View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17543_high_4 (Length: 668)

Name: NF17543_high_4
Description: NF17543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17543_high_4
NF17543_high_4
[»] chr5 (10 HSPs)
chr5 (1-609)||(36202587-36203197)
chr5 (157-335)||(29006218-29006398)
chr5 (145-264)||(9851621-9851740)
chr5 (175-331)||(11042983-11043139)
chr5 (194-248)||(15205202-15205256)
chr5 (5-142)||(9851458-9851594)
chr5 (618-650)||(36202538-36202570)
chr5 (17-142)||(29006450-29006575)
chr5 (154-187)||(28270773-28270806)
chr5 (231-333)||(28274093-28274197)
[»] chr8 (3 HSPs)
chr8 (165-339)||(12729135-12729309)
chr8 (144-333)||(28696261-28696450)
chr8 (1-154)||(12729344-12729496)
[»] chr3 (10 HSPs)
chr3 (145-334)||(52653523-52653712)
chr3 (194-334)||(50914636-50914776)
chr3 (1-153)||(52653728-52653879)
chr3 (1-133)||(33709804-33709935)
chr3 (145-331)||(33709572-33709752)
chr3 (1-154)||(40574324-40574477)
chr3 (170-265)||(16729628-16729721)
chr3 (287-336)||(23686022-23686071)
chr3 (287-336)||(24058259-24058308)
chr3 (261-333)||(2257449-2257521)
[»] chr2 (4 HSPs)
chr2 (161-336)||(34681294-34681469)
chr2 (155-314)||(14219075-14219233)
chr2 (156-220)||(14891583-14891647)
chr2 (6-82)||(34681118-34681195)
[»] chr4 (10 HSPs)
chr4 (144-334)||(24129520-24129710)
chr4 (144-328)||(48780039-48780222)
chr4 (161-300)||(1516526-1516664)
chr4 (167-333)||(20251147-20251312)
chr4 (153-304)||(1494959-1495110)
chr4 (240-333)||(122829-122922)
chr4 (169-243)||(1533060-1533134)
chr4 (165-231)||(46324378-46324444)
chr4 (17-77)||(20251439-20251500)
chr4 (257-304)||(1533134-1533180)
[»] chr7 (7 HSPs)
chr7 (153-328)||(12239809-12239983)
chr7 (146-340)||(1840394-1840589)
chr7 (153-315)||(24870206-24870367)
chr7 (1-150)||(12239634-12239782)
chr7 (153-228)||(1829807-1829883)
chr7 (206-278)||(24533212-24533284)
chr7 (145-305)||(34091651-34091806)
[»] chr6 (3 HSPs)
chr6 (145-331)||(28612324-28612508)
chr6 (17-77)||(11931984-11932044)
chr6 (1-148)||(28612156-28612303)
[»] scaffold0007 (3 HSPs)
scaffold0007 (144-335)||(217508-217689)
scaffold0007 (156-328)||(215646-215816)
scaffold0007 (7-148)||(217708-217849)
[»] chr1 (8 HSPs)
chr1 (1-155)||(49053745-49053899)
chr1 (161-334)||(49053554-49053713)
chr1 (161-335)||(49061133-49061293)
chr1 (1-155)||(49061325-49061479)
chr1 (157-272)||(17458230-17458345)
chr1 (156-318)||(50059269-50059430)
chr1 (145-219)||(10917398-10917470)
chr1 (145-192)||(52282180-52282226)
[»] scaffold0050 (1 HSPs)
scaffold0050 (577-609)||(61347-61379)


Alignment Details
Target: chr5 (Bit Score: 492; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 1 - 609
Target Start/End: Complemental strand, 36203197 - 36202587
Alignment:
Q  1 tgacgtgacttgcacgttcacatcaagtgtatcgacaatggtagcttacaaaataaagttctgacaaattctctcgtacacctaaagaagagaacgaata 100  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  36203197 tgacgtgacttgcacgttcacatcaagtgtatctgcaatggtagcttacaaaataaagttctgacaaattctctcgtacac-taaagaagagaacgaata 36203099  T
Q  101 atttagtataattatcggcagaatttagactcaaaacaatgtaattttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaaga 200  Q
    ||||||||||||| ||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36203098 atttagtataattttcggcagaatttagactcacaccaatgtgattttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaaga 36202999  T
Q  201 gaaataaccctttaaaagagtttgttcatgaatgattacattgattcagttgtcaagcattacaccttttctctaaaaggtttctttttaaccattgcaa 300  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  36202998 gaaataaccctttaaaagagtttgttcatgaatggttacattgattcaattgtcaagcattacaccttttctctaaaaggtctctttttaaccattgcaa 36202899  T
Q  301 cttttgaaatatattttgaaaatttctctcacaattaatacaccaatgttcatgtgtctgtttgtacaattttcttatgcgttcaattgcatataaagga 400  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||| ||||||||||    
T  36202898 cttttcaaatatattttaaaaatttctctcacaattaatacaccaatgttcatgtgtctggttgtacgattttcttatgtgttcaattgtatataaagga 36202799  T
Q  401 gatgtcatttctgtgttgccaagaacaaacggctaaaatgatgataacaactttgtggcgagtatatttaaacggttgctatctttcagatgttagtttt 500  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  36202798 gatgtcatttctgtgttgccaagaacaaacggctaaaaagatgataacaactttgtggcaagtatatttaaacggttgctatctttcagatgttagtttt 36202699  T
Q  501 gtc---nnnnnnnnnntctttcatgttggtagtttttctctttcttcttcgtagcacttcttatatgagagaagtagagttgtttggttatataattcca 597  Q
    |||             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36202698 gtcaaaaaaaaaaaaatctttcatgttggtagtttttctctttcttcttcgtagcacttcttatatgagagaagtagagttgtttggttatataattcca 36202599  T
Q  598 ttttatcttctt 609  Q
    ||||||||||||    
T  36202598 ttttatcttctt 36202587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 157 - 335
Target Start/End: Complemental strand, 29006398 - 29006218
