View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17543_high_26 (Length: 249)
Name: NF17543_high_26
Description: NF17543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17543_high_26 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 40725132 - 40724891
Alignment:
| Q |
1 |
ttgccaaaatcacggggaaattgctttacaggtcctcatttttgctcaaaagtcccccaatttatcagaatgtatcttcccgtggaacaaatctattggg |
100 |
Q |
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| T |
40725132 |
ttgccaaaatcacggggaaattgctttacaggtcctcatttttgctcaaaagtcccccaatttatcagaatgtatcttcccgtggaacaaatctattggg |
40725033 |
T |
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| Q |
101 |
agatgtgttctgattagcttaccaaacatacaagtagaaacatcctagtgttctgcttttgaagctagctctgaaattaaacgtaaaccaaacannnnnn |
200 |
Q |
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| T |
40725032 |
aaatgtgttctgattggcttaccaaacatacaagtagaaacatcctagtgttctgcttttgaagctagctctgaaattaaacgtaaaccaaacatttttt |
40724933 |
T |
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| Q |
201 |
nnnncaaggacttctttgaattaaaagttagatgcccctttg |
242 |
Q |
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| T |
40724932 |
ttttcaaggacttctttgaattaaaagttagatgcccctttg |
40724891 |
T |
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