041-31439359)
chr7 (11-315)||(31604562-31604866)
chr7 (54-300)||(31532338-31532584)
chr7 (54-315)||(31540961-31541222)
chr7 (11-312)||(31618166-31618467)
chr7 (11-315)||(31594953-31595257)
chr7 (11-315)||(31614437-31614741)
chr7 (54-312)||(33305180-33305438)
chr7 (54-315)||(31575939-31576200)
chr7 (14-104)||(31585306-31585399)
chr7 (56-319)||(31608201-31608464)
chr7 (149-319)||(31585444-31585614)
chr7 (176-315)||(31572868-31573007)
chr7 (54-104)||(31573073-31573123)
[»] chr4 (1 HSPs)
chr4 (1-319)||(15063388-15063706)
[»] scaffold0394 (1 HSPs)
scaffold0394 (1-319)||(1828-2146)
[»] chr1 (1 HSPs)
chr1 (11-319)||(52174335-52174643)


Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 31439359 - 31439041
Alignment:
Q  1 cttctttacgatatcattttcttcttcggagattgttaaattatttgaaagagtattaccttgctcaagatccttatatatccaatctggaaagtacatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31439359 cttctttacgatatcattttcttcttcggagattgttaaattatttgaaagagtattaccttgctcaagatccttatatatccaatccggaaagtacatt 31439260  T
Q  101 tcagtcatatcagaccctctagtatcacgactctttctttctccagttatttcgagagtcaacatgccataactgtatacatcagacttagaagaaactc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31439259 tcagtcatatcagaccctctagtatcacgactctttctttctccggttatttcgagagtcaacatgccataactgtatacatcagacttagaagaaactc 31439160  T
Q  201 caccaaatgctcgattgaatacctcgggtgctatgaagcctatagttcctctcgcgccaagtagggaaacaacactctctttcttttgacatattttagc 300  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  31439159 caccaaatgctcgactgaatacctcgggtgctatgaagcctatagttcctcttgtgccaagtagggaaacaacactctctttcttttgacatattttagc 31439060  T
Q  301 tagaccaaaatcagatatt 319  Q
    |||||||||||||||||||    
T  31439059 tagaccaaaatcagatatt 31439041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 315
Target Start/End: Original strand, 31604562 - 31604866
Alignment:
Q  11 atatcattttcttcttcggagattgttaaattatttgaaagagtattaccttgctcaagatccttatatatccaatctggaaagtacatttcagtcatat 110  Q
    |||||||||||||| || |||| |||  ||  |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||   ||     
T  31604562 atatcattttcttcctccgagactgtcgaacaatttaaaagagtattaccttgctcaagatccttataaatccaatctggaaagtacatttcagaagtac 31604661  T
Q  111 cagaccctctagtatcacgactctttctttctccagttatttcgagagtcaacatgccataactgtatacatcagacttagaagaaactccaccaaatgc 210  Q
      ||||| | ||| ||     |||| ||| ||||  | ||||| ||| |||||||||||||||| ||||||||||| ||  ||||||||||||||||||     
T  31604662 atgacccgccagtgtcgtagttcttccttcctccgatcatttcaagaatcaacatgccataactatatacatcagatttgtaagaaactccaccaaatga 31604761  T
Q  211 tcgattgaatacctcgggtgctatgaagcctatagttcctctcgcgccaagtagggaaacaacactctctttcttttgacatattttagctagaccaaaa 310  Q
    || ||| ||| | || ||||| ||  | ||||| |||||||| || || | ||  || |||| ||| || |||||||| |||||||| ||||| ||||||    
T  31604762 tctattaaatgcttctggtgccatatatcctattgttcctcttgcccctaatattgacacaatactatccttcttttggcatattttcgctagtccaaaa 31604861  T
Q  311 tcaga 315  Q
    |||||    
T  31604862 tcaga 31604866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 54 - 300
