View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17543_low_22 (Length: 293)
Name: NF17543_low_22
Description: NF17543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17543_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 14192643 - 14192377
Alignment:
| Q |
18 |
gagatgattcaaatgccaagcaaaaaacaccatcagcaaccgaaacaaatgtgctaataggatgcaaattgatatctgcacctttaaaatgcattgtgat |
117 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
14192643 |
gagatgattcaaaagccaagcaaaaaacaccatcagcaaccgaaacaaatgtgctaataggatgcaaatcgacatctgcacctttaaaatgcattgtgat |
14192544 |
T |
|
| Q |
118 |
tataggaaaatcatatccctcagctttgacactatagcaaaggtttaatgtttgagtaggatcgtcaacacgttctaacttcaccaaatctaccacagca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14192543 |
tataggaaaatcatatccctcagctttgacactatagcaaaggtttaatgtttgagtaggatcgtcaacacgttctaacttcaccaaatctaccacagca |
14192444 |
T |
|
| Q |
218 |
gattccaaaaaagagtaatcatcttttgttaaacttgttaatgttgtacccgaatcaatgatgatgt |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
14192443 |
gattccaaaaaagagtaatcatcttttgttaaacttgttaatgttgtacccgaatcaattatgatgt |
14192377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 61 - 162
Target Start/End: Complemental strand, 14183650 - 14183549
Alignment:
| Q |
61 |
aacaaatgtgctaataggatgcaaattgatatctgcacctttaaaatgcattgtgattataggaaaatcatatccctcagctttgacactatagcaaagg |
160 |
Q |
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||||||||| |||||||||||||| || | ||| |||||||||||||| | || |||||||||||||||||||| || | | |||| |||||||||||| |
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| T |
14183650 |
aacaaatgtactaataggatgcaacttaacatccgcacctttaaaatgtgtcgttattataggaaaatcatatccatctgatgtgacgctatagcaaagg |
14183551 |
T |
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| Q |
161 |
tt |
162 |
Q |
| |
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|| |
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| T |
14183550 |
tt |
14183549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 194
Target Start/End: Complemental strand, 40718420 - 40718274
Alignment:
| Q |
48 |
catcagcaaccgaaacaaatgtgctaataggatgcaaattgatatctgcacctttaaaatgcattgtgattataggaaaatcatatccctcagctttgac |
147 |
Q |
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|||| ||||| |||||||| || ||||| |||||||| || ||||| ||||||||||||||| ||| |||| |||||| | |||| || | | || |
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| T |
40718420 |
catcggcaacggaaacaaaggtactaatgggatgcaacttaatatccgcacctttaaaatgcgctgttattagaggaaagttatatatgtctgatgtggt |
40718321 |
T |
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| Q |
148 |
actatagcaaaggtttaatgtttgagtaggatcgtcaacacgttcta |
194 |
Q |
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||||||||||||||||||| |||||| ||||| |||||||| |||| |
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| T |
40718320 |
actatagcaaaggtttaattgttgagttggatcatcaacacgctcta |
40718274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 35 - 225
Target Start/End: Complemental strand, 34646732 - 34646542
Alignment:
| Q |
35 |
aagcaaaaaacaccatcagcaaccgaaacaaatgtgctaataggatgcaaattgatatctgcacctttaaaatgcattgtgattataggaaaatcatatc |
134 |
Q |
| |
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||||||| || |||||||| || | |||||| || ||||||| |||||| | | ||| |||||||||||||| | ||||||||||||||||||||| |
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| T |
34646732 |
aagcaaacaataccatcagtaattggaacaaaggtactaatagaatgcaactcaacatcggcacctttaaaatgtacggtgattataggaaaatcatatt |
34646633 |
T |
|
| Q |
135 |
cctcagctttgacactatagcaaaggtttaatgtttgagtaggatcgtcaacacgttctaacttcaccaaatctaccacagcagattccaa |
225 |
Q |
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| | | ||| | ||||||||| ||| | ||| |||| ||||||| |||||||| |||| ||||||||||| |||||||| |||||||| |
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| T |
34646632 |
catttgatttcaaactatagcataggctgaattgttgattaggatcatcaacacgatctagtttcaccaaatccaccacagctgattccaa |
34646542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 35 - 225
Target Start/End: Complemental strand, 34666426 - 34666236
Alignment:
| Q |
35 |
aagcaaaaaacaccatcagcaaccgaaacaaatgtgctaataggatgcaaattgatatctgcacctttaaaatgcattgtgattataggaaaatcatatc |
134 |
Q |
| |
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||||||| || |||||||| || | |||||| || ||||||| |||||| | ||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
34666426 |
aagcaaacaataccatcagtaattggaacaaaggtactaatagaatgcaactcaatatcggcacctttaaaatgtgcggtgattataggaaaatcatatt |
34666327 |
T |
|
| Q |
135 |
cctcagctttgacactatagcaaaggtttaatgtttgagtaggatcgtcaacacgttctaacttcaccaaatctaccacagcagattccaa |
225 |
Q |
| |
|
| | | ||| | ||||||||| ||| | ||| |||| ||||||| |||||||| |||| ||||||||||| |||||||| |||||||| |
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| T |
34666326 |
catttgatttcaaactatagcataggctgaattgttgattaggatcatcaacacgatctagtttcaccaaatccaccacagctgattccaa |
34666236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 19648802 - 19648987
Alignment:
| Q |
18 |
gagatgattcaaatgccaagcaaaaaacaccatcagcaaccgaaacaaatgtgctaataggatgcaaattgatatctgcacctttaaaatgcattgtgat |
117 |
Q |
| |
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|||||||| ||| || ||||||| |||||||||||||| | |||| || ||||| || | ||| || |||||||||||||||||||| ||||| |
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| T |
19648802 |
gagatgatgtaaaagctaagcaaaccacaccatcagcaacatgagcaaaggtactaattgggttcaacttaatatctgcacctttaaaatgtgcagtgat |
19648901 |
T |
|
| Q |
118 |
tataggaaaatcatatccctcagctttgacactatagcaaaggtttaatgtttgagtaggatcgtcaacacgttctaacttcacca |
203 |
Q |
| |
|
|||||||||||||||| || | | ||| |||||| |||||||||||| |||| ||||||| |||||||| |||| ||||||| |
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| T |
19648902 |
tataggaaaatcatattggtctgatgtgatactataacaaaggtttaatagttgattaggatcatcaacacgatctagtttcacca |
19648987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 133
Target Start/End: Complemental strand, 1390820 - 1390719
Alignment:
| Q |
32 |
gccaagcaaaaaacaccatcagcaaccgaaacaaatgtgctaataggatgcaaattgatatctgcacctttaaaatgcattgtgattataggaaaatcat |
131 |
Q |
| |
|
||||| |||| ||| ||||| ||||| |||||| |||||||||| ||||| || ||||||||||||| |||||| ||||||||||||||||||| |
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| T |
1390820 |
gccaaacaaacaaccccatcggcaacttgaacaaaggtgctaatagattgcaacttaatatctgcaccttcaaaatgtgcagtgattataggaaaatcat |
1390721 |
T |
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| Q |
132 |
at |
133 |
Q |
| |
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|| |
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|
| T |
1390720 |
at |
1390719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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