View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17543_low_17 (Length: 344)
Name: NF17543_low_17
Description: NF17543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17543_low_17 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 269 - 334
Target Start/End: Original strand, 18336927 - 18336992
Alignment:
| Q |
269 |
actggtatttttgtttgagccgtacgagatgaaattctcatatacggttctcaggggggtcctttg |
334 |
Q |
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| T |
18336927 |
actggtatttttgtttgagccgtacgagatgaaattctcatatacggttctcaggggggtcctttg |
18336992 |
T |
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Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 1917686 - 1917623
Alignment:
| Q |
19 |
ttatcttctatacactcaaaatcaattgtcaatactcaataatgcagaaatattattacttttt |
82 |
Q |
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| T |
1917686 |
ttatcttctagacactcaaaatcaattgtcaaaactcaataatgcagaaatattattacttttt |
1917623 |
T |
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Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 269 - 334
Target Start/End: Complemental strand, 26614447 - 26614382
Alignment:
| Q |
269 |
actggtatttttgtttgagccgtacgagatgaaattctcatatacggttctcaggggggtcctttg |
334 |
Q |
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| T |
26614447 |
actggtatttttgtttgagccgtacgagatgaaattctcatatacggttctcagggggatcctttg |
26614382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 279 - 334
Target Start/End: Complemental strand, 23927236 - 23927181
Alignment:
| Q |
279 |
ttgtttgagccgtacgagatgaaattctcatatacggttctcaggggggtcctttg |
334 |
Q |
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| T |
23927236 |
ttgtttgagccgtacgagatgaaattctcatatacggttcttaggggggtcctttg |
23927181 |
T |
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Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 17489508 - 17489445
Alignment:
| Q |
19 |
ttatcttctatacactcaaaatcaattgtcaatactcaataatgcagaaatattattacttttt |
82 |
Q |
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| T |
17489508 |
ttatcttctatacactcaaaatcaattgtcaaaactcaataatgcagaaagattattacttttt |
17489445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 17563706 - 17563769
Alignment:
| Q |
19 |
ttatcttctatacactcaaaatcaattgtcaatactcaataatgcagaaatattattacttttt |
82 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
17563706 |
ttatcttctatacactcaaaatcaattgtcaaaactcaataatgcagaaagattattacttttt |
17563769 |
T |
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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 268 - 334
Target Start/End: Complemental strand, 13090280 - 13090214
Alignment:
| Q |
268 |
tactggtatttttgtttgagccgtacgagatgaaattctcatatacggttctcaggggggtcctttg |
334 |
Q |
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|||| ||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
13090280 |
tactagtatttttgtttgagtcatacgagatgaaattctcatatacggttctcgggggggtcctttg |
13090214 |
T |
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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 282 - 334
Target Start/End: Complemental strand, 38743981 - 38743929
Alignment:
| Q |
282 |
tttgagccgtacgagatgaaattctcatatacggttctcaggggggtcctttg |
334 |
Q |
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||||||||||||||||||||||||||||||| |||| ||| |||||||||||| |
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| T |
38743981 |
tttgagccgtacgagatgaaattctcatatatggttgtcaagggggtcctttg |
38743929 |
T |
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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 273 - 324
Target Start/End: Original strand, 5336139 - 5336190
Alignment:
| Q |
273 |
gtatttttgtttgagccgtacgagatgaaattctcatatacggttctcaggg |
324 |
Q |
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|||||||||| ||||||||||||||| | ||||||||||||||||||||||| |
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| T |
5336139 |
gtatttttgtatgagccgtacgagattatattctcatatacggttctcaggg |
5336190 |
T |
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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 315
Target Start/End: Original strand, 272191 - 272223
Alignment:
| Q |
283 |
ttgagccgtacgagatgaaattctcatatacgg |
315 |
Q |
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|||||||||||||||||||||| |||||||||| |
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| T |
272191 |
ttgagccgtacgagatgaaattttcatatacgg |
272223 |
T |
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