Target Start/End: Original strand, 31532338 - 31532584
Alignment:
Q  54 tattaccttgctcaagatccttatatatccaatctggaaagtacatttcagtcatatcagaccctctagtatcacgactctttctttctccagttatttc 153  Q
    |||||||||| |||||||||||||| ||||| || ||||||||||||||||   ||   ||||||| ||| |||  | |||||||| ||||| | |||||    
T  31532338 tattaccttgttcaagatccttataaatccagtcaggaaagtacatttcagaagtacatgaccctccagtgtcataattctttcttcctccaatcatttc 31532437  T
Q  154 gagagtcaacatgccataactgtatacatcagacttagaagaaactccaccaaatgctcgattgaatacctcgggtgctatgaagcctatagttcctctc 253  Q
     ||| | ||||| |||||||||||||||||||||||   ||||||||||||| ||| |||| | || || || ||||||||| | ||||| ||||||||     
T  31532438 tagaattaacatcccataactgtatacatcagacttgtgagaaactccaccatatgttcgactaaacacttctggtgctatgtatcctatggttcctctt 31532537  T
Q  254 gcgccaagtagggaaacaacactctctttcttttgacatattttagc 300  Q
    | ||||||||  || |||| ||| || |||||||| |||||||||||    
T  31532538 gtgccaagtatagacacaatactgtcattcttttggcatattttagc 31532584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 54 - 315
Target Start/End: Original strand, 31540961 - 31541222
Alignment:
Q  54 tattaccttgctcaagatccttatatatccaatctggaaagtacatttcagtcatatcagaccctctagtatcacgactctttctttctccagttatttc 153  Q
    ||||| ||||||||||||||||||| ||||||||||||||  |||||||||   ||   ||||||| ||| |||  | |||||||| | |||   |||||    
T  31540961 tattagcttgctcaagatccttataaatccaatctggaaaacacatttcagaagtacatgaccctccagtgtcataattctttcttcccccaaccatttc 31541060  T
Q  154 gagagtcaacatgccataactgtatacatcagacttagaagaaactccaccaaatgctcgattgaatacctcgggtgctatgaagcctatagttcctctc 253  Q
     ||| | ||||| |||||||| |||||||||||||||  ||||||||||||| ||| |||  ||||||| || ||||||||  | ||||||||||||||     
T  31541061 tagaattaacataccataactatatacatcagacttatgagaaactccaccatatgttcggctgaatacttctggtgctatatatcctatagttcctctt 31541160  T
Q  254 gcgccaagtagggaaacaacactctctttcttttgacatattttagctagaccaaaatcaga 315  Q
    | ||||||||  || |||| ||| || ||| |||| |||| ||||||||| |||||||||||    
T  31541161 gtgccaagtaaagacacaatactatcattcctttggcatactttagctagtccaaaatcaga 31541222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 11 - 312
Target Start/End: Original strand, 31618166 - 31618467
Alignment:
Q  11 atatcattttcttcttcggagattgttaaattatttgaaagagtattaccttgctcaagatccttatatatccaatctggaaagtacatttcagtcatat 110  Q
    |||||||||||||| || ||||||||| ||  |||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||   ||     
T  31618166 atatcattttcttcctccgagattgttgaacaatttaaaagagtattcccttgctcaagatccttataaatccaatctggaaagtacatttcagaagtac 31618265  T
Q  111 cagaccctctagtatcacgactctttctttctccagttatttcgagagtcaacatgccataactgtatacatcagacttagaagaaactccaccaaatgc 210  Q
      |||||||  || ||     |||| ||| ||||  | ||||| ||| |||||||||||||||| |||||||||||  |  | |||||||||||||| ||    
T  31618266 atgaccctcccgtgtcgtagttcttccttcctccgatcatttcaagaatcaacatgccataactatatacatcagatctgtacgaaactccaccaaacgc 31618365  T
Q  211 tcgattgaatacctcgggtgctatgaagcctatagttcctctcgcgccaagtagggaaacaacactctctttcttttgacatattttagctagaccaaaa 310  Q
