View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17543_high_28 (Length: 238)
Name: NF17543_high_28
Description: NF17543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17543_high_28 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 40725563 - 40725343
Alignment:
| Q |
17 |
aattgggagggagaagagcacagtagctgagctagcaagccaattttccgaatcaattggtttacagaggccgccttctctcttccgaaaaactgcacta |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40725563 |
aattgggagggagaagagcacagtagctgagctagcaagccaattttccgaatcaattggtttacagaggccgccttctctcttccgaaaaactgcacta |
40725464 |
T |
|
| Q |
117 |
aaaatgggtttgaaagacattcctggcattagaattcgtagatagctcgtttgtacattnnnnnnnnncactgaaataagatttgtaagcatcttgtgtt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
40725463 |
aaaatgggtttgaaagacattcctggcattagaattcgtagatagctcgtttgtacatt-aaaaaaaacactgaaataagatttgtaagcatcttgtgtt |
40725365 |
T |
|
| Q |
217 |
gcattttataatgcgagaagtt |
238 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
40725364 |
gcattttataatgcgagaagtt |
40725343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University