View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17543_low_1 (Length: 885)

Name: NF17543_low_1
Description: NF17543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17543_low_1
NF17543_low_1
[»] chr6 (6 HSPs)
chr6 (301-836)||(25526973-25527534)
chr6 (301-389)||(25490079-25490167)
chr6 (409-480)||(25489964-25490035)
chr6 (17-83)||(25490405-25490471)
chr6 (35-73)||(26052542-26052580)
chr6 (35-73)||(26072595-26072633)
[»] chr5 (2 HSPs)
chr5 (640-759)||(18521072-18521189)
chr5 (630-722)||(11074728-11074820)
[»] chr8 (2 HSPs)
chr8 (639-833)||(33155604-33155807)
chr8 (455-488)||(11097159-11097192)
[»] chr7 (1 HSPs)
chr7 (572-605)||(25940654-25940687)


Alignment Details
Target: chr6 (Bit Score: 152; Significance: 5e-80; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 301 - 836
Target Start/End: Original strand, 25526973 - 25527534
Alignment:
Q  301 ttggaatgtccatcaactcgataagattactcgatcattttgaaccattaagtcattaattgaacaaccggataaaactggataactctatcatataact 400  Q
    |||||||||||||||||||||||||||| |  ||||||||||||| ||| ||||||||||||||||||| ||||||| ||||| | ||||||||||||||    
T  25526973 ttggaatgtccatcaactcgataagattgccggatcattttgaactattgagtcattaattgaacaaccagataaaattggattagtctatcatataact 25527072  T
Q  401 cggtctatttagaaaaataagtaggatagac-atataaaaaggtgtttaatatgcgagtaatgat-------atttg----tacaactatttagtgacaa 488  Q
    || |||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||       | |||    |  |||||||| |||||||    
T  25527073 cgatctatttagaaaaataatgaggatagacaatataaaaaggtgtttaatatgcgagtaatgattaattaaaattgaaaatcaaactattttgtgacaa 25527172  T
Q  489 nnnnnnngacaaccttcttttttctcgttttattggtcatcaacaacaaagagag----atagagag--------taagaacacagtaaaagtatgagag 576  Q
              ||| || ||||||||| ||||||||||||| ||||| ||||||||    ||||||||        |||||||||| ||||||||||||||    
T  25527173 atttttt---aacatttttttttctctttttattggtcataaacaataaagagagaaaaatagagagagagggtgtaagaacacaataaaagtatgagag 25527269  T
Q  577 ttgtctaaaaattgttccaaaatggttgttccaaaaacactacatatatcatttcttgttcaattttgattatcctacttcaaggtttaatccgttaatg 676  Q
    |||||||| |||||||| |||||||||||||| |||||| || |  |||  |||||| ||||||||||||||||||| ||  ||||| |||| ||||| |    
T  25527270 ttgtctaataattgttctaaaatggttgttccgaaaacaatagaagtattgtttcttattcaattttgattatcctatttggaggttaaatctgttaacg 25527369  T
Q  677 tgtttacatgctgttatgtaatattggttatggttgtttttcgtttcattgactacttgatgttagcttggactgttgttgtgca------aattttaag 770  Q
    |||| ||| | ||||||||||| |||||| ||||||||||| ||||||  |||||||| ||| ||| || || |||||||||| |      |||||||||    
T  25527370 tgttcacaggttgttatgtaattttggttttggttgttttttgtttca-cgactacttaatg-tagtttagattgttgttgtgtaactctgaattttaag 25527467  T
Q  771 ttttctcttgcaaattttatgctagaggggcttatgttgg-attttaatacatatttttcttagcct 836  Q
    ||| |||||||| || |||||||||||||| || || |||  ||||||||||| ||| |||||||||    
T  25527468 tttcctcttgcacatcttatgctagaggggtttctgctggttttttaatacatgtttatcttagcct 25527534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 301 - 389
Target Start/End: Complemental strand, 25490167 - 25490079
Alignment:
Q  301 ttggaatgtccatcaactcgataagattactcgatcattttgaaccattaagtcattaattgaacaaccggataaaactggataactct 389  Q
    |||||||||||||||||||||||||||||||  |||||||||||| ||| ||||||||||||||||||| ||||||| ||||| |||||    
T  25490167 ttggaatgtccatcaactcgataagattacttcatcattttgaactattgagtcattaattgaacaaccagataaaattggattactct 25490079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 409 - 480
Target Start/End: Complemental strand, 25490035 - 25489964
Alignment:
Q  409 ttagaaaaataagtaggatagacatataaaaaggtgtttaatatgcgagtaatgatatttgtacaactattt 480  Q
    ||||||||||||  ||||||  |||||||||||||||||| | | ||||||||||||||||||||| |||||    