    || | | ||||  || ||||| ||| | |||||||||||||| || || | ||  || |||| ||| || ||| |||| |||||||||||||| ||||||    
T  31618366 tctactaaatatttctggtgccatgtatcctatagttcctcttgcccctaatattgacacaatactatccttcctttggcatattttagctagtccaaaa 31618465  T
Q  311 tc 312  Q
    ||    
T  31618466 tc 31618467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 11 - 315
Target Start/End: Original strand, 31594953 - 31595257
Alignment:
Q  11 atatcattttcttcttcggagattgttaaattatttgaaagagtattaccttgctcaagatccttatatatccaatctggaaagtacatttcagtcatat 110  Q
    |||||||||||||| || || ||||| |||  |||| |||||  |||||||||||||||||||||||| ||||| |||||||||||||||||||   ||     
T  31594953 atatcattttcttcctctgaaattgtcaaagaatttaaaagatcattaccttgctcaagatccttataaatccagtctggaaagtacatttcagaagtac 31595052  T
Q  111 cagaccctctagtatcacgactctttctttctccagttatttcgagagtcaacatgccataactgtatacatcagacttagaagaaactccaccaaatgc 210  Q
      ||||||| ||| | |    |||||||| ||||| | ||||| ||| ||||||| |||||||||||||||||||| ||  ||||||| |||||||||||    
T  31595053 acgaccctccagtttgatagttctttcttcctccaatcatttcaagaatcaacataccataactgtatacatcagatttgtaagaaacaccaccaaatgc 31595152  T
Q  211 tcgattgaatacctcgggtgctatgaagcctatagttcctctcgcgccaagtagggaaacaacactctctttcttttgacatattttagctagaccaaaa 310  Q
    ||   | ||||| || || || ||  | |||||||||||||| |  ||  |||  || |||| ||| || ||| ||||||||||||| ||||| ||||||    
T  31595153 tctgctaaatacttctggcgccatatatcctatagttcctcttgtccccggtattgacacaatactatcattcatttgacatatttttgctagtccaaaa 31595252  T
Q  311 tcaga 315  Q
    |||||    
T  31595253 tcaga 31595257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 11 - 315
Target Start/End: Original strand, 31614437 - 31614741
Alignment:
Q  11 atatcattttcttcttcggagattgttaaattatttgaaagagtattaccttgctcaagatccttatatatccaatctggaaagtacatttcagtcatat 110  Q
    |||||||||||||| || |||||||| |||  |||| ||||||| |||  ||||||||||| |||||| |||||||||||||||||||||||||   |      
T  31614437 atatcattttcttcctctgagattgtcaaacaatttaaaagagtgttattttgctcaagattcttataaatccaatctggaaagtacatttcagaagtgc 31614536  T
Q  111 cagaccctctagtatcacgactctttctttctccagttatttcgagagtcaacatgccataactgtatacatcagacttagaagaaactccaccaaatgc 210  Q
      ||||||| ||| |||    |||||||| ||||| | ||||| ||| ||||||| |||||||| ||||||||||| ||  |||||||||| ||||||||    
T  31614537 atgaccctccagtgtcatagttctttcttcctccaatcatttcaagaatcaacattccataactatatacatcagatttgtaagaaactccgccaaatgc 31614636  T
Q  211 tcgattgaatacctcgggtgctatgaagcctatagttcctctcgcgccaagtagggaaacaacactctctttcttttgacatattttagctagaccaaaa 310  Q
    ||   | ||||| || ||||| ||  | |||||||||||||| |  || | ||  || |||| ||| || |||||||| |||||||| ||||| ||||||    
T  31614637 tctgctaaatacttctggtgccatatatcctatagttcctcttgtacctaatattgacacaatactatccttcttttggcatattttcgctagtccaaaa 31614736  T
Q  311 tcaga 315  Q
    |||||    
T  31614737 tcaga 31614741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 54 - 312
Target Start/End: Complemental strand, 33305438 - 33305180
Alignment:
