View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17543_high_9 (Length: 518)

Name: NF17543_high_9
Description: NF17543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17543_high_9
NF17543_high_9
[»] chr2 (4 HSPs)
chr2 (113-467)||(15866146-15866504)
chr2 (465-505)||(15866067-15866107)
chr2 (78-116)||(15866627-15866665)
chr2 (295-341)||(21983238-21983284)
[»] chr4 (1 HSPs)
chr4 (113-343)||(53077738-53077968)
[»] chr1 (2 HSPs)
chr1 (115-347)||(1459357-1459589)
chr1 (114-353)||(1499153-1499392)
[»] chr3 (1 HSPs)
chr3 (139-326)||(50273364-50273551)
[»] chr8 (3 HSPs)
chr8 (123-326)||(26787248-26787451)
chr8 (270-338)||(975620-975688)
chr8 (138-205)||(974943-975010)
[»] chr7 (1 HSPs)
chr7 (272-338)||(48657415-48657481)
[»] chr6 (1 HSPs)
chr6 (286-347)||(3151592-3151653)


Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 113 - 467
Target Start/End: Complemental strand, 15866504 - 15866146
Alignment:
Q  113 ttaccttagtcttaggagcaagacctgccataagagcagcagcagcgttaccggcattattttcttcaatgaaactgatagtagagttgataaccaacaa 212  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15866504 ttacctttgtcttaggagcaagacctgccataagagcagcagcagcgttaccggcattattttcttcaatgaaactgatagtagagttgataaccaacaa 15866405  T
Q  213 gcaaataattcccacaaaatcttgccaatctggaggctgtccttctccgttcgcaagagcaattgccattaaagctgcagcttccatcacccatgataat 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15866404 gcaaataattcccacaaaatcttgccaatctggaggctgtccttctccgttcgcaagagcaattgccattaaagctgcagcttccatcacccatgataat 15866305  T
Q  313 ggattccacataaacccaagaaacttgagaaacttactctcctacatcattaaaattataataccgttacaaccataatctatgtataccgacacagaca 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  15866304 ggattccacataaacccaagaaacttgagaaacttactctcctacatcattaaaattataacaccgttacaaccataatctatgtataccgacacagaca 15866205  T
Q  413 tctgacacgacaaaaac----acatgtcacaatagacacgacatgatgatcacagtacc 467  Q
    |||||||||||||||||    ||||||||||||||||||||||||||||||||||||||    
T  15866204 tctgacacgacaaaaacactgacatgtcacaatagacacgacatgatgatcacagtacc 15866146  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 465 - 505
Target Start/End: Complemental strand, 15866107 - 15866067
Alignment:
Q  465 accttcttctcttctagcttgtttggaccaaatatttgaat 505  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  15866107 accttcttctcttctagcttgtttggaccaaatatttgaat 15866067  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 78 - 116
Target Start/End: Complemental strand, 15866665 - 15866627
Alignment:
Q  78 aacattttagtgttctactaattaaagtgatcattttac 116  Q
    |||||||||||||||||||||||||||||||||||||||    
T  15866665 aacattttagtgttctactaattaaagtgatcattttac 15866627  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 295 - 341
Target Start/End: Original strand, 21983238 - 21983284
Alignment:
Q  295 tccatcacccatgataatggattccacataaacccaagaaacttgag 341  Q
    ||||| |||||||||||||||||||||||||| || | |||||||||    
T  21983238 tccatgacccatgataatggattccacataaaacccaaaaacttgag 21983284  T

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Target: chr4 (Bit Score: 135; Significance: 4e-70; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 113 - 343
Target Start/End: Original strand, 53077738 - 53077968
Alignment:
Q  113 ttaccttagtcttaggagcaagacctgccataagagcagcagcagcgttaccggcattattttcttcaatgaaactgatagtagagttgataaccaacaa 212  Q
    ||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||    
T  53077738 ttacctttgtcttgggagcaagaccagccataagagctgcagcagcgttaccggcattattttcttcaatgaaactgatggtggagttgatcaccaacaa 53077837  T
Q  213 gcaaataattcccacaaaatcttgccaatctggaggctgtccttctccgttcgcaagagcaattgccattaaagctgcagcttccatcacccatgataat 312  Q
    ||||||||| || ||||||||||||||||| || |||| ||| |  || || |||||| |||||||||| ||||| ||||||||||| |||||||| ||     
T  53077838 gcaaataatacctacaaaatcttgccaatccgggggctttccattaccatttgcaagaccaattgccatcaaagccgcagcttccatgacccatgacaaa 53077937  T
Q  313 ggattccacataaacccaagaaacttgagaa 343  Q
    ||||||||||| |||||||||||||||||||    
T  53077938 ggattccacatgaacccaagaaacttgagaa 53077968  T

