View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17543_high_25 (Length: 268)
Name: NF17543_high_25
Description: NF17543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17543_high_25 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 16 - 267
Target Start/End: Original strand, 2738153 - 2738404
Alignment:
| Q |
16 |
accaagaacaccaatttctccggcaggttcttcaagttcaccatcctcgtggtttaggaaatcgcctacctgtaatggaagcgacttttctcgtgttagg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2738153 |
accaagaacaccaatttctccggcaggttcttcaagttcaccatcctcgtggtttaggaaatcgcctacctgtaatggaagcgacttttctcgtgttagg |
2738252 |
T |
|
| Q |
116 |
ggaaaaagccaaaggtcacgtgtgggtcgcagcaaacatcatcatcatcgtcaatcacaatccgctgattttagctacgacccttctagttatgcgctca |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2738253 |
ggaaaaagccaaaggtcacgtgtgggtcgcagcaaacatcatcatcatcgtcaatcacaatccgctgattttagctacgacccttctagttatgcgctca |
2738352 |
T |
|
| Q |
216 |
atttcgaaaatgaaactgcccaagaagatattccaattatgaattttagctc |
267 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2738353 |
attttgaaaatgaaactgcccaagaagatattccaattatgaattttagctc |
2738404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University