View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17543_low_23 (Length: 285)
Name: NF17543_low_23
Description: NF17543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17543_low_23 |
 | |
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| [»] chr7 (12 HSPs) |
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|
| [»] scaffold0394 (1 HSPs) |
| | |
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| [»] scaffold0254 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 9 - 285
Target Start/End: Original strand, 31439336 - 31439608
Alignment:
| Q |
9 |
gaagaaaatgatatcgtaaagaagattactatggtgagtttatggtgcattcaaaagaatccatcagagagaccatcaatgagtaaagtaatagaaatgc |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31439336 |
gaagaaaatgatatcgtaaagaagattactatggtgagtttatggtgcattcaaacaaatccatcagagagaccatcaatgagtaaagtaatagaaatgc |
31439435 |
T |
|
| Q |
109 |
tacaaggaccacttcattcaatacggtatcctccaaagcccgtcttattttctccagaaaggttttctttacaaatgttagatacgtcttctagtaatct |
208 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31439436 |
tacaaggaccacttcattcaataccgtatcctccaaagcccgtcttattttctccagaaaggttttctttacaaatgttagatacgtcttctagtaatct |
31439535 |
T |
|
| Q |
209 |
ttatgactcaaattcaattataatatatagagaaagaataaaatatgttcaacaaaatcgaaaatgttacgcaattg |
285 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31439536 |
ttatgactcaaattcaattata----atagagaaagaataaaatatgttcaacaaaatcgaaaatgttacgcaattg |
31439608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 9 - 163
Target Start/End: Complemental strand, 31532305 - 31532151
Alignment:
| Q |
9 |
gaagaaaatgatatcgtaaagaagattactatggtgagtttatggtgcattcaaaagaatccatcagagagaccatcaatgagtaaagtaatagaaatgc |
108 |
Q |
| |
|
|||||||||||||| || | |||||||||||||||||||||||||||||||||| || ||||| || |||||||||||||||||||||| |||||||| |
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|
| T |
31532305 |
gaagaaaatgatatggtgagaaagattactatggtgagtttatggtgcattcaaacaaacccatccgatagaccatcaatgagtaaagtaacagaaatgc |
31532206 |
T |
|
| Q |
109 |
tacaaggaccacttcattcaatacggtatcctccaaagcccgtcttattttctcc |
163 |
Q |
| |
|
|||||||||||||||| ||| | | |||||||||||||| |||||| |||||| |
|
|
| T |
31532205 |
tacaaggaccacttcagtcagtgccatatcctccaaagcctttcttatattctcc |
31532151 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 163
Target Start/End: Complemental strand, 31540931 - 31540777
Alignment:
| Q |
9 |
gaagaaaatgatatcgtaaagaagattactatggtgagtttatggtgcattcaaaagaatccatcagagagaccatcaatgagtaaagtaatagaaatgc |
108 |
Q |
| |
|
|||||||||||||| |||| | |||||||||||||||| ||||||||||||||| |||||| | || ||||||||||||||||||||| ||||||||| |
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|
| T |
31540931 |
gaagaaaatgatatggtaagaatgattactatggtgagtctatggtgcattcaaacaaatccagccgatagaccatcaatgagtaaagtattagaaatgc |
31540832 |
T |
|
| Q |
109 |
tacaaggaccacttcattcaatacggtatcctccaaagcccgtcttattttctcc |
163 |
Q |
| |
|
|||||||||||||||| || | | |||||||||||||| |||||| |||||| |
|
|
| T |
31540831 |
tacaaggaccacttcagtcggtgccatatcctccaaagcctttcttatattctcc |
31540777 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 9 - 170
Target Start/End: Complemental strand, 31608166 - 31608005
Alignment:
| Q |
9 |
gaagaaaatgatatcgtaaagaagattactatggtgagtttatggtgcattcaaaagaatccatcagagagaccatcaatgagtaaagtaatagaaatgc |
108 |
Q |
| |
|
|||||||||||||| || | |||||||||||||||||| ||||||||||||||| |||||||||||| |||||| |||||| |||||||||||||||| |
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|
| T |
31608166 |
gaagaaaatgatatggttagaaagattactatggtgagtctatggtgcattcaaacgaatccatcagatagaccaccaatgaataaagtaatagaaatgt |
31608067 |
T |
|
| Q |
109 |
tacaaggaccact-tcattcaatacggtatcctccaaagcccgtcttattttctccagaaagg |
170 |
Q |
| |
|
| |||||||| || ||| ||| | |||||||||||||| |||||||||||||| |||||| |
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|
| T |
31608066 |
tgcaaggaccgctgtca-tcagtgtcatatcctccaaagccggtcttattttctccggaaagg |
31608005 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 162
Target Start/End: Complemental strand, 31585316 - 31585163
Alignment:
