View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17543_low_14 (Length: 401)

Name: NF17543_low_14
Description: NF17543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17543_low_14
NF17543_low_14
[»] chr4 (8 HSPs)
chr4 (66-192)||(34967429-34967557)
chr4 (66-192)||(27742464-27742592)
chr4 (192-372)||(20147269-20147444)
chr4 (93-192)||(9117763-9117864)
chr4 (93-192)||(54207556-54207657)
chr4 (66-108)||(9117867-9117909)
chr4 (66-108)||(54207660-54207702)
chr4 (24-55)||(31307044-31307075)
[»] chr7 (7 HSPs)
chr7 (192-372)||(25100942-25101118)
chr7 (93-192)||(16849719-16849815)
chr7 (66-143)||(31738592-31738669)
chr7 (66-113)||(16849674-16849721)
chr7 (24-55)||(29059937-29059968)
chr7 (24-55)||(31492235-31492266)
chr7 (25-55)||(11486722-11486752)
[»] chr8 (5 HSPs)
chr8 (93-192)||(11465902-11466003)
chr8 (93-192)||(3428799-3428900)
chr8 (66-113)||(3428898-3428945)
chr8 (66-113)||(11466001-11466048)
chr8 (24-55)||(2744065-2744096)
[»] chr3 (9 HSPs)
chr3 (93-192)||(11031396-11031497)
chr3 (93-192)||(18319924-18320025)
chr3 (93-192)||(46920426-46920527)
chr3 (66-143)||(52126041-52126118)
chr3 (66-113)||(18320023-18320070)
chr3 (66-113)||(46920525-46920572)
chr3 (24-55)||(8757476-8757507)
chr3 (22-55)||(22288365-22288398)
chr3 (22-55)||(22288651-22288684)
[»] chr1 (5 HSPs)
chr1 (93-192)||(38007319-38007420)
chr1 (66-143)||(51083719-51083796)
chr1 (66-108)||(38007423-38007465)
chr1 (22-55)||(18428120-18428153)
chr1 (22-55)||(36806741-36806774)
[»] scaffold0182 (1 HSPs)
scaffold0182 (24-55)||(26463-26494)
[»] chr2 (4 HSPs)
chr2 (24-54)||(31579208-31579238)
chr2 (24-54)||(42745095-42745125)
chr2 (24-52)||(17981629-17981657)
chr2 (27-55)||(44732587-44732615)
[»] chr5 (1 HSPs)
chr5 (22-55)||(10592057-10592090)


Alignment Details
Target: chr4 (Bit Score: 106; Significance: 6e-53; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 66 - 192
Target Start/End: Complemental strand, 34967557 - 34967429
Alignment:
Q  66 tacaccataaaataaaattatgttttcatatagttgattgatagaatagaacaatattgttgaaaacttgaatcgacac--aaatattattttgcacaaa 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||| |||||||||||    
T  34967557 tacaccataaaataaaattatgttttcatatagttgattgatagaatagaacaatattgttgaaaacttgaatagacacataaatatttttttgcacaaa 34967458  T
Q  164 ccaaaaagaacataaagaaataatagatg 192  Q
    ||||||| |||||||||||||||||||||    
T  34967457 ccaaaaaaaacataaagaaataatagatg 34967429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 66 - 192
Target Start/End: Original strand, 27742464 - 27742592
Alignment:
Q  66 tacaccataaaataaaattatgttttcatatagttgattgatagaatagaacaatattgttgaaaacttgaatcgacac--aaatattattttgcacaaa 163  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||  ||||||| |||||||||||    
T  27742464 tacatcataaaataaaattatgttttcatatatttgattgatagaatagaacaatattgttgaaaacttgaatagacacataaatatttttttgcacaaa 27742563  T
Q  164 ccaaaaagaacataaagaaataatagatg 192  Q
    |||||||||||||||||||||||||||||    
T  27742564 ccaaaaagaacataaagaaataatagatg 27742592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 192 - 372
Target Start/End: Complemental strand, 20147444 - 20147269
Alignment:
Q  192 gtcaaacgcttaaacactctcctttcatcaaacgccctgccattggaccacgtaatctgtattttaatnnnnnnnnttgtttaccggttggcttttcacg 291  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||        |||  |||||||||||||||||||    
T  20147444 gtcaaacgcttaaacgctctcctttcatcaaacgccctgccattggaccacgtaatctgtattttaataattttttttggctaccggttggcttttcacg 20147345  T
Q  292 tttaactttttaaatttttcattgtttgctnnnnnnnnnnnncttcattcattgtatttctatggacagaaagtcaataat 372  Q
    ||||||||||| ||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||    
T  20147344 tttaacttttt-aatttttcattgtttgct----aaaaaaaacttcattcattgtatttctatggacagaaagtcaataat 20147269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 93 - 192
Target Start/End: Complemental strand, 9117864 - 9117763
Alignment:
Q  93 atatagttgattgatagaatagaacaatattgttgaaaacttgaatcgacaca--aatattattttgcacaaaccaaaaagaacataaagaaataataga 190  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||| ||||||  |||||| ||||||||||||||||||||||||||||||||||||||    
T  9117864 atatagttgattgatataatagaacaatattgttgaaaactttaatagacacataaatatttttttgcacaaaccaaaaagaacataaagaaataataga 9117765  T