T  25490035 ttagaaaaataatgaggataagcatataaaaaggtgtttattttacgagtaatgatatttgtacaattattt 25489964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 25490471 - 25490405
Alignment:
Q  17 ataagtagtaagctagcgtttataaactttaatgtgtaccacacatgttatattgtttgagaattag 83  Q
    |||||||||||| ||| ||||||||| |||||||||||  | |||||||| |||||| |||||||||    
T  25490471 ataagtagtaaggtagtgtttataaattttaatgtgtagtatacatgttacattgttggagaattag 25490405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 73
Target Start/End: Original strand, 26052542 - 26052580
Alignment:
Q  35 tttataaactttaatgtgtaccacacatgttatattgtt 73  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  26052542 tttataaactttaatgtgtaccatacatgttacattgtt 26052580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 73
Target Start/End: Original strand, 26072595 - 26072633
Alignment:
Q  35 tttataaactttaatgtgtaccacacatgttatattgtt 73  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  26072595 tttataaactttaatgtgtaccatacatgttacattgtt 26072633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 640 - 759
Target Start/End: Complemental strand, 18521189 - 18521072
Alignment:
Q  640 ttttgattatcctacttcaaggtttaatccgttaatgtgtttacatgctgttatgtaatattggttatggttgtttttcgtttcattgactacttgatgt 739  Q
    ||||||||||||||||| || ||| |||||||||||||||||||| | |||| |||||| ||  || |||||||| || |||| | |||||||||||||     
T  18521189 ttttgattatcctacttgaaagttaaatccgttaatgtgtttacaggttgttctgtaattttacttgtggttgttctttgtttta-tgactacttgatg- 18521092  T
Q  740 tagcttggactgttgttgtg 759  Q
    ||||||||||||||||||||    
T  18521091 tagcttggactgttgttgtg 18521072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 630 - 722
Target Start/End: Complemental strand, 11074820 - 11074728
Alignment:
Q  630 tcttgttcaattttgattatcctacttcaaggtttaatccgttaatgtgtttacatgctgttatgtaatattggttatggttgtttttcgttt 722  Q
    |||| ||| |||||| |||||||||||  ||||| |||||||||||||||||| | | |||| |||||| |||||| ||||| ||||||||||    
T  11074820 tcttattcgattttggttatcctacttagaggttaaatccgttaatgtgtttagaggttgttttgtaattttggttttggttatttttcgttt 11074728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 639 - 833
Target Start/End: Complemental strand, 33155807 - 33155604
Alignment:
Q  639 attttgattatcctacttcaaggtttaatccgttaatgtgtttacatgctgttatgtaatat---tggttatggttgtttttcgtttcattgactacttg 735  Q
    ||||||||||||||||||  | ||| |||| ||||||||| ||||||||| || |||||| |   | ||| |||||||||||| ||| |  |||||||||    
T  33155807 attttgattatcctacttggatgttaaatctgttaatgtgcttacatgctattttgtaatttttgttgttttggttgtttttcatttta-cgactacttg 33155709  T
Q  736 atgttagcttggactgttgttgtgca------aattttaagttttctcttgcaaattttatgctagaggggcttatgttggatttt--aatacatatttt 827  Q
    ||| |||||||||||||||| ||| |      || ||||||||| |||||| | || || |||||||||||||| |||||| ||||  |||| |||||||    
T  33155708 atg-tagcttggactgttgtcgtgtaactctgaaatttaagtttcctcttgtacatcttgtgctagaggggcttttgttggttttttgaatatatatttt 33155610  T
Q  828 tcttag 833  Q
    ||||||    
T  33155609 tcttag 33155604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 455 - 488
Target Start/End: Complemental strand, 11097192 - 11097159
Alignment:
Q  455 gagtaatgatatttgtacaactatttagtgacaa 488  Q
    ||||||||||||||||||||| ||||||||||||    
T  11097192 gagtaatgatatttgtacaaccatttagtgacaa 11097159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 572 - 605
Target Start/End: Original strand, 25940654 - 25940687
Alignment:
Q  572 gagagttgtctaaaaattgttccaaaatggttgt 605  Q
    ||||||||||||||||||||| ||||||||||||    
T  25940654 gagagttgtctaaaaattgttacaaaatggttgt 25940687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University