Alignment:
Q  157 aaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattcagttgtcaa 256  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||| |||||||| |||| | || ||    
T  29006398 aaagtgtctctatttatagagaaacttatgtcatttggtgaagggaaacaaccctttaaaagattttgttcatgaatggttacattgcttcaatcgtaaa 29006299  T
Q  257 gcattacaccttttct---ctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaat 335  Q
     |||||||| |||| |   ||||||| | |||||| ||  |||||||||||| || ||||||||| ||||||||||||||||    
T  29006298 acattacacttttttttttctaaaagatctctttt-aattattgcaacttttcaattatattttggaaatttctctcacaat 29006218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 145 - 264
Target Start/End: Original strand, 9851621 - 9851740
Alignment:
Q  145 ttttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattga 244  Q
    ||||||| ||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||| ||| | |||||||||| ||||||| | | ||||     
T  9851621 ttttctgcctccaaaatgtctctatttacagagaaacttatgtcttttggtgaagagaaataaccatttgacagagtttgtttatgaatggtcagattgc 9851720  T
Q  245 ttcagttgtcaagcattaca 264  Q
    |||| |||||||||| ||||    
T  9851721 ttcaattgtcaagcaataca 9851740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 175 - 331
Target Start/End: Original strand, 11042983 - 11043139
Alignment:
Q  175 gagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattcagttgtcaagcattacaccttttctct 274  Q
    |||||||| ||||| ||||||| ||| ||  |||||||| ||||||||||||||||||||  || ||||||| | | | ||| |||||||||||||||||    
T  11042983 gagaaactcatgtcctttggtgtagataatcaaccctttgaaagagtttgttcatgaatggctagattgattaaatggacaaacattacaccttttctct 11043082  T
Q  275 aaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctctca 331  Q
    ||||| | | | |||||||  || ||||||| |||||||||||||||||||| ||||    
T  11043083 aaaagatctttatttaaccgatgaaacttttcaaatatattttgaaaatttcactca 11043139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 248
Target Start/End: Complemental strand, 15205256 - 15205202
Alignment:
Q  194 gtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattca 248  Q
    ||||| |||||||||| |||  |||||||||||||||||||||||||||| ||||    
T  15205256 gtgaatagaaataaccatttgtaagagtttgttcatgaatgattacattgcttca 15205202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 142
Target Start/End: Original strand, 9851458 - 9851594
Alignment:
Q  5 gtgacttgcacgttcacatcaagtgtatcgacaatggtagcttacaaaataaagttctgacaaattctctcgtacacctaaagaagagaacgaataattt 104  Q
    |||| |||||| |||||| |||| ||||||||||||||   ||||| ||||||||| || || ||||||| || || ||| |||| |||| || | ||||    
T  9851458 gtgatttgcacattcacaccaagcgtatcgacaatggtgttttacagaataaagttttgtcacattctcttgtgca-ctagagaaaagaaagactgattt 9851556  T
Q  105 agtataattatcggcagaatttagactcaaaacaatgt 142  Q
    ||||| ||| | |||||||||| |||||| || |||||    
T  9851557 agtattatttttggcagaattttgactcacaataatgt 9851594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 618 - 650
Target Start/End: Complemental strand, 36202570 - 36202538
Alignment:
Q  618 tcagtaaaaccaaaaacagatgaatctaaaagc 650  Q
    |||||||||||||||||||||||||||||||||    
T  36202570 tcagtaaaaccaaaaacagatgaatctaaaagc 36202538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 29006575 - 29006450
Alignment:
Q  17 ttcacatcaagtgtatcgacaatggtagctt-acaaaataaagttctgacaaattctctcgtacacctaaagaagagaacgaataatttagtataattat 115  Q
    |||||| |||| |||||| ||||| ||| || ||| |||||||||||| ||| || |||||| ||| || | || |||| |||| ||||||||||||| |    
T  29006575 ttcacaccaagcgtatcgtcaatgttagttttacagaataaagttctgtcaacttatctcgtgcac-tagaaaaaagaatgaatgatttagtataatttt 29006477  T
Q  116 cggcagaatttagactcaaaacaatgt 142  Q
      |||||||||||||||| || |||||    
T  29006476 tagcagaatttagactcacaagaatgt 29006450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 187
Target Start/End: Original strand, 28270773 - 28270806
Alignment:
Q  154 tccaaagtgtctctatttatagagaaacttatgt 187  Q
    |||||||| |||||||||||||||||||||||||    
T  28270773 tccaaagtatctctatttatagagaaacttatgt 28270806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 333
Target Start/End: Original strand, 28274093 - 28274197
Alignment:
Q  231 aatgattacattgattcagttgtcaagcattacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaa--tatattttgaaaatttctc 328  Q
    |||| |||||||| |||| | |||||||| |||| | |||| ||||||||||  | || |||||||||||||||  |||  ||||||||| || ||||||    
T  28274093 aatggttacattgtttcaatagtcaagcaatacatcgtttcactaaaaggttcatattcaaccattgcaactttccaaatttatattttggaagtttctc 28274192  T
Q  329 tcaca 333  Q
    |||||    
T  28274193 tcaca 28274197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 2e-48; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 165 - 339
Target Start/End: Complemental strand, 12729309 - 12729135
Alignment:
Q  165 tctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattcagttgtcaagcattaca 264  Q
    |||||||| ||||||| ||||||| | ||||||||||||| ||| ||||| ||||||||| ||||||||| ||| |||| |||| ||||| |||||||||    
T  12729309 tctatttacagagaaatttatgtcctgtggtgaagagaaacaactctttagaagagtttgctcatgaatggttatattgcttcaattgtcgagcattaca 12729210  T
Q  265 ccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaattaat 339  Q
    ||||||||||||||||| ||| ||||||||||||||||||  |||||||||||| ||||||||||||||| ||||    
T  12729209 ccttttctctaaaaggtctctatttaaccattgcaactttccaaatatattttggaaatttctctcacaaataat 12729135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 144 - 333
Target Start/End: Original strand, 28696261 - 28696450
Alignment:
Q  144 attttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattg 243  Q
    ||||||||  |||||||||||||||||||| |||||||||||||  ||||||||||||||| | ||||||| ||||||||||||||||||| ||||||||    
T  28696261 attttctgcatccaaagtgtctctatttatggagaaacttatgttctttggtgaagagaaacatccctttagaagagtttgttcatgaatggttacattg 28696360  T
Q  244 attcagttgtcaagcattacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctctcaca 333  Q
     |||| |||| ||||||||||| ||||||||||||| | ||| |||| ||||||||||||||   | ||||||| |||||| ||||||||    
T  28696361 cttcaattgttaagcattacacattttctctaaaagatctctatttacccattgcaactttttcgaaatattttaaaaattactctcaca 28696450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 12729496 - 12729344
Alignment:
Q  1 tgacgtgacttgcacgttcacatcaagtgtatcgacaatggtagcttacaaaataaagttctgacaaattctctcgtacacctaaagaagagaacgaata 100  Q
    |||| |||||||||| |||||| ||||  |||||||||| |||| ||||  |||||||||||| ||| ||||||||| ||| || |||| |||| ||||     
T  12729496 tgacatgacttgcacattcacaccaagcatatcgacaattgtagtttactgaataaagttctgtcaatttctctcgtgcac-tagagaaaagaaagaatt 12729398  T
Q  101 atttagtataattatcggcagaatttagactcaaaacaatgtaattttctgtct 154  Q
    ||||||||||||| |||||||||||| ||| || |||||||| |||||||||||    
T  12729397 atttagtataattttcggcagaattttgacacacaacaatgtgattttctgtct 12729344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 6e-48; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 145 - 334
Target Start/End: Complemental strand, 52653712 - 52653523
Alignment:
Q  145 ttttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattga 244  Q
    ||||||| ||||||||||||| | | ||||||||||||| |||| ||||||||||||| | |||| |||||||||||||||||||||||| ||||||||     
T  52653712 ttttctgcctccaaagtgtctttgtctatagagaaacttgtgtcctttggtgaagagacacaaccatttaaaagagtttgttcatgaatggttacattgc 52653613  T
Q  245 ttcagttgtcaagcattacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaa 334  Q
     ||| ||||||| || ||||||||||| ||||||||| | | ||||| ||||||||||||  |||||||||||| |||||||||||||||    
T  52653612 atcaattgtcaaacaatacaccttttcactaaaaggtatttatttaatcattgcaactttccaaatatattttggaaatttctctcacaa 52653523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 194 - 334
Target Start/End: Original strand, 50914636 - 50914776
Alignment:
Q  194 gtgaagagaaataaccctttaaaagagtttgtt-catgaatgattacattgattcagttgtcaagcattacaccttttctctaaaaggtttctttttaac 292  Q
    ||||||||||| |||| |||  ||||||||||| |||||||| || ||||| |||| |||||||||||||||||||| ||||||||||| ||| ||||||    
T  50914636 gtgaagagaaaaaacc-tttggaagagtttgtttcatgaatggttgcattgcttcaattgtcaagcattacacctttactctaaaaggtctctatttaac 50914734  T
Q  293 cattgcaacttttgaaatatattttgaaaatttctctcacaa 334  Q
    ||||||||||||| ||||||||||||||||||||||| ||||    
T  50914735 cattgcaacttttcaaatatattttgaaaatttctctaacaa 50914776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 52653879 - 52653728
Alignment:
Q  1 tgacgtgacttgcacgttcacatcaagtgtatcgacaatggtagcttacaaaataaagttctgacaaattctctcgtacacctaaagaagagaacgaata 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||| ||| ||  ||||| || ||| |||| || | ||||     
T  52653879 tgacgtgacttgcacattcacatcaagtgtatcgacaatggtagtttacagaataaagttctgtcaattttcctcgtgca-ctagagaaaagtaagaatg 52653781  T
Q  101 atttagtataattatcggcagaatttagactcaaaacaatgtaattttctgtc 153  Q
    ||||||||||||| || |||||||||| ||||| |||||||||||||||||||    
T  52653780 atttagtataattttcagcagaatttaaactcacaacaatgtaattttctgtc 52653728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 33709935 - 33709804
Alignment:
Q  1 tgacgtgacttgcacgttcacatcaagtgtatcgacaatggtagcttacaaaataaagttctgacaaattctctcgtacacctaaagaagagaacgaata 100  Q
    ||||||||||||||| |||||| |||| |||||||||||||||| ||||| |||||||||||| |||||||||| || || ||| |||| |||| ||||     
T  33709935 tgacgtgacttgcacattcacaccaagcgtatcgacaatggtagtttacagaataaagttctgtcaaattctctggtgca-ctagagaaaagaaagaatg 33709837  T
Q  101 atttagtataattatcggcagaatttagactca 133  Q
    ||||||||||||| |||||| ||||||||||||    
T  33709836 atttagtataattttcggcaaaatttagactca 33709804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 145 - 331
Target Start/End: Complemental strand, 33709752 - 33709572
