View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17543_low_18 (Length: 336)
Name: NF17543_low_18
Description: NF17543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17543_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 16947219 - 16947520
Alignment:
| Q |
1 |
atatctttgtcaacatgagtagaagtagccatgtttgtgaaaattttgagacacaatagtaaatcaaactatgaaagaatttggttggtttattataaat |
100 |
Q |
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| T |
16947219 |
atatctttgtcaacatgagtagaagtagccatgtttgtgaatgttttgagacacaatagtaaattaaactatgaaagga------------attataaat |
16947306 |
T |
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| Q |
101 |
ttgtagaatttattgggttagaattttaactttattatgtgtaaagttgtgttaatagatagagactcgaatgtttttatgtgatggatgttatgtatgt |
200 |
Q |
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| T |
16947307 |
ttgtagaatttattgggttagaattttaactttattatgtgtaaagttgtgttaatagatagagactcgaatgtttttatgtgatggatgttatgtatgt |
16947406 |
T |
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| Q |
201 |
tgaagattcatttgcatataaagttggaacattggtgtcatattttcatgttacgtgattgaataatcgataagggaagattttgaccttgctattaatc |
300 |
Q |
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| T |
16947407 |
tgaagattcatttgcatataaagttggaacattggtgtcatattttcatgttacgtgattgaataatcaataagggaagattttgaccttgctattaatc |
16947506 |
T |
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| Q |
301 |
agccatggtctatt |
314 |
Q |
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| T |
16947507 |
agccatggtctatt |
16947520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 90 - 229
Target Start/End: Original strand, 16958648 - 16958778
Alignment:
| Q |
90 |
ttattataaatttgtagaatttattgggttagaattttaactttattatgtgtaaagttgtgttaatagatagagactcgaatgtttttatgtgatggat |
189 |
Q |
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||||||||||||||||||||||||| ||| || |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
16958648 |
ttattataaatttgtagaatttattaggtaggatttttgactttattatgtgtaaagtta---------atagagactcgaatgtttttatgtgatggat |
16958738 |
T |
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| Q |
190 |
gttatgtatgttgaagattcatttgcatataaagttggaa |
229 |
Q |
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| T |
16958739 |
gttatgtatgttgtagattcatttgcatataaagttggaa |
16958778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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