View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17543_low_15 (Length: 391)
Name: NF17543_low_15
Description: NF17543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17543_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 16 - 388
Target Start/End: Complemental strand, 1197149 - 1196780
Alignment:
| Q |
16 |
caaagaacaatggttatgtcctaaaagggtattcagctgtttatattggagaagaacttaagaggttcatcataccaccaactgaatatttgggtcatca |
115 |
Q |
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| T |
1197149 |
caaacaacaatggttctgttccaaaaggatatttagctgtttgtgttggagaagagcttaagaggttcatcatacca---actgaatatttgggtcatca |
1197053 |
T |
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| Q |
116 |
agcttttcagattcttttgagagaagctgaagaagaatttgggtttcaacaagctggtgttttgaggattccttgtgaagtctctacttttgagtgtatt |
215 |
Q |
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| T |
1197052 |
agcttttcagattcttttgagagaagctgaagaagaatttgggtttcaacaagctggtgtattgaggattccttgtgaagtctctacttttgagagtatt |
1196953 |
T |
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| Q |
216 |
ttgaagatggttgaagatcatggaaagaataaggacaagttttcaaatcaagaatgtagatcaattagcattgaagagatgatgggttattgttctttag |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1196952 |
ttgaagatggttgaagatcatggaaagaataaggacaagttttcaaatcaagaatgtagatcaattagcattgaagagatgatgggttattgttctttag |
1196853 |
T |
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| Q |
316 |
aaaatcaacttgcttgttctcatcatcctcaaagtccattgtgtagataaatataataattaatattcttgga |
388 |
Q |
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| T |
1196852 |
aaaatcaacttgcttgttctcatcatcctcaaagtccattgtgtagataaatataataattaatattattgga |
1196780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 16 - 378
Target Start/End: Original strand, 7289430 - 7289790
Alignment:
| Q |
16 |
caaagaacaatggttatgtcctaaaagggtattcagctgtttatattggagaagaacttaagaggttcatcataccaccaactgaatatttgggtcatca |
115 |
Q |
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||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7289430 |
caaagaacaatggttatgtcctaaaagggtatttagctgtttgtattggagaagaacttaagaggttcatcataccaccaactgaatatttgtgtcatca |
7289529 |
T |
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| Q |
116 |
agcttttcagattcttttgagagaagctgaagaagaatttgggtttcaacaagctggtgttttgaggattccttgtgaagtctctacttttgagtgtatt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
7289530 |
agcttttcagattcttttgagagaagctgaagaagaatttgggtttcaacaagctggtgttttgaggattctttgtgaagtctctacttttgagtgtatt |
7289629 |
T |
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| Q |
216 |
ttgaagatggttgaagatcatggaaagaataaggacaagttttcaaatcaagaatgtagatcaattagcattgaagagatgatgggttattgttctttag |
315 |
Q |
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||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||| |||||||||| |||||| ||||||||||||||| |
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| T |
7289630 |
ttgaagatggttgaagatcatggaaagaataagga-tagtgttcaaa-caagaatgtagatcaattggcattgaagaaatgatgagttattgttctttag |
7289727 |
T |
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| Q |
316 |
aaaatcaacttgcttgttctcatcatcctcaaagtccattgtgtagataaatataataattaa |
378 |
Q |
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||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7289728 |
aaaattaactcgtttgttctcatcatcctcaaagtccattgtgtagataaatataataattaa |
7289790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 92 - 231
Target Start/End: Original strand, 50471179 - 50471318
Alignment:
| Q |
92 |
accaactgaatatttgggtcatcaagcttttcagattcttttgagagaagctgaagaagaatttgggtttcaacaagctggtgttttgaggattccttgt |
191 |
Q |
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|||||| || ||||||| ||||||||| ||||| || | | ||||||||||||||||||||||||||| ||||| |||||||| |||| ||||||||| |
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| T |
50471179 |
accaaccgagtatttggctcatcaagcctttcatatattactcagagaagctgaagaagaatttgggtttgaacaaactggtgttctgagaattccttgt |
50471278 |
T |
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| Q |
192 |
gaagtctctacttttgagtgtattttgaagatggttgaag |
231 |
Q |
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| T |
50471279 |
gaagtttcagtgtttgagagtatcttgaagatggttgaag |
50471318 |
T |
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