View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17543_low_20 (Length: 324)
Name: NF17543_low_20
Description: NF17543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17543_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 7489026 - 7489332
Alignment:
| Q |
1 |
tcctttcttattgtaacgattcaaaggctttttgtaaaacaaaaagtcataagagattaaaattcacgtataagtttcgaatttcacataaaaataaatt |
100 |
Q |
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|||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||| |
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| T |
7489026 |
tcctttcttattgtaatgattcaaaggattattgtaaaacaaaaagtcataagagattaaaattcaagtaaaagtt-cgaatttcacataaaaataaatt |
7489124 |
T |
|
| Q |
101 |
gagtttaatattannnnnnncaagaaattaaagtggatattaaatannnnnnnnnnaaaa-tttctgcaaaacgaagccgttttgttacaattagattca |
199 |
Q |
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||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7489125 |
gagtttaatattatttttttcaagaaattaaagtggatattaaatatttttttaaaaaaaatttctgcaaaacgaagccgttttgttacaattagattca |
7489224 |
T |
|
| Q |
200 |
cctccatcacaattcataaaccctaaatcaaatcctcttctctcgctcctcaaccctaaa-ccccaaacgccggcaacaccaccaccgcacaattccacc |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
7489225 |
cctccatcacaattcataaaccctaaatcaaatcctcttctctcactcctcaaccctaaacccccaaacaccggcaacaccaccaccgcacaattccacc |
7489324 |
T |
|
| Q |
299 |
gtcgccac |
306 |
Q |
| |
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|||||||| |
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| T |
7489325 |
gtcgccac |
7489332 |
T |
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