Alignment:
Q  145 ttttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattga 244  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||| ||||| |||||          ||||||||     
T  33709752 ttttctgcctccaaagtgtctctatttatagagaaacttatgtcctttggtgaagggaaagaaccctttgaaagattttgt----------ttacattgc 33709663  T
Q  245 ttcagttgtcaagcattacacc--ttttctctaaaaggtttctttttaaccattgcaacttttgaaata---tattttgaaaatttctctca 331  Q
    |||| |||| ||||||||||||  |||| | |||||||| || |||||||||||||||||||  |||||   ||||||| ||||||||||||    
T  33709662 ttcaattgtaaagcattacaccttttttttataaaaggtctc-ttttaaccattgcaactttccaaatatattattttggaaatttctctca 33709572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 40574324 - 40574477
Alignment:
Q  1 tgacgtgacttgcacgttcacatcaagtgtatcga-caatggtagcttacaaaataaagttctgacaaattctctcgtacacctaaagaagagaacgaat 99  Q
    ||||||||||||||| ||||||  ||| ||||| | ||||| ||| ||||| |||||||||||| ||| ||||||||| ||| || |||| |||| ||||    
T  40574324 tgacgtgacttgcacattcacacgaagcgtatcaatcaatgatagtttacagaataaagttctgtcaatttctctcgtgcac-tagagaaaagaaagaat 40574422  T
Q  100 aatttagtataattatcggcagaatttagactcaaaacaatgtaattttctgtct 154  Q
     ||||| ||| ||| |||||||||||| |||||| || ||||| ||||| |||||    
T  40574423 gatttaatattattttcggcagaattttgactcacaagaatgtgattttgtgtct 40574477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 265
Target Start/End: Complemental strand, 16729721 - 16729628
Alignment:
Q  170 ttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattcagttgtcaagcattacac 265  Q
    ||||||||||| | ||||| ||||||||||||||| ||| ||| |||||||||| ||||||||| ||||||||| |||| | |||||| |||||||    
T  16729721 ttatagagaaagt-atgtcttttggtgaagagaaacaactctt-aaaagagtttcttcatgaattattacattgcttcaatagtcaagtattacac 16729628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 287 - 336
Target Start/End: Complemental strand, 23686071 - 23686022
Alignment:
Q  287 tttaaccattgcaacttttgaaatatattttgaaaatttctctcacaatt 336  Q
    ||||||||||||||||||  |||||||||||| |||||||||||||||||    
T  23686071 tttaaccattgcaactttccaaatatattttggaaatttctctcacaatt 23686022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 287 - 336
Target Start/End: Complemental strand, 24058308 - 24058259
Alignment:
Q  287 tttaaccattgcaacttttgaaatatattttgaaaatttctctcacaatt 336  Q
    ||||||||||||||||||  |||||||||||| |||||||||||||||||    
T  24058308 tttaaccattgcaactttccaaatatattttggaaatttctctcacaatt 24058259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 261 - 333
Target Start/End: Original strand, 2257449 - 2257521
Alignment:
Q  261 tacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctctcaca 333  Q
    |||| |||||||||||| ||| ||| ||||| ||||||||||||| |||||||||||  |||||||| |||||    
T  2257449 tacatcttttctctaaatggtctctatttaagcattgcaacttttcaaatatatttttgaaatttctatcaca 2257521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 161 - 336
Target Start/End: Original strand, 34681294 - 34681469
Alignment:
Q  161 tgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattcagttgtcaagcat 260  Q
    |||| ||||||||||||||| ||||||| ||||| ||||| ||| ||| ||||  |||||||||||||| |||| | |||||| |||| ||||||| |||    
T  34681294 tgtccctatttatagagaaatttatgtcttttggggaagaaaaacaactcttttgaagagtttgttcatcaatggtaacattgcttcaattgtcaaacat 34681393  T
Q  261 tacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaatt 336  Q
    ||||| ||||||||||||||||| | ||||||||||||||| ||  ||||||||||||||||||||||||||||||    
T  34681394 tacactttttctctaaaaggtttatgtttaaccattgcaacattccaaatatattttgaaaatttctctcacaatt 34681469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 155 - 314
Target Start/End: Original strand, 14219075 - 14219233
Alignment:
Q  155 ccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattcagttgtc 254  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||| |||||||| ||||||||  |||||||||| |||| ||||     
T  14219075 ccaaagtgtctctatttatagagaaacttatgccatttggtgaagagaaacaacactttgaaagagttggttcatgaccgattacattgcttcaattgta 14219174  T
Q  255 aagcattacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatat 314  Q
    ||||||| ||| |||||||| |||| ||||| |||||| |||||||| ||| ||||||||    
T  14219175 aagcattgcacattttctct-aaagatttctatttaactattgcaacatttcaaatatat 14219233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 14891647 - 14891583
Alignment:
Q  156 caaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagag 220  Q
    ||||||||||||| ||||||| |||| |||||||||||||| ||||| | ||| |||| ||||||    
T  14891647 caaagtgtctctacttatagaaaaacatatgtcatttggtgcagagatacaactctttgaaagag 14891583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 82
Target Start/End: Original strand, 34681118 - 34681195
Alignment:
Q  6 tgacttgcacgttcacatcaagtgtatcga-caatggtagcttacaaaataaagttctgacaaattctctcgtacacc 82  Q