Q  191 tg 192  Q
    ||    
T  9117764 tg 9117763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 93 - 192
Target Start/End: Complemental strand, 54207657 - 54207556
Alignment:
Q  93 atatagttgattgatagaatagaacaatattgttgaaaacttgaatcgacaca--aatattattttgcacaaaccaaaaagaacataaagaaataataga 190  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||| ||||||  |||||| ||||||||||||||||||||||||||||||||||||||    
T  54207657 atatagttgattgatataatagaacaatattgttgaaaactttaatagacacataaatatttttttgcacaaaccaaaaagaacataaagaaataataga 54207558  T
Q  191 tg 192  Q
    ||    
T  54207557 tg 54207556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 9117909 - 9117867
Alignment:
Q  66 tacaccataaaataaaattatgttttcatatagttgattgata 108  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  9117909 tacaccatgaaataaaattatgttttcatatagttgattgata 9117867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 54207702 - 54207660
Alignment:
Q  66 tacaccataaaataaaattatgttttcatatagttgattgata 108  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  54207702 tacaccatgaaataaaattatgttttcatatagttgattgata 54207660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 55
Target Start/End: Complemental strand, 31307075 - 31307044
Alignment:
Q  24 gcagttgcgcgcggaggatacccggtttacac 55  Q
    ||||||||||||||||||||||||||||||||    
T  31307075 gcagttgcgcgcggaggatacccggtttacac 31307044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 192 - 372
Target Start/End: Complemental strand, 25101118 - 25100942
Alignment:
Q  192 gtcaaacgcttaaacactctcctttcatcaaacgccctgccattggaccacgtaatctgtattttaatnnnnnnnnttgtttaccggttggcttttcacg 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||  |||||||||||||||||||    
T  25101118 gtcaaacgcttaaacactctcctttcatcaaacgccctgccattggaccacgtaatctgtattttaataaaaaaaattggctaccggttggcttttcacg 25101019  T
Q  292 tttaactttttaaatttttcattgtttgctnnnnnnnnnnnncttcattcattgtatttctatggacagaaagtcaataat 372  Q
    ||||||||||| ||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||    
T  25101018 tttaacttttt-aatttttcattgtttgct---aaaaaaaaacttcattcattgtatttctatggacagaaagtcaataat 25100942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 93 - 192
Target Start/End: Original strand, 16849719 - 16849815
Alignment:
Q  93 atatagttgattgatagaatagaacaatattgttgaaaacttgaatcgacacaaatattattttgcacaaaccaaaaagaacataaagaaataatagatg 192  Q
    ||||||||||||| || |||||||||||||||||||||||||||    ||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  16849719 atatagttgattgttataatagaacaatattgttgaaaacttgac---acataaatatttttttgcacaaaccaaaaagaacataaagaaataatagatg 16849815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 31738592 - 31738669
Alignment:
Q  66 tacaccataaaataaaattatgttttcatatagttgattgatagaatagaacaatattgttgaaaacttgaatcgaca 143  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||| |||||| ||||    
T  31738592 tacaccataaaataaaattatgtttacatatagttaattgatagaatagaaaaatattgttgaaaatttgaatagaca 31738669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 66 - 113
Target Start/End: Original strand, 16849674 - 16849721
Alignment:
Q  66 tacaccataaaataaaattatgttttcatatagttgattgatagaata 113  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||    
T  16849674 tacaccatgaaataaaattatgttttcatatagttgattgatagaata 16849721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 55
Target Start/End: Original strand, 29059937 - 29059968
Alignment:
Q  24 gcagttgcgcgcggaggatacccggtttacac 55  Q
    ||||||||||||||||||||||||||||||||    
T  29059937 gcagttgcgcgcggaggatacccggtttacac 29059968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 55
Target Start/End: Original strand, 31492235 - 31492266
Alignment:
Q  24 gcagttgcgcgcggaggatacccggtttacac 55  Q
    ||||||||||||||||||||||||||||||||    
T  31492235 gcagttgcgcgcggaggatacccggtttacac 31492266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 55
Target Start/End: Complemental strand, 11486752 - 11486722
Alignment:
Q  25 cagttgcgcgcggaggatacccggtttacac 55  Q
    |||||||||||||||||||||||||||||||    
T  11486752 cagttgcgcgcggaggatacccggtttacac 11486722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 8e-37; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 93 - 192