Q  54 tattaccttgctcaagatccttatatatccaatctggaaagtacatttcagtcatatcagaccctctagtatcacgactctttctttctccagttatttc 153  Q
    |||||| | |||||||||||||||| |||||||||| |||||||||||| |   ||   |||||||  || |||  | |||||||| | ||  | |||||    
T  33305438 tattacttagctcaagatccttataaatccaatctgaaaagtacatttccgatgtacatgaccctcccgtgtcataattctttcttcccccgatcatttc 33305339  T
Q  154 gagagtcaacatgccataactgtatacatcagacttagaagaaactccaccaaatgctcgattgaatacctcgggtgctatgaagcctatagttcctctc 253  Q
     ||  | ||||| ||||||||||||||||| ||||||  ||||||||||||||||| |||| | ||||| || ||||||||| | ||||||||||||||     
T  33305338 tagtattaacataccataactgtatacatcggacttatgagaaactccaccaaatgttcgactaaatacttccggtgctatgtatcctatagttcctctt 33305239  T
Q  254 gcgccaagtagggaaacaacactctctttcttttgacatattttagctagaccaaaatc 312  Q
    |  ||||||| ||| ||||  || || ||| |||||||||||| |||||| ||||||||    
T  33305238 gtaccaagtatggatacaatgctatccttcctttgacatatttgagctagtccaaaatc 33305180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 54 - 315
Target Start/End: Original strand, 31575939 - 31576200
Alignment:
Q  54 tattaccttgctcaagatccttatatatccaatctggaaagtacatttcagtcatatcagaccctctagtatcacgactctttctttctccagttatttc 153  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||| |   ||   ||||||| ||| |||    |||| ||| ||||  | |||||    
T  31575939 tattaccttgctcaagatccttataaatccaatctggaaaatacatttccggagtacacgaccctccagtgtcatagttcttccttcctccgatcatttc 31576038  T
Q  154 gagagtcaacatgccataactgtatacatcagacttagaagaaactccaccaaatgctcgattgaatacctcgggtgctatgaagcctatagttcctctc 253  Q
     ||| |||||||||||||||| ||||||||||| ||  |||||||||||||||||| || ||| ||| | || ||||| ||  | ||||| ||||||||     
T  31576039 aagaatcaacatgccataactatatacatcagatttgtaagaaactccaccaaatgatctattaaatgcttctggtgccatatatcctattgttcctctt 31576138  T
Q  254 gcgccaagtagggaaacaacactctctttcttttgacatattttagctagaccaaaatcaga 315  Q
    || || | ||  || |||| ||| || |||||||| |||||||| ||||| |||||||||||    
T  31576139 gcccctaatattgacacaatactatccttcttttggcatattttcgctagtccaaaatcaga 31576200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 31585306 - 31585399
Alignment:
Q  14 tcattttcttcttcggagattgttaaattatttgaaagagt---attaccttgctcaagatccttatatatccaatctggaaagtacatttcag 104  Q
    ||||||||||||||||||||||| |||  |||| ||||||    |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  31585306 tcattttcttcttcggagattgtcaaacaatttaaaagaggttcattaccttgctcaagatccttataaatccaatctggaaagtacatttcag 31585399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 56 - 319
Target Start/End: Original strand, 31608201 - 31608464
Alignment:
Q  56 ttaccttgctcaagatccttatatatccaatctggaaagtacatttcagtcatatcagaccctctagtatcacgactctttctttctccagttatttcga 155  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||   ||   ||||| | ||| ||     |||| ||| ||||| | ||||| |    
T  31608201 ttaccttgctcaagatccttataaatccagtctggaaagtacatttcagaagtacatgacccgccagtgtcgtagttcttccttcctccaatcatttcaa 31608300  T
Q  156 gagtcaacatgccataactgtatacatcagacttagaagaaactccaccaaatgctcgattgaatacctcgggtgctatgaagcctatagttcctctcgc 255  Q