    |||||||||| ||||||||||| ||||||| ||||| ||| ||||  ||||||||| || ||| ||||||||| ||||    
T  34681118 tgacttgcacattcacatcaagcgtatcgatcaatgatagtttacgtaataaagttttgtcaatttctctcgttcacc 34681195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 9e-44; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 144 - 334
Target Start/End: Original strand, 24129520 - 24129710
Alignment:
Q  144 attttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattg 243  Q
    ||||| || ||||| ||||||||||||||||||||||||||||||||||||| |||  |||||||| |||  ||||||||||||||||||| ||||||||    
T  24129520 attttttgcctccagagtgtctctatttatagagaaacttatgtcatttggttaaggaaaataaccatttggaagagtttgttcatgaatggttacattg 24129619  T
Q  244 attcagttgtcaagcattacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaa 334  Q
     |||| || ||||||| ||||||||| ||| |||| |  | | |||||||||||| |||||  ||||||||||||| ||||||||||||||    
T  24129620 cttcaattatcaagcaatacacctttcctccaaaaagcctatatttaaccattgcgactttctaaatatattttgataatttctctcacaa 24129710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 144 - 328
Target Start/End: Original strand, 48780039 - 48780222
Alignment:
Q  144 attttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattg 243  Q
    |||||||| ||||||||| ||| |||||||||| ||||| | ||| ||||||| ||||||| |||| || |||||| ||| |||||||||  ||| ||||    
T  48780039 attttctgcctccaaagtatctttatttatagataaactcaagtcttttggtgtagagaaacaacctttgaaaagaatttattcatgaatagttatattg 48780138  T
Q  244 attcagttgtcaagcattacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctc 328  Q
     |||| ||||||| ||||| |||||||||||||||| | | | ||||| ||||||||||||  ||||||||||||||||||||||    
T  48780139 cttcaattgtcaaacattataccttttctctaaaagatct-tgtttaatcattgcaactttccaaatatattttgaaaatttctc 48780222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 161 - 300
Target Start/End: Original strand, 1516526 - 1516664
Alignment:
Q  161 tgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattcagttgtcaagcat 260  Q
    ||||||||||| ||||||||||||||||||||||||||  ||||||||||||| ||||| |||||||||||||| ||| ||||  ||| || | |||||     
T  1516526 tgtctctatttctagagaaacttatgtcatttggtgaacggaaataaccctttgaaagattttgttcatgaatggttatattgcgtcatttctaaagcac 1516625  T
Q  261 tacaccttttctctaaaaggtttctttttaaccattgcaa 300  Q
    |||||||||||||||||| || || |||||||||||||||    
T  1516626 tacaccttttctctaaaatgtctc-ttttaaccattgcaa 1516664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 167 - 333
Target Start/End: Complemental strand, 20251312 - 20251147
Alignment:
Q  167 tatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattcagttgtcaagcattacacc 266  Q
    |||||||||||||||||||||| |||||| |||| ||| |||  ||||| |||||| ||||||||||  |||||||| |||| || |||| || |||||     
T  20251312 tatttatagagaaacttatgtcctttggtaaagaaaaacaactatttaagagagtt-gttcatgaatagttacattgtttcaattatcaaacaatacact 20251214  T
Q  267 ttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctctcaca 333  Q
    ||||||||||||| | ||| |||||| |||||||||||  ||||||||||| |||||||||||||||    
T  20251213 ttttctctaaaagatctctatttaacaattgcaactttccaaatatattttaaaaatttctctcaca 20251147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 153 - 304
Target Start/End: Original strand, 1494959 - 1495110
Alignment:
Q  153 ctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaag-agtttgttcatgaatgattacattgattcagtt 251  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||  |||| || ||||| |||| | |||||||||||||| ||| |||| ||||  |    
T  1494959 ctccaaaatgtctctttttatagagaaacttatgtcatttggtgaacggaaacaaacctttgaaagaattttgttcatgaatggttatattgcttcaact 1495058  T
Q  252 gtcaagcattacaccttttctctaaaaggtttctttttaaccattgcaacttt 304  Q
    || |||| |||||||||||||||||| ||| || |||||||||||||||||||    
T  1495059 gtaaagctttacaccttttctctaaatggtctc-ttttaaccattgcaacttt 1495110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 240 - 333
Target Start/End: Complemental strand, 122922 - 122829
Alignment:
Q  240 attgattcagttgtcaagcattacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctctcaca 333  Q
    |||| |||| |||||||||| ||||| |||||||||||| |||||| |||||| |||||||||||| ||||||| |||| ||||||||||||||    
T  122922 attgtttcaattgtcaagcaatacacattttctctaaaatgtttctatttaactattgcaacttttcaaatatactttggaaatttctctcaca 122829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 1533060 - 1533134
Alignment:
Q  169 tttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattg 243  Q
    ||||||||||||||||||||||||| ||||| |||| |||||||| ||||| ||||||||| |||| ||| ||||    
T  1533060 tttatagagaaacttatgtcatttgatgaagggaaacaaccctttgaaagattttgttcataaatggttatattg 1533134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 231
Target Start/End: Complemental strand, 46324444 - 46324378
Alignment:
Q  165 tctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatga 231  Q