Target Start/End: Complemental strand, 11466003 - 11465902
Alignment:
Q  93 atatagttgattgatagaatagaacaatattgttgaaaacttgaatcgacac--aaatattattttgcacaaaccaaaaagaacataaagaaataataga 190  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||||  ||||||| ||||||||||||||||||||||||||||||||||||||    
T  11466003 atatagttgattgatataatagaacaatattgttgaaaacttgaatagacacataaatatttttttgcacaaaccaaaaagaacataaagaaataataga 11465904  T
Q  191 tg 192  Q
    ||    
T  11465903 tg 11465902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 93 - 192
Target Start/End: Complemental strand, 3428900 - 3428799
Alignment:
Q  93 atatagttgattgatagaatagaacaatattgttgaaaacttgaatcgacaca--aatattattttgcacaaaccaaaaagaacataaagaaataataga 190  Q
    ||||||||||||| || ||||||||||||||||||||||||||||| ||||||  |||||| ||||||||||||||||||||||||||||||||||||||    
T  3428900 atatagttgattgttataatagaacaatattgttgaaaacttgaatagacacataaatatttttttgcacaaaccaaaaagaacataaagaaataataga 3428801  T
Q  191 tg 192  Q
    ||    
T  3428800 tg 3428799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 66 - 113
Target Start/End: Complemental strand, 3428945 - 3428898
Alignment:
Q  66 tacaccataaaataaaattatgttttcatatagttgattgatagaata 113  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||    
T  3428945 tacaccatgaaataaaattatgttttcatatagttgattgatagaata 3428898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 66 - 113
Target Start/End: Complemental strand, 11466048 - 11466001
Alignment:
Q  66 tacaccataaaataaaattatgttttcatatagttgattgatagaata 113  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||    
T  11466048 tacaccatgaaataaaattatgttttcatatagttgattgatagaata 11466001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 55
Target Start/End: Original strand, 2744065 - 2744096
Alignment:
Q  24 gcagttgcgcgcggaggatacccggtttacac 55  Q
    ||||||||||||||||||||||||||||||||    
T  2744065 gcagttgcgcgcggaggatacccggtttacac 2744096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 93 - 192
Target Start/End: Original strand, 11031396 - 11031497
Alignment:
Q  93 atatagttgattgatagaatagaacaatattgttgaaaacttgaatcgacaca--aatattattttgcacaaaccaaaaagaacataaagaaataataga 190  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||| ||||||  |||||| ||||||||||||||||||||||||||||||||||||||    
T  11031396 atatagttgattgatataatagaacaatattgttgaaaactttaatagacacataaatatttttttgcacaaaccaaaaagaacataaagaaataataga 11031495  T
Q  191 tg 192  Q
    ||    
T  11031496 tg 11031497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 93 - 192
Target Start/End: Complemental strand, 18320025 - 18319924
Alignment:
Q  93 atatagttgattgatagaatagaacaatattgttgaaaacttgaatcgacac--aaatattattttgcacaaaccaaaaagaacataaagaaataataga 190  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||||  ||||||  ||||||||||||||||||||||||||||||||||||||    
T  18320025 atatagttgattgatataatagaacaatattgttgaaaacttgaatagacacataaatatgtttttgcacaaaccaaaaagaacataaagaaataataga 18319926  T
Q  191 tg 192  Q
    ||    
T  18319925 tg 18319924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 93 - 192
Target Start/End: Complemental strand, 46920527 - 46920426
Alignment:
Q  93 atatagttgattgatagaatagaacaatattgttgaaaacttgaatcgacaca--aatattattttgcacaaaccaaaaagaacataaagaaataataga 190  Q
    ||||||||||||| || ||||||||||||||||||||||||||||| ||||||  |||||| ||||||||||||||||||||||||||||||||||||||    
T  46920527 atatagttgattgttataatagaacaatattgttgaaaacttgaatagacacataaatatttttttgcacaaaccaaaaagaacataaagaaataataga 46920428  T
Q  191 tg 192  Q
    ||    
T  46920427 tg 46920426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 52126041 - 52126118
Alignment:
Q  66 tacaccataaaataaaattatgttttcatatagttgattgatagaatagaacaatattgttgaaaacttgaatcgaca 143  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||| |||||| ||||    
T  52126041 tacaccataaaataaaattatgtttacatatagttaattgatagaatagaaaaatattgttgaaaatttgaatagaca 52126118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 66 - 113
Target Start/End: Complemental strand, 18320070 - 18320023
Alignment:
Q  66 tacaccataaaataaaattatgttttcatatagttgattgatagaata 113  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||    
T  18320070 tacaccatgaaataaaattatgttttcatatagttgattgatagaata 18320023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 66 - 113