    || |||||||||||||||| ||||||||||| ||  ||||||| ||||||||||||| | | ||||| || || || ||  | |||||||||||||  |     
T  31608301 gaatcaacatgccataactatatacatcagatttgtaagaaacaccaccaaatgctctactaaatacttctggcgccatatatcctatagttcctcgtgt 31608400  T
Q  256 gccaagtagggaaacaacactctctttcttttgacatattttagctagaccaaaatcagatatt 319  Q
     || | ||  || |||| ||| || ||| |||||||||||||||| || |||||||||||||||    
T  31608401 ccccaatattgacacaatactgtccttcctttgacatattttagcaagtccaaaatcagatatt 31608464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 149 - 319
Target Start/End: Original strand, 31585444 - 31585614
Alignment:
Q  149 atttcgagagtcaacatgccataactgtatacatcagacttagaagaaactccaccaaatgctcgattgaatacctcgggtgctatgaagcctatagttc 248  Q
    ||||| ||| ||| |||||||||||| || |||||||||||   ||||||||||||||| |||| | ||||||  || ||||| ||  | ||||||||||    
T  31585444 atttctagaatcagcatgccataactatacacatcagacttgtgagaaactccaccaaaggctctaatgaatatttctggtgccatatatcctatagttc 31585543  T
Q  249 ctctcgcgccaagtagggaaacaacactctctttcttttgacatattttagctagaccaaaatcagatatt 319  Q
    |||| || || || |  || |||  ||| || |||||| | |||||||| ||||| |||||||||||||||    
T  31585544 ctcttgcccctagcattgacacagtactatccttctttcggcatatttttgctagtccaaaatcagatatt 31585614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 315
Target Start/End: Complemental strand, 31573007 - 31572868
Alignment:
Q  176 tatacatcagacttagaagaaactccaccaaatgctcgattgaatacctcgggtgctatgaagcctatagttcctctcgcgccaagtagggaaacaacac 275  Q
    ||||||||||||||   |||||||||||||||  |||   | ||||| || || |||||| | ||||||||||| || | |||||||| ||| |||| ||    
T  31573007 tatacatcagacttgtgagaaactccaccaaacactctgctaaatacttcaggagctatgtatcctatagttccccttgtgccaagtatggacacaatac 31572908  T
Q  276 tctctttcttttgacatattttagctagaccaaaatcaga 315  Q
    | || ||| |||| ||||||| |||||| |||||||||||    
T  31572907 tatccttcctttggcatatttgagctagtccaaaatcaga 31572868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 31573123 - 31573073
Alignment:
Q  54 tattaccttgctcaagatccttatatatccaatctggaaagtacatttcag 104  Q
    |||||| | |||||||||| ||||| |||||||||||||||||||||||||    
T  31573123 tattacttagctcaagatcattataaatccaatctggaaagtacatttcag 31573073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 15063706 - 15063388
Alignment:
Q  1 cttctttacgatatcattttcttcttcggagattgttaaattatttgaaagagtattaccttgctcaagatccttatatatccaatctggaaagtacatt 100  Q
    ||||||||  ||||||||||||||||| |||||||  ||| ||||| |||| | |||||||||||||||||||||| |||||||||| ||||||||   |    
T  15063706 cttctttagcatatcattttcttcttctgagattgccaaactatttaaaagggaattaccttgctcaagatccttaaatatccaatccggaaagtatgct 15063607  T
Q  101 tcagtcatatcagaccctctagtatcacgactctttctttctccagttatttcgagagtcaacatgccataactgtatacatcagacttagaagaaactc 200  Q
    || ||  ||| |||||| | ||| |||  | ||||| || |||| || ||||| ||| |||||||||||||||||||||||||||||||||||||||||     
T  15063606 tcggttgtatgagacccgccagtgtcataattcttttttcctccggtcatttcaagaatcaacatgccataactgtatacatcagacttagaagaaactg 15063507  T