    ||||| |||||| ||||||||||| | | ||||||||||| ||| ||||| ||||||||||||||||    
T  46324444 tctatatatagaaaaacttatgtcctcttgtgaagagaaacaactctttagaagagtttgttcatga 46324378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 20251500 - 20251439
Alignment:
Q  17 ttcacatcaagtgtatcga-caatggtagcttacaaaataaagttctgacaaattctctcgt 77  Q
    ||||||||||||||||||| ||||| ||| ||||| |||||||||||| ||| |||||||||    
T  20251500 ttcacatcaagtgtatcgatcaatgatagtttacataataaagttctgtcaatttctctcgt 20251439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 257 - 304
Target Start/End: Original strand, 1533134 - 1533180
Alignment:
Q  257 gcattacaccttttctctaaaaggtttctttttaaccattgcaacttt 304  Q
    |||||||||||||||||||| |||| || |||||||||||||||||||    
T  1533134 gcattacaccttttctctaataggtctc-ttttaaccattgcaacttt 1533180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 8e-35; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 153 - 328
Target Start/End: Original strand, 12239809 - 12239983
Alignment:
Q  153 ctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattcagttg 252  Q
    ||||||||||||| ||||||||||||||||||| || |||| | |||||    |||| ||| |||||||||||||||||||| ||||||||  ||| |||    
T  12239809 ctccaaagtgtctttatttatagagaaacttatatcctttgatcaagagccgcaaccatttgaaagagtttgttcatgaatggttacattgcatcaattg 12239908  T
Q  253 tcaagcattacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctc 328  Q
    ||||||| ||||| ||||| ||||||||| | | ||||||||||||||| ||| |||||||||||| |||||||||    
T  12239909 tcaagcaatacactttttcactaaaaggtctttctttaaccattgcaac-tttcaaatatattttggaaatttctc 12239983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 146 - 340
Target Start/End: Complemental strand, 1840589 - 1840394
Alignment:
Q  146 tttctgtctccaaagtgtctctatttatagagaaacttatgt-catttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattga 244  Q
    |||||| ||||||| ||||||||||||||||||||||||||| | |||| |||||| | | |||  |||| |||| |||||||||||||| ||||| |      
T  1840589 tttctgcctccaaaatgtctctatttatagagaaacttatgtccttttgatgaagaaagacaactttttagaagaatttgttcatgaatggttacaatac 1840490  T
Q  245 ttcagttgtcaagcattacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaa--tatattttgaaaatttctctcacaattaata 340  Q
    || | || ||||| |||||||| |||  ||||||||| || | |||||||||||||||||| |||  |||||||| |||||| |||||||||||||||    
T  1840489 ttgaattatcaagaattacaccattt-actaaaaggtctc-tcttaaccattgcaacttttcaaatttatattttaaaaattactctcacaattaata 1840394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 153 - 315
Target Start/End: Complemental strand, 24870367 - 24870206
Alignment:
Q  153 ctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattcagttg 252  Q
    |||||||||||||||||||||||||||| ||||||| |   |||||||||||||||  |||| ||||||||||| || || | ||| | || |||| |      
T  24870367 ctccaaagtgtctctatttatagagaaaattatgtcttacagtgaagagaaataactatttagaagagtttgttaataaacggttagactgcttcattga 24870268  T
Q  253 tcaagcattacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatatt 315  Q
    ||| |||||||||| |||| ||||||||| |  ||||||| |||||||||||| |||| ||||    
T  24870267 tcacgcattacaccctttcactaaaaggtct-attttaactattgcaacttttcaaatttatt 24870206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 12239634 - 12239782
Alignment:
Q  1 tgacgtgacttgcacgttcacatcaagtgtatcgacaatggtagcttacaaaataaagttctgacaaattctctcgtacacctaaagaagagaacgaata 100  Q
    ||||||||||||||| |||||| |||| |||||||||||||||| || || ||||||||| || ||| || ||| ||| | ||| |||  |||| |||||    
T  12239634 tgacgtgacttgcacattcacaccaagcgtatcgacaatggtagtttccagaataaagttttgtcaatttatctagtata-ctagagataagaaagaata 12239732  T
Q  101 atttagtataattatcggcagaatttagactcaaaacaatgtaattttct 150  Q
    ||||| ||| ||| |||||||||||   || || |||||||| |||||||    
T  12239733 atttaatattattttcggcagaattctaacacacaacaatgtgattttct 12239782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 153 - 228
Target Start/End: Original strand, 1829807 - 1829883
Alignment:
Q  153 ctccaaagtgtctctatttatagagaaacttatgtcattt-ggtgaagagaaataaccctttaaaagagtttgttca 228  Q
    ||||||| ||||||||||||||||||||||| |||| ||| | | |||| ||| ||| ||||||||||||| |||||    
T  1829807 ctccaaaatgtctctatttatagagaaacttgtgtcctttcgataaagataaacaactctttaaaagagttcgttca 1829883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 24533284 - 24533212
Alignment:
Q  206 aaccctttaaaagagtttgttcatgaatgattacattgattcagttgtcaagcattacaccttttctctaaaa 278  Q
    |||||||| |||| ||||||||||||||| |||||||| | || |||| || |||||||  ||||||||||||    
T  24533284 aaccctttgaaagtgtttgttcatgaatggttacattgctacaattgttaaacattacatattttctctaaaa 24533212  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 305
Target Start/End: Original strand, 34091651 - 34091806
Alignment:
Q  145 ttttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattga 244  Q