Target Start/End: Complemental strand, 46920572 - 46920525
Alignment:
Q  66 tacaccataaaataaaattatgttttcatatagttgattgatagaata 113  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||    
T  46920572 tacaccatgaaataaaattatgttttcatatagttgattgatagaata 46920525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 55
Target Start/End: Original strand, 8757476 - 8757507
Alignment:
Q  24 gcagttgcgcgcggaggatacccggtttacac 55  Q
    ||||||||||||||||||||||||||||||||    
T  8757476 gcagttgcgcgcggaggatacccggtttacac 8757507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 22288365 - 22288398
Alignment:
Q  22 ctgcagttgcgcgcggaggatacccggtttacac 55  Q
    ||||||||| ||||||||||||||||||||||||    
T  22288365 ctgcagttgtgcgcggaggatacccggtttacac 22288398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 22288651 - 22288684
Alignment:
Q  22 ctgcagttgcgcgcggaggatacccggtttacac 55  Q
    ||||||||| ||||||||||||||||||||||||    
T  22288651 ctgcagttgtgcgcggaggatacccggtttacac 22288684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 93 - 192
Target Start/End: Complemental strand, 38007420 - 38007319
Alignment:
Q  93 atatagttgattgatagaatagaacaatattgttgaaaacttgaatcgacaca--aatattattttgcacaaaccaaaaagaacataaagaaataataga 190  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||| ||||||  |||||| ||||||||||||||||||||||||||||||||||||||    
T  38007420 atatagttgattgatataatagaacaatattgttgaaaactttaatagacacataaatatttttttgcacaaaccaaaaagaacataaagaaataataga 38007321  T
Q  191 tg 192  Q
    ||    
T  38007320 tg 38007319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 51083796 - 51083719
Alignment:
Q  66 tacaccataaaataaaattatgttttcatatagttgattgatagaatagaacaatattgttgaaaacttgaatcgaca 143  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||| |||||| ||||    
T  51083796 tacaccataaaataaaattatgtttacatatagttaattgatagaatagaaaaatattgttgaaaatttgaatagaca 51083719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 38007465 - 38007423
Alignment:
Q  66 tacaccataaaataaaattatgttttcatatagttgattgata 108  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  38007465 tacaccatgaaataaaattatgttttcatatagttgattgata 38007423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 18428153 - 18428120
Alignment:
Q  22 ctgcagttgcgcgcggaggatacccggtttacac 55  Q
    |||||||||||||||||||||||||| |||||||    
T  18428153 ctgcagttgcgcgcggaggatacccgatttacac 18428120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 36806741 - 36806774
Alignment:
Q  22 ctgcagttgcgcgcggaggatacccggtttacac 55  Q
    |||||||||| |||||||||||||||||||||||    
T  36806741 ctgcagttgcacgcggaggatacccggtttacac 36806774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 55
Target Start/End: Original strand, 26463 - 26494
Alignment:
Q  24 gcagttgcgcgcggaggatacccggtttacac 55  Q
    ||||||||||||||||||||||||||||||||    
T  26463 gcagttgcgcgcggaggatacccggtttacac 26494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 54
Target Start/End: Complemental strand, 31579238 - 31579208
Alignment:
Q  24 gcagttgcgcgcggaggatacccggtttaca 54  Q
    |||||||||||||||||||||||||||||||    
T  31579238 gcagttgcgcgcggaggatacccggtttaca 31579208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 54
Target Start/End: Complemental strand, 42745125 - 42745095
Alignment:
Q  24 gcagttgcgcgcggaggatacccggtttaca 54  Q
    |||||||||||||||||||||||||||||||    
T  42745125 gcagttgcgcgcggaggatacccggtttaca 42745095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 17981629 - 17981657
Alignment:
Q  24 gcagttgcgcgcggaggatacccggttta 52  Q
    |||||||||||||||||||||||||||||    
T  17981629 gcagttgcgcgcggaggatacccggttta 17981657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 55
Target Start/End: Complemental strand, 44732615 - 44732587
Alignment:
Q  27 gttgcgcgcggaggatacccggtttacac 55  Q
    |||||||||||||||||||||||||||||    
T  44732615 gttgcgcgcggaggatacccggtttacac 44732587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 10592057 - 10592090
Alignment:
Q  22 ctgcagttgcgcgcggaggatacccggtttacac 55  Q
    |||||||||||||||||||||||||| |||||||    
T  10592057 ctgcagttgcgcgcggaggatacccgatttacac 10592090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University