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Target: chr1 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 115 - 347
Target Start/End: Complemental strand, 1459589 - 1459357
Alignment:
Q  115 accttagtcttaggagcaagacctgccataagagcagcagcagcgttaccggcattattttcttcaatgaaactgatagtagagttgataaccaaca-ag 213  Q
    ||||||| ||| ||||| | ||| ||||| |||||||| |||||||| |||||||| |||||||||||||||||||| || |||||||| ||||| | ||    
T  1459589 accttagccttgggagctaaaccagccatgagagcagcggcagcgttgccggcattgttttcttcaatgaaactgatggtggagttgatgaccaagagag 1459490  T
Q  214 caaataattcccacaaaatcttgccaatctggaggctgtccttctccgttcgcaagagcaattgccattaaagctgcagcttccatcacccatgataatg 313  Q
    | ||| ||||| ||||| ||||||||||| ||||||  ||| || || || || | |||||| ||||| | ||| ||||||||||| |||||||| || |    
T  1459489 c-aatgattccgacaaagtcttgccaatcaggaggccttccatcaccattagccaaagcaatggccataatagcagcagcttccataacccatgacaaag 1459391  T
Q  314 gattccacataaacccaagaaacttgagaaactt 347  Q
    | ||||||||||| || | |||||| | ||||||    
T  1459390 ggttccacataaaacctaaaaacttcaaaaactt 1459357  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 114 - 353
Target Start/End: Original strand, 1499153 - 1499392
Alignment:
Q  114 taccttagtcttaggagcaagacctgccataagagcagcagcagcgttaccggcattattttcttcaatgaaactgatagtagagttgataaccaacaag 213  Q
    |||||| || || ||||| | ||| ||||| |||||||| || || || |||||||| |||||||||||||||||||| || || ||||| || |||||     
T  1499153 taccttggttttgggagctaaaccagccatgagagcagcggcggcattgccggcattgttttcttcaatgaaactgattgtggaattgatgactaacaaa 1499252  T
Q  214 caaataattcccacaaaatcttgccaatctggaggctgtccttctccgttcgcaagagcaattgccattaaagctgcagcttccatcacccatgataatg 313  Q
      ||| ||||| ||||| ||||||||||| || |||  |||   ||| || || | |||||| ||||| | ||| ||||||||||| ||||||||||| |    
T  1499253 gcaatgattccgacaaagtcttgccaatcagggggccttccacttccattagccaaagcaatggccatgatagcagcagcttccataacccatgataaag 1499352  T
Q  314 gattccacataaacccaagaaacttgagaaacttactctc 353  Q
    ||||||||||||| || | |||||| | |||||| |||||    
T  1499353 gattccacataaaacccaaaaacttcaaaaacttgctctc 1499392  T

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Target: chr3 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 139 - 326
Target Start/End: Complemental strand, 50273551 - 50273364
Alignment:
Q  139 gccataagagcagcagcagcgttaccggcattattttcttcaatgaaactgatagtagagttgataaccaacaagcaaataattcccacaaaatcttgcc 238  Q
    ||||| |||||||||||||| ||||| |||||||| |||||||||||||||||||| ||||| |||||||| |   |||| || || |||||||| ||||    
T  50273551 gccatgagagcagcagcagcattaccagcattattctcttcaatgaaactgatagttgagttaataaccaaaagagaaatgataccaacaaaatcctgcc 50273452  T
Q  239 aatctggaggctgtccttctccgttcgcaagagcaattgccattaaagctgcagcttccatcacccatgataatggattccacataaa 326  Q
    |||| |||||   |||    || || || | |||||| ||||| | ||| ||||||||||| ||||||||||||||||||||||||||    
T  50273451 aatcaggaggtcttccactgccattagccaaagcaatggccataatagcagcagcttccataacccatgataatggattccacataaa 50273364  T

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Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 123 - 326
Target Start/End: Complemental strand, 26787451 - 26787248
Alignment:
Q  123 cttaggagcaagacctgccataagagcagcagcagcgttaccggcattattttcttcaatgaaactgatagtagagttgataaccaaca-agcaaataat 221  Q
    ||||||||| | ||| ||||| ||||| || |||||||| |||||||| |||||||||||||||||||| || |  ||||| | ||| | ||| ||| ||    
T  26787451 cttaggagctaaaccagccatgagagcggcggcagcgttgccggcattgttttcttcaatgaaactgatggtggcattgatgatcaaaagagc-aatgat 26787353  T
Q  222 tcccacaaaatcttgccaatctggaggctgtccttctccgttcgcaagagcaattgccattaaagctgcagcttccatcacccatgataatggattccac 321  Q
    ||| ||||| ||||||||||| || |||  ||| || || || || | |||||| ||||| | ||| ||||||||||| ||||||||||| || ||||||    
T  26787352 tccaacaaagtcttgccaatcagggggccttccatcaccattagccaaagcaatggccataatagcagcagcttccataacccatgataaagggttccac 26787253  T
Q  322 ataaa 326  Q
    |||||    
T  26787252 ataaa 26787248  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 338
Target Start/End: Original strand, 975620 - 975688
Alignment:
Q  270 agcaattgccattaaagctgcagcttccatcacccatgataatggattccacataaacccaagaaactt 338  Q
    |||||| ||||| | ||| ||||||||||| |||||||| || ||||||||||||||||| | ||||||    
T  975620 agcaatggccatgatagcagcagcttccataacccatgacaaaggattccacataaaccctaaaaactt 975688  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 205
Target Start/End: Original strand, 974943 - 975010
Alignment:
Q  138 tgccataagagcagcagcagcgttaccggcattattttcttcaatgaaactgatagtagagttgataa 205  Q
    ||||||||| ||||| || || ||||| |||||||||||||| |||||||| || |||||||| ||||    
T  974943 tgccataagggcagctgctgcattaccagcattattttcttctatgaaacttatggtagagtttataa 975010  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 338
Target Start/End: Complemental strand, 48657481 - 48657415
Alignment:
Q  272 caattgccattaaagctgcagcttccatcacccatgataatggattccacataaacccaagaaactt 338  Q
    |||||||||| || ||||| |||||||| |||||||| |  |||||||||||||| | |||||||||    
T  48657481 caattgccatcaacgctgctgcttccataacccatgaaagaggattccacataaagctaagaaactt 48657415  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 347
Target Start/End: Complemental strand, 3151653 - 3151592
Alignment:
Q  286 gctgcagcttccatcacccatgataatggattccacataaacccaagaaacttgagaaactt 347  Q
    ||||||||||||||||||||||| |  |||||||||||||| || | |||||| | ||||||    
T  3151653 gctgcagcttccatcacccatgaaagaggattccacataaatcccaaaaacttcaaaaactt 3151592  T

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