    |||||||||||  |||||||| |||||||| ||||| |||||   |||| |||| ||||| ||| ||||||     ||| |||||||||||||||| |      
T  34091651 ttttctgtctctcaagtgtctttatttataaagaaatttatgatctttgatgaacagaaacaactctttaat----ttttttcatgaatgattacactac 34091746  T
Q  245 ttcagttgtcaagcattacaccttttctctaaaaggtttctttttaaccattgcaactttt 305  Q
    |||| || |||| |||||||| |||| | |||||||| | | ||||||||||| |||||||    
T  34091747 ttcaattatcaaacattacacatttt-tttaaaaggtctttatttaaccattgtaactttt 34091806  T

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Target: chr6 (Bit Score: 76; Significance: 8e-35; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 145 - 331
Target Start/End: Original strand, 28612324 - 28612508
Alignment:
Q  145 ttttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattga 244  Q
    ||||||| ||| ||||||||| | |||||| ||||||||||||||||||||||||| ||| || | |||  ||||||||||||||||||  ||| ||||     
T  28612324 ttttctgcctcgaaagtgtctatctttataaagaaacttatgtcatttggtgaagaaaaacaatcatttggaagagtttgttcatgaattgttatattgc 28612423  T
Q  245 ttcagttgtcaagcattacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctctca 331  Q
    |||| ||||||| || ||||||||| ||||||||||  ||| |||||||||| |||  ||| |||||||||||| ||||||||||||    
T  28612424 ttcaattgtcaaacaatacacctttgctctaaaaggcctctatttaaccattacaa--ttttaaatatattttggaaatttctctca 28612508  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 11932044 - 11931984
Alignment:
Q  17 ttcacatcaagtgtatcgacaatggtagcttacaaaataaagttctgacaaattctctcgt 77  Q
    |||||| ||||| ||||||||||||||| ||| | |||||| ||||| |||||||||||||    
T  11932044 ttcacaccaagtttatcgacaatggtagtttatagaataaaattctgtcaaattctctcgt 11931984  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 28612156 - 28612303
Alignment:
Q  1 tgacgtgacttgcacgttcacatcaagtgtatcga-caatggtagcttacaaaataaagttctgacaaattctctcgtacacctaaagaagagaacgaat 99  Q
    |||||||||||| || |||||| ||||  |||||  |||||||||  ||||||| || |||||| ||| | | ||||| ||| || |||  |||| ||||    
T  28612156 tgacgtgacttgtacattcacaccaagcatatcgttcaatggtagtatacaaaacaatgttctgtcaattcccctcgtgcac-tagagataagaaagaat 28612254  T
Q  100 aatttagtataattatcggcagaatttagactcaaaacaatgtaatttt 148  Q
     ||||||||||||| |||||||||||| |||||| || ||||| |||||    
T  28612255 gatttagtataattttcggcagaatttcgactcacaagaatgtgatttt 28612303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 63; Significance: 5e-27; HSPs: 3)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 144 - 335
Target Start/End: Complemental strand, 217689 - 217508
Alignment:
Q  144 attttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattg 243  Q
    |||||||| ||| |||||||||  |||||||||||||||||||||||||||| |||| ||| |||| ||| ||||||||||| |||||   ||| | |||    
T  217689 attttctgcctctaaagtgtct--atttatagagaaacttatgtcatttggtaaagataaacaaccttttgaaagagtttgtccatga---attgctttg 217595  T
Q  244 attcagttgtcaagcattacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaat 335  Q
    |     |||||||| ||||| | ||||||||||||| | ||| |||||||||||||||||||  | ||||||| | ||||||||||||||||    
T  217594 a-----ttgtcaagaattacgcattttctctaaaagatctctatttaaccattgcaacttttttattatatttcggaaatttctctcacaat 217508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 156 - 328
Target Start/End: Complemental strand, 215816 - 215646
Alignment:
Q  156 caaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattcagttgtca 255  Q
    |||||||||||| | |||||| ||||||||||| |||||||||||||||| |||||||||| |  |||||| ||||||| |||||    |||| | ||||    
T  215816 caaagtgtctctgtctatagaaaaacttatgtcctttggtgaagagaaatgaccctttaaatggatttgtttatgaatggttaca--acttcaatcgtca 215719  T
Q  256 agcattacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctc 328  Q
    | |||||||  ||||||  ||||| | ||| ||||||||||||||||||  |||||||||||| |||||||||    
T  215718 aacattacatattttcttcaaaagatctctatttaaccattgcaactttctaaatatattttggaaatttctc 215646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 7 - 148
Target Start/End: Complemental strand, 217849 - 217708
Alignment:
Q  7 gacttgcacgttcacatcaagtgtatcga-caatggtagcttacaaaataaagttctgacaaattctctcgtacacctaaagaagagaacgaataattta 105  Q
    ||||||||| |||||| |||||||||||| ||||||||| ||||||||||| |||||| ||| |||||||||  | ||| |||| |||| |||| |||||    
T  217849 gacttgcacattcacaccaagtgtatcgatcaatggtagtttacaaaataatgttctgccaatttctctcgt-gaactagagaaaagaaagaattattta 217751  T
Q  106 gtataattatcggcagaatttagactcaaaacaatgtaatttt 148  Q
    | || ||| |||||||||||  ||| || |||||||| |||||    
T  217750 gaattattttcggcagaattctgacacacaacaatgtgatttt 217708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 3e-25; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 49053899 - 49053745
Alignment:
Q  1 tgacgtgacttgcacgttcacatcaagtgtatcgacaatggtagcttacaaaataaagttctgacaaattctctcgtacacctaaagaagagaacgaata 100  Q
    ||||||||||||||| |||||| ||||  ||||||||||||||| |||||||||||||||||| ||| ||| ||||| || ||| ||||||||| ||||     
