View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17543_low_13 (Length: 401)
Name: NF17543_low_13
Description: NF17543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17543_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 23 - 385
Target Start/End: Complemental strand, 38991368 - 38991006
Alignment:
| Q |
23 |
agagcaccctcttctaagagatctcggggcagaccaaagggctccaaaaacaagcccaagccacctgcggtggttatggtagagcctcaaacattaatga |
122 |
Q |
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| T |
38991368 |
agagcaccctcctctaagagatctcgtggcagaccaaagggctccaaaaacaagcccaagacacctgcggtggttatggtagagcctcaaacattaatga |
38991269 |
T |
|
| Q |
123 |
aacaaatatttattgaaatccctgctgggtatgatgttttggagtccatcatcaagatggcttggcgtcatgaagctgacatcacagtgctgagaggttc |
222 |
Q |
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| T |
38991268 |
aacaaatatttattgaaatccctgctgggtatgatgttttggagtccatcatcaagatggcttggcgtcatgaagctgacatcacagtgctgagaggttt |
38991169 |
T |
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| Q |
223 |
tggtattgtctctgacatcaccattcacaactcgttatcccataccccaccactcactattgaaggacctgtccaaatgacgtctctctctggcacttat |
322 |
Q |
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| T |
38991168 |
tggtattgtctctgacatcaccattcacagctcgttatctcataccccaccactcactattgaaggacctgtccaaatgacgtctctctctggcacttat |
38991069 |
T |
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| Q |
323 |
gtcaatcccaatgttgataatgttccttctgaagtcattgccaaccctgcatgttcttctttt |
385 |
Q |
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| T |
38991068 |
gtcaatcccaatgttgataatgttccttctgaagtcattgccaaccctgcatgttcttctttt |
38991006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 38 - 370
Target Start/End: Original strand, 38954422 - 38954754
Alignment:
| Q |
38 |
aagagatctcggggcagaccaaagggctccaaaaacaagcccaagccacctgcggtggttatggtagagcctcaaacattaatgaaacaaatatttattg |
137 |
Q |
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| T |
38954422 |
aagagatcaaggggtagatcaaagggctccaaaaataaacccaaacccccagtggtgatcaccgtagagcctgaaagttttatgaaacaaatttttatcg |
38954521 |
T |
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| Q |
138 |
aaatccctgctgggtatgatgttttggagtccatcatcaagatggcttggcgtcatgaagctgacatcacagtgctgagaggttctggtattgtctctga |
237 |
Q |
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| T |
38954522 |
aaatatcagctggatgtgatgttgtggagtccatcatcaagatggcttggcgtcatcaagctgatatctcagtaatgagaggttccggtcttgtctctaa |
38954621 |
T |
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| Q |
238 |
catcaccattcacaactcgttatcccataccccaccactcactattgaaggacctgtccaaatgacgtctctctctggcacttatgtcaatcccaatgtt |
337 |
Q |
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| T |
38954622 |
tattaccatccgtaactcgacatctcattcccctgcactaactattgaaggacccatcaaaatgatgtctctctctggcacttacatcaatcccaattct |
38954721 |
T |
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| Q |
338 |
gataatgttccttctgaagtcattgccaaccct |
370 |
Q |
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|||| ||||||||||||| |||| |||||||| |
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| T |
38954722 |
gatactgttccttctgaattcatcaccaaccct |
38954754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 83 - 221
Target Start/End: Complemental strand, 18528173 - 18528036
Alignment:
| Q |
83 |
ccacctgcggtggttatggtagagcctcaaacattaatgaaacaaatatttattgaaatccctgctgggtatgatgttttggagtccatcatcaagatgg |
182 |
Q |
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||||||| |||| |||||||||||||| |||| ||| |||||||||| |||||| |||||||| || |||||||||| |||||||||||||||| ||| |
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| T |
18528173 |
ccacctgtggtgattatggtagagcctgaaacctta-tgaaacaaatttttattaaaatccctattgagtatgatgttgtggagtccatcatcaaaatga |
18528075 |
T |
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| Q |
183 |
cttggcgtcatgaagctgacatcacagtgctgagaggtt |
221 |
Q |
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||||||| || |||| |||||| ||||||||||||||| |
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| T |
18528074 |
attggcgttatcaagcagacatctcagtgctgagaggtt |
18528036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 55 - 222
Target Start/End: Original strand, 18527758 - 18527925
Alignment:
| Q |
55 |
accaaagggctccaaaaacaagcccaagccacctgcggtggttatggtagagcctcaaacattaatgaaacaaatatttattgaaatccctgctgggtat |
154 |
Q |
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||||||||||| ||| ||||| ||||| ||| || |||| | |||||||| || |||| || ||||||| ||| |||||||||||| ||||| ||| |
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| T |
18527758 |
accaaagggctacaagaacaaacccaaaccatatgtggtgatcatggtagatcccaaaacttttatgaaactaatttttattgaaatctctgctatatat |
18527857 |
T |
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| Q |
155 |
gatgttttggagtccatcatcaagatggcttggcgtcatgaagctgacatcacagtgctgagaggttc |
222 |
Q |
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||| || |||| ||||||||| |||||||||||| ||| || |||||| | ||| |||||||||| |
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| T |
18527858 |
gattttatggaaaccatcatcaggatggcttggcgacatctagatgacatatctgtgatgagaggttc |
18527925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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