View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17543_low_11 (Length: 469)
Name: NF17543_low_11
Description: NF17543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17543_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 22 - 453
Target Start/End: Complemental strand, 38088265 - 38087834
Alignment:
| Q |
22 |
aaaagaaagaaaaactaaaattctcttaacgtacttgcatgagtagaaagaaatatcaaagttaacaaagaacaagtttattgacttgaatttaattaat |
121 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38088265 |
aaaagaaagaaaaactaaaattctcttcacgtatttgcatgagtagaaagaaatatcaaagttaacaaagaacaagtttattgacttgaatttaattaat |
38088166 |
T |
|
| Q |
122 |
ttaagtagctgataattgtcacattgtatatcttaagctgctcaattatgtattcacaaagtaccttaaaaatttggtttctttatctaagaggtgtaag |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38088165 |
ttaagtagctgataattgtcacattgtatatcttaagctgctcaattatgtattcacaaagtagcttaaaaatttggtttctttatctaagaggtgtaag |
38088066 |
T |
|
| Q |
222 |
ggatgtgagcgtgtctcaatttttagacatagaatgtctcattgcaatattaacaaaagatcatttctatctctaacaatgaaccaaagaaaattaattc |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38088065 |
ggatgtgagcgtgtctcaatttttagacatagaatgtatcattgcaatattaacaaaagatcatttctatctctaacaatgaaccaaagaaaattaattc |
38087966 |
T |
|
| Q |
322 |
aaaaccatatctaacagcatagacaaattgaatccgtctccaatggaaaagttttggtctctaatctcttgtctcttctaagttagatatttatgtctcc |
421 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38087965 |
aaaaccatatctatcagcataggcaaattgaatccgtctccaatggaaaagttttggtctctaatctcttgtctcttctaagttagatatttatgtctcc |
38087866 |
T |
|
| Q |
422 |
atacaaactgactatgtgtttggtaatatata |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
38087865 |
atacaaactgactatgtgtttggtaatatata |
38087834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University