T  49053899 tgacgtgacttgcacattcacaccaagcatatcgacaatggtagtttacaaaataaagttctgccaatttccctcgtgca-ctagagaagagaaagaatg 49053801  T
Q  101 atttagtataa-ttatcggcagaatttagactcaaaacaatgtaattttctgtctc 155  Q
    ||||||||||| || | |||||||||  ||| || |||||||| ||||| ||||||    
T  49053800 atttagtataattttttggcagaattatgacacacaacaatgtgattttatgtctc 49053745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 161 - 334
Target Start/End: Complemental strand, 49053713 - 49053554
Alignment:
Q  161 tgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattcagttgtcaagcat 260  Q
    ||||| |||||||| | ||||||||||| ||||||||||||| | || | ||| |||||||||||| ||||||| ||||||||              ||     
T  49053713 tgtctatatttatataaaaacttatgtcctttggtgaagagacacaatcatttgaaagagtttgtttatgaatggttacattg--------------caa 49053628  T
Q  261 tacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaa 334  Q
    ||||||||||| ||||||||| | | ||||||||||||||||||  |||||||||||| |||||||||||||||    
T  49053627 tacaccttttcactaaaaggtctttatttaaccattgcaactttccaaatatattttggaaatttctctcacaa 49053554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 335
Target Start/End: Complemental strand, 49061293 - 49061133
Alignment:
Q  161 tgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattcagttgtcaagcat 260  Q
    |||||||||||||| ||||||||||||| ||| ||||||||| | ||   ||| ||||| |||||| ||||||| ||||||||              ||     
T  49061293 tgtctctatttatatagaaacttatgtcctttcgtgaagagacacaattatttgaaagaatttgtttatgaatggttacattg--------------caa 49061208  T
Q  261 tacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaat 335  Q
    ||||||| ||| ||||||||| | | ||||||||||||||||||  |||||||||||| ||||||||||||||||    
T  49061207 tacacctattcactaaaaggtctttatttaaccattgcaactttccaaatatattttggaaatttctctcacaat 49061133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 49061479 - 49061325
Alignment:
Q  1 tgacgtgacttgcacgttcacatcaagtgtatcgacaatggtagcttacaaaataaagttctgacaaattctctcgtacacctaaagaagagaacgaata 100  Q
    |||||||| |||||| |||||| |||   ||||||||||||||| ||||| ||||||||| || ||| ||| ||||| || ||| |||| |||| ||||     
T  49061479 tgacgtgatttgcacattcacaccaaacatatcgacaatggtagtttacagaataaagttttgtcaatttccctcgtgca-ctagagaaaagaaagaatg 49061381  T
Q  101 atttagtataa-ttatcggcagaatttagactcaaaacaatgtaattttctgtctc 155  Q
    ||||||||||| || |||||||||||  ||| || |||||||| ||||| ||||||    
T  49061380 atttagtataatttttcggcagaattatgacacacaacaatgtgattttatgtctc 49061325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 272
Target Start/End: Complemental strand, 17458345 - 17458230
Alignment:
Q  157 aaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattcagttgtcaa 256  Q
    ||||| |||| ||||||||| ||||||||||| ||||||||||||||| |||   || ||||| ||||||| |||||| ||||||||  | | |||||||    
T  17458345 aaagtatctcaatttatagataaacttatgtcctttggtgaagagaaacaactacttgaaagaatttgttcttgaatggttacattgcatgaattgtcaa 17458246  T
Q  257 gcattacaccttttct 272  Q
     ||||||  |||||||    
T  17458245 acattacttcttttct 17458230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 318
Target Start/End: Complemental strand, 50059430 - 50059269
Alignment:
Q  156 caaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattcagttgtca 255  Q
    |||||||||| |||||||||| || |||||||| ||| ||||| ||||| | |  |||||||||| ||||| | ||||| |||||||| ||   |  |||    
T  50059430 caaagtgtctttatttatagaaaatcttatgtcttttagtgaacagaaaca-ctttttaaaagagcttgtttacgaatggttacattgctttgatgttca 50059332  T
Q  256 agcattacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttg 318  Q
    |||||||||||| ||| ||| || || ||| |||||| | ||||| |||| ||||||||||||    
T  50059331 agcattacacctcttcactataatgtctctatttaacgactgcaattttttaaatatattttg 50059269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 10917470 - 10917398
Alignment:
Q  145 ttttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaaga 219  Q
    ||||||| |||||||||||||  ||||||||||||||||||||| ||| ||||||||| | ||| |||| |||||    
T  10917470 ttttctgcctccaaagtgtct--atttatagagaaacttatgtcctttagtgaagagatacaactctttgaaaga 10917398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 192
Target Start/End: Original strand, 52282180 - 52282226
Alignment:
Q  145 ttttctgtctccaaagtgtctctatttatagagaaacttatgtcattt 192  Q
    ||||||||||| |||||||||||||||||||| ||| |||||||||||    
T  52282180 ttttctgtctc-aaagtgtctctatttatagataaatttatgtcattt 52282226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 577 - 609
Target Start/End: Complemental strand, 61379 - 61347
Alignment:
Q  577 ttgtttggttatataattccattttatcttctt 609  Q
    |||||||||||||||||||||||||| ||||||    
T  61379 ttgtttggttatataattccattttagcttctt 61347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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