View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17543_low_24 (Length: 281)
Name: NF17543_low_24
Description: NF17543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17543_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 2 - 277
Target Start/End: Original strand, 20146994 - 20147270
Alignment:
| Q |
2 |
aataagaagttgaaa-cgaaaccatataggagagaaaaattgaggcaataattgaacctaaagattgattgaaagttgactgtccaataagggataaata |
100 |
Q |
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| T |
20146994 |
aataagaagttgaaaacgaaatcatataggagagaaaaattgaggcagtaattgaacctaaagattgattgaaagttgatagtccaagaagggataaata |
20147093 |
T |
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| Q |
101 |
tatttgatcttgaatgattattgaacgatgatagttttaaattaatctcaagaaaatggtggtagtggtttgaattgtgaaactttttataagaaaatgg |
200 |
Q |
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| T |
20147094 |
tatttgatcttgactgattgttgaacgatgattgttttaaattaatctcaagaaaatggtggtagtggtttgaacagtgaaactttttataagaaaacga |
20147193 |
T |
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| Q |
201 |
tggatggaggtggcggtagggttgagttttggtggatgaaatggtgcatctgacaactagcatagggaggttactat |
277 |
Q |
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| T |
20147194 |
tggatggaggtggcggtagggttgagttttggtggatgaaatggtgcgtctgacaactagcacagggaagttactat |
20147270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 25100668 - 25100943
Alignment:
| Q |
1 |
gaataagaagttgaaa-cgaaaccatataggagagaaaaattgaggcaataattgaacctaaagattgattgaaagttgactgtccaataagggataaat |
99 |
Q |
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| T |
25100668 |
gaataagaagttgaaaacgaaaccatataggagagaaaaattgaggcagtaattgaacctaaagattgattgaaagttgaaagtccaagaagggataaat |
25100767 |
T |
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| Q |
100 |
atatttgatcttgaatgatta-ttgaacgatgatagttttaaattaatctcaagaaaatggtggtagtggtttgaattgtgaaactttttataagaaaat |
198 |
Q |
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| T |
25100768 |
atatttgatcttgactggtttgttgaacgatgattgttttaaattaatctcaagaaaatggtggtagtggtttgaactgtgaaactttttataagaaaaa |
25100867 |
T |
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| Q |
199 |
ggtggatggaggtggcggtagggttgagttttggtggatgaaatggtgcatctgacaactagcatagggaggttactat |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||| |
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| T |
25100868 |
ggtggatggaggtggcggtagggttgagttttggtggatgaaatggtg---ctgacaactagcataggcaagttactat |
25100943 |
T |
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