View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17543_high_2 (Length: 760)
Name: NF17543_high_2
Description: NF17543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17543_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 435; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 13 - 530
Target Start/End: Original strand, 22756352 - 22756863
Alignment:
| Q |
13 |
cagagacacatagttgtgacacaacactaagaataaaatattgaaaaacaaaagaaggaagaagacatagtcttttgtattataaaatggacacaaacca |
112 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22756352 |
cagaaacacatagttgtgacacaacactaagaataaaatattgtaaaacaaaagaaggaagaagacatagtcttttgtattataaaatggacacaaacca |
22756451 |
T |
|
| Q |
113 |
aagaagctgttatgtattgtgattcacagattccaacaaacgccgtttccttacaaaagagagagagtgtgtttctgtctgaaaggttctgtaacgtttg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22756452 |
aagaagctgttatgtattgtgattcacagattccaacaaacgccgtttccttacaaaagagagagagtgtgtttctgtctgaaaggttctgtaacgtttg |
22756551 |
T |
|
| Q |
213 |
cagcagctttcataacagacatgatttcaaaagctgtttatattgtctctcataaagcttaatcattcatctttcaattgtgaagccagtacnnnnnnnn |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
22756552 |
cagcagctttcataacagacatgatttcaaaagcagcttatattgtctctcataaagcttaatcattcatcattcaattgtgaaaccagtac------at |
22756645 |
T |
|
| Q |
313 |
nnnnnnnnnnttaagtactatatagtaatagtaatgatgagttatatttgatcaaagtggtgaaaaagtgaaaaggtttttgacttgcaatgatgatgaa |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22756646 |
gatgatgatgttaagtactatatagtaatagtaatgatgagttatatttgatcaaagtggtgaaaaagtgaaaaggtttttgacttgcaatgatgatgaa |
22756745 |
T |
|
| Q |
413 |
taatggtgaagaagatgaactctatgaacagttatggaaggcttgtgctggtcctcatgttgaagttcctcgtgctggacaaagagttttctattttcct |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22756746 |
taatggtgaagaagatgaactctatgaacagttatggaaggcttgtgctggtcctcatgttgaagttcctcgtgctggacaaagagttttctattttcct |
22756845 |
T |
|
| Q |
513 |
caaggacacatggaacaa |
530 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
22756846 |
caaggacacatggaacaa |
22756863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 589 - 746
Target Start/End: Original strand, 22756928 - 22757083
Alignment:
| Q |
589 |
ttaagatgcttggaatttggatatatgcttgattcta-ttttttgttttggttaaggaatttgnnnnnnnnnngttcttactttataagtttttgtggat |
687 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
22756928 |
ttaagatgctgggaatttggatatatgcttgattctaattttttgttttggttaaggaatttgttttttt---gttcttactttataagtttttgtggat |
22757024 |
T |
|
| Q |
688 |
atgtagttagaagtatcaacaaatcaggaactaaatcagaggattccattgttcaaact |
746 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22757025 |
gtgtagttagaagtatcaacaaatcaggaactaaatcagaggattccattgttcaaact |
22757083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 471 - 530
Target Start/End: Complemental strand, 7077642 - 7077583
Alignment:
| Q |
471 |
gttgaagttcctcgtgctggacaaagagttttctattttcctcaaggacacatggaacaa |
530 |
Q |
| |
|
||||| |||||| ||| ||| ||||| ||||||||||| || |||||||||||||||||| |
|
|
| T |
7077642 |
gttgatgttccttgtgttggtcaaagtgttttctatttcccacaaggacacatggaacaa |
7077583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University