| Q |
9 |
gaagaaaatgatatcgtaaagaagattactatggtgagtttatggtgcattcaaaagaatccatcagagagaccatcaatgagtaaagtaatagaaatgc |
108 |
Q |
| |
|
||||||||||| || || | |||||||||||||| ||| ||||||||||||||| ||||||||| || |||||| | |||| |||||||||||||||| |
|
|
| T |
31585316 |
gaagaaaatgacatggttagaaagattactatggtaagtctatggtgcattcaaacgaatccatcggacagaccaccgatgaataaagtaatagaaatgt |
31585217 |
T |
|
| Q |
109 |
tacaaggaccacttcattcaatacggtatcctccaaagcccgtcttattttctc |
162 |
Q |
| |
|
| |||||||||||| ||| | | |||||||||||||||||||||||||||| |
|
|
| T |
31585216 |
tgcaaggaccactttcatcagtgccatatcctccaaagcccgtcttattttctc |
31585163 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 33305465 - 33305578
Alignment:
| Q |
9 |
gaagaaaatgatatcgtaaagaagattactatggtgagtttatggtgcattcaaaagaatccatcagagagaccatcaatgagtaaagtaatagaaatgc |
108 |
Q |
| |
|
|||||||||||||| | || |||||||||||| | ||| | ||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
33305465 |
gaagaaaatgatatggcaagaaagattactatgattagtctttggtgcattcaaacgaatccatcagatagaccatcaatgagtaaagtgatagaaatgc |
33305564 |
T |
|
| Q |
109 |
tacaaggaccactt |
122 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
33305565 |
ttcaaggaccactt |
33305578 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 31594966 - 31594857
Alignment:
| Q |
9 |
gaagaaaatgatatcgtaaagaagattactatggtgagtttatggtgcattcaaaagaatccatcagagagaccatcaatgagtaaagtaatagaaatgc |
108 |
Q |
| |
|
|||||||||||||| || || ||||||||||||||||| ||||||||||||||| ||||||| ||| |||||| |||||| ||||||||| ||||||| |
|
|
| T |
31594966 |
gaagaaaatgatatggttaaaaagattactatggtgagcctatggtgcattcaaacaaatccattagatagaccaccaatgaataaagtaattgaaatgc |
31594867 |
T |
|
| Q |
109 |
tacaaggacc |
118 |
Q |
| |
|
|||||||||| |
|
|
| T |
31594866 |
tacaaggacc |
31594857 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 148
Target Start/End: Original strand, 31573153 - 31573292
Alignment:
| Q |
9 |
gaagaaaatgatatcgtaaagaagattactatggtgagtttatggtgcattcaaaagaatccatcagagagaccatcaatgagtaaagtaatagaaatgc |
108 |
Q |
| |
|
||||||| |||||| |||| ||| | |||||||| ||| ||||||||||||||| ||| |||| ||| |||||||| |||||||||||| ||||||||| |
|
|
| T |
31573153 |
gaagaaactgatatggtaagaaagttaactatggttagtctatggtgcattcaaacgaacccattagatagaccatcgatgagtaaagtattagaaatgc |
31573252 |
T |
|
| Q |
109 |
tacaaggaccacttcattcaatacggtatcctccaaagcc |
148 |
Q |
| |
|
|||||||||||||| ||||| | | || ||||||||||| |
|
|
| T |
31573253 |
tacaaggaccacttgattcagtgccataccctccaaagcc |
31573292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 170
Target Start/End: Complemental strand, 31604575 - 31604414
Alignment:
| Q |
9 |
gaagaaaatgatatcgtaaagaagattactatggtgagtttatggtgcattcaaaagaatccatcagagagaccatcaatgagtaaagtaatagaaatgc |
108 |
Q |
| |
|
|||||||||||||| || | ||||||||| |||||||| | ||| ||||||||| || | |||||| |||||| | |||| |||||||||||||||| |
|
|
| T |
31604575 |
gaagaaaatgatatggtcagaaagattactttggtgagtctgtggcgcattcaaactaaactatcagatagaccaccgatgaataaagtaatagaaatgt |
31604476 |
T |
|
| Q |
109 |
tacaaggaccacttcattcaatacggtatcctccaaagcccgtcttattttctccagaaagg |
170 |
Q |
| |
|
| |||||||||||| ||||| |||||||||||||||||||||| ||| || |||||| |
|
|
| T |
31604475 |
tgcaaggaccactttcaacaatatcatatcctccaaagcccgtcttatattcacctgaaagg |
31604414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 31618179 - 31618066
Alignment:
| Q |
9 |
gaagaaaatgatatcgtaaagaagattactatggtgagtttatggtgcattcaaaagaatccatcagagagaccatcaatgagtaaagtaatagaaatgc |
108 |
Q |
| |
|
|||||||||||||| | | ||||||||| |||||||| ||||||||||||||| || |||||||| |||||| | |||| |||||||||||||||| |
|
|
| T |
31618179 |
gaagaaaatgatatgatcagaaagattactttggtgagtctatggtgcattcaaactaaaccatcagatagaccaccgatgaataaagtaatagaaatgt |
31618080 |
T |
|
| Q |
109 |
tacaaggaccactt |
122 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
31618079 |
tgcaaggaccactt |
31618066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 170
Target Start/End: Complemental strand, 31575906 - 31575745
Alignment:
| Q |
9 |
gaagaaaatgatatcgtaaagaagattactatggtgagtttatggtgcattcaaaagaatccatcagagagaccatcaatgagtaaagtaatagaaatgc |