Q  201 caccaaatgctcgattgaatacctcgggtgctatgaagcctatagttcctctcgcgccaagtagggaaacaacactctctttcttttgacatattttagc 300  Q
    ||||||| |||||| | ||||| || |||| |||| |||||||||||||||| |  ||||| | ||| ||||||||||||||||||||||||||||||||    
T  15063506 caccaaaagctcgactaaatacttccggtgatatgtagcctatagttcctcttgtcccaagcatggacacaacactctctttcttttgacatattttagc 15063407  T
Q  301 tagaccaaaatcagatatt 319  Q
     ||||||||||||||||||    
T  15063406 aagaccaaaatcagatatt 15063388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 1828 - 2146
Alignment:
Q  1 cttctttacgatatcattttcttcttcggagattgttaaattatttgaaagagtattaccttgctcaagatccttatatatccaatctggaaagtacatt 100  Q
    ||||||||  ||||||||||||||||| |||||||  | | ||||| |||||| |||||||||||||||||||||| |||||||||| | ||||||  ||    
T  1828 cttctttagcatatcattttcttcttctgagattgccatactatttaaaagagaattaccttgctcaagatccttaaatatccaatccgaaaagtatgtt 1927  T
Q  101 tcagtcatatcagaccctctagtatcacgactctttctttctccagttatttcgagagtcaacatgccataactgtatacatcagacttagaagaaactc 200  Q
    || |    |  |||||| | ||| |||  | ||||| || |||| || ||||| ||| |||||||||||||||||||||||||||||||||||||||||     
T  1928 tcggctgcaagagacccgccagtgtcataattcttttttcctccggtcatttcaagaatcaacatgccataactgtatacatcagacttagaagaaactg 2027  T
Q  201 caccaaatgctcgattgaatacctcgggtgctatgaagcctatagttcctctcgcgccaagtagggaaacaacactctctttcttttgacatattttagc 300  Q
    ||||||| |||||| | ||||| || |||| |||| |||||||||||||||| |  ||||| | ||| ||||||||||||||||||||||||||||||||    
T  2028 caccaaaagctcgactaaatacttccggtgatatgtagcctatagttcctcttgtcccaagcatggacacaacactctctttcttttgacatattttagc 2127  T
Q  301 tagaccaaaatcagatatt 319  Q
     ||||||||||||||||||    
T  2128 aagaccaaaatcagatatt 2146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 11 - 319
Target Start/End: Complemental strand, 52174643 - 52174335
Alignment:
Q  11 atatcattttcttcttcggagattgttaaattatttgaaagagtattaccttgctcaagatccttatatatccaatctggaaagtacatttcagtcatat 110  Q
    |||||||||||||| || |||||||| |||  ||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||| |   ||     
T  52174643 atatcattttcttcctctgagattgtcaaacaatttgaaagagtatttccttgctcaagatccttataaatccagtctggaaagtacatttctgaagtac 52174544  T
Q  111 cagaccctctagtatcacgactctttctttctccagttatttcgagagtcaacatgccataactgtatacatcagacttagaagaaactccaccaaatgc 210  Q
      ||||||| ||| |||    |||||||| ||||| | ||||| ||| ||||||||||||||||||||| |||||| ||  ||||||| |||||||||||    
T  52174543 atgaccctccagtgtcatagttctttcttcctccaatcatttcaagaatcaacatgccataactgtatatatcagatttgtaagaaacaccaccaaatgc 52174444  T
Q  211 tcgattgaatacctcgggtgctatgaagcctatagttcctctcgcgccaagtagggaaacaacactctctttcttttgacatattttagctagaccaaaa 310  Q
    || | |  |||| || || || ||  | |||||||||||||| | ||||||||  || |||||||| || ||| |||| |||||||| ||||| || |||    
T  52174443 tctactatatacttctggcgccatatatcctatagttcctcttgtgccaagtattgacacaacactatccttcctttggcatatttttgctagtccgaaa 52174344  T
Q  311 tcagatatt 319  Q
    |||||||||    
T  52174343 tcagatatt 52174335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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