108 |
Q |
| |
|
|||||||||||||| || | ||||||||| |||||||| ||||||| ||||||| || |||| ||| || ||| | |||| |||||||||||||||| |
|
|
| T |
31575906 |
gaagaaaatgatatggttagaaagattactttggtgagtctatggtgtattcaaaccaaaccattagacaggccaccgatgaataaagtaatagaaatgt |
31575807 |
T |
|
| Q |
109 |
tacaaggaccacttcattcaatacggtatcctccaaagcccgtcttattttctccagaaagg |
170 |
Q |
| |
|
| |||||||||||| || | |||||||||||||| |||||||||||||| |||||| |
|
|
| T |
31575806 |
tgcaaggaccactttcctcggtgtcatatcctccaaagcctgtcttattttctcctgaaagg |
31575745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 31614450 - 31614337
Alignment:
| Q |
9 |
gaagaaaatgatatcgtaaagaagattactatggtgagtttatggtgcattcaaaagaatccatcagagagaccatcaatgagtaaagtaatagaaatgc |
108 |
Q |
| |
|
|||||||||||||| | | ||||| ||| |||||||| | ||||||||||||| || |||| ||| |||||| | |||| |||||||||||||||| |
|
|
| T |
31614450 |
gaagaaaatgatatgattagaaagatcactttggtgagtgtttggtgcattcaaactaaaccattagacagaccaccgatgaataaagtaatagaaatgt |
31614351 |
T |
|
| Q |
109 |
tacaaggaccactt |
122 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
31614350 |
tgcaaggaccactt |
31614337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0394 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0394
Description:
Target: scaffold0394; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 9 - 164
Target Start/End: Complemental strand, 1851 - 1696
Alignment:
| Q |
9 |
gaagaaaatgatatcgtaaagaagattactatggtgagtttatggtgcattcaaaagaatccatcagagagaccatcaatgagtaaagtaatagaaatgc |
108 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||| ||||| ||||||| |||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
1851 |
gaagaaaatgatatgctaaagaagattactatggtgggtttgtggtgtattcaaacgaatccatcagatagtccatcaatgagtaaagtaatagaaatgc |
1752 |
T |
|
| Q |
109 |
tacaaggaccacttcattcaatacggtatcctccaaagcccgtcttattttctcca |
164 |
Q |
| |
|
| ||||| |||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
1751 |
tgcaagggccacttcattcaatacaatatcctccaaagcctatcttattttctcca |
1696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 9 - 164
Target Start/End: Original strand, 15063683 - 15063838
Alignment:
| Q |
9 |
gaagaaaatgatatcgtaaagaagattactatggtgagtttatggtgcattcaaaagaatccatcagagagaccatcaatgagtaaagtaatagaaatgc |
108 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||| ||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
15063683 |
gaagaaaatgatatgctaaagaagattactatggtggctttgtggtgtattcaaacgaatccatcagacagaccatcaatgagtaaagtaatagaaatgc |
15063782 |
T |
|
| Q |
109 |
tacaaggaccacttcattcaatacggtatcctccaaagcccgtcttattttctcca |
164 |
Q |
| |
|
| ||||| |||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
15063783 |
tgcaagggccacttcattcaatacaatatcctccaaagcctatcttattttctcca |
15063838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0254 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0254
Description:
Target: scaffold0254; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 81 - 164
Target Start/End: Complemental strand, 1833 - 1750
Alignment:
| Q |
81 |
ccatcaatgagtaaagtaatagaaatgctacaaggaccacttcattcaatacggtatcctccaaagcccgtcttattttctcca |
164 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
1833 |
ccatcaatgagtaaagtaatagaaatgctgcaagggccacttcattcaatacaatatcctccaaagcctatcttattttctcca |
1750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 156
Target Start/End: Original strand, 52174630 - 52174777
Alignment:
| Q |
9 |
gaagaaaatgatatcgtaaagaagattactatggtgagtttatggtgcattcaaaagaatccatcagagagaccatcaatgagtaaagtaatagaaatgc |
108 |
Q |
| |
|
|||||||||||||| || | ||||||||| |||||||| ||||||||||||||| ||| ||||| || |||||| |||| |||||||||||||||| |
|
|
| T |
52174630 |
gaagaaaatgatatggttataaagattactttggtgagtctatggtgcattcaaacgaaaccatcggatagaccacagatgaataaagtaatagaaatgt |
52174729 |
T |
|
| Q |
109 |
tacaaggaccacttcattcaatacggtatcctccaaagcccgtcttat |
156 |
Q |
| |
|
| |||| |||||| ||| | | |||||||||||||||||||||| |
|
|
| T |
52174730 |
tggaagggccactttcatcagtgccatatcctccaaagcccgtcttat |
52174777 |
T |
|
Back To:
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