View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17543_low_3 (Length: 720)

Name: NF17543_low_3
Description: NF17543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17543_low_3
NF17543_low_3
[»] chr4 (35 HSPs)
chr4 (19-704)||(16298432-16299126)
chr4 (504-569)||(25574125-25574190)
chr4 (514-568)||(10472511-10472565)
chr4 (504-562)||(24686576-24686634)
chr4 (514-568)||(1621889-1621943)
chr4 (514-568)||(11785988-11786042)
chr4 (514-568)||(11798155-11798209)
chr4 (514-568)||(13635723-13635777)
chr4 (514-568)||(26578187-26578241)
chr4 (514-568)||(27865735-27865789)
chr4 (514-568)||(49492510-49492564)
chr4 (514-561)||(38010155-38010202)
chr4 (514-568)||(15051134-15051188)
chr4 (514-568)||(30597713-30597767)
chr4 (514-568)||(36011857-36011911)
chr4 (514-568)||(38244958-38245012)
chr4 (514-568)||(46672453-46672507)
chr4 (504-566)||(50563729-50563790)
chr4 (514-568)||(51921263-51921317)
chr4 (514-568)||(55765495-55765549)
chr4 (516-561)||(30357823-30357868)
chr4 (575-616)||(35160483-35160524)
chr4 (514-566)||(1729615-1729667)
chr4 (527-566)||(4168384-4168423)
chr4 (514-557)||(20861594-20861637)
chr4 (527-566)||(26447412-26447451)
chr4 (527-566)||(36621701-36621740)
chr4 (505-547)||(2848128-2848170)
chr4 (534-568)||(6386539-6386573)
chr4 (527-569)||(29826603-29826645)
chr4 (514-568)||(35291546-35291600)
chr4 (514-568)||(49426055-49426109)
chr4 (527-569)||(50643769-50643811)
chr4 (527-568)||(22181243-22181284)
chr4 (503-576)||(43852611-43852683)
[»] chr1 (35 HSPs)
chr1 (503-704)||(33097408-33097610)
chr1 (503-613)||(44688563-44688673)
chr1 (503-576)||(31529655-31529728)
chr1 (503-574)||(51801725-51801796)
chr1 (504-566)||(37639345-37639407)
chr1 (503-568)||(44260521-44260586)
chr1 (504-566)||(35198181-35198243)
chr1 (514-568)||(34369674-34369728)
chr1 (514-568)||(4097906-4097960)
chr1 (514-568)||(11421608-11421662)
chr1 (514-568)||(19897758-19897812)
chr1 (514-568)||(20434720-20434774)
chr1 (514-568)||(23175520-23175574)
chr1 (514-568)||(25889026-25889080)
chr1 (504-570)||(28323328-28323394)
chr1 (514-568)||(49936935-49936989)
chr1 (514-568)||(50351817-50351871)
chr1 (504-549)||(13590471-13590516)
chr1 (504-568)||(2741040-2741104)
chr1 (504-568)||(51420349-51420412)
chr1 (514-561)||(21256777-21256824)
chr1 (514-568)||(6314129-6314183)
chr1 (514-568)||(24635940-24635994)
chr1 (504-557)||(5077457-5077510)
chr1 (512-557)||(13673903-13673948)
chr1 (512-557)||(20372217-20372262)
chr1 (504-568)||(30788352-30788414)
chr1 (524-568)||(18618859-18618903)
chr1 (527-566)||(18056810-18056849)
chr1 (514-561)||(20507286-20507333)
chr1 (514-561)||(31083376-31083423)
chr1 (514-568)||(28375478-28375532)
chr1 (514-568)||(43452556-43452610)
chr1 (514-568)||(48762329-48762383)
chr1 (65-126)||(21499664-21499725)
[»] chr2 (19 HSPs)
chr2 (503-704)||(39548045-39548247)
chr2 (504-568)||(5098720-5098784)
chr2 (503-577)||(16142064-16142138)
chr2 (504-568)||(25995290-25995354)
chr2 (504-571)||(36636932-36636999)
chr2 (505-560)||(40853685-40853740)
chr2 (503-569)||(13081857-13081923)
chr2 (504-566)||(4281788-4281850)
chr2 (514-568)||(7487252-7487306)
chr2 (514-568)||(8149845-8149899)
chr2 (514-568)||(8154469-8154523)
chr2 (514-568)||(34464725-34464779)
chr2 (514-562)||(2263587-2263635)
chr2 (162-238)||(22499270-22499346)
chr2 (514-568)||(15016564-15016618)
chr2 (514-568)||(39355049-39355103)
chr2 (505-557)||(24024633-24024685)
chr2 (527-566)||(18298111-18298150)
chr2 (514-568)||(9143599-9143653)
[»] chr5 (19 HSPs)
chr5 (19-364)||(10190009-10190359)
chr5 (504-566)||(16668794-16668856)
chr5 (504-568)||(33868159-33868223)
chr5 (505-565)||(4674965-4675025)
chr5 (504-568)||(16552637-16552701)
chr5 (504-566)||(18465556-18465618)
chr5 (514-568)||(26637835-26637889)
chr5 (514-568)||(13552997-13553051)
chr5 (514-568)||(14940354-14940408)
chr5 (514-568)||(15416678-15416732)
chr5 (514-568)||(30783449-30783503)
chr5 (514-568)||(37456694-37456748)
chr5 (505-557)||(7183142-7183194)
chr5 (527-566)||(13362796-13362835)
chr5 (531-566)||(23335707-23335742)
chr5 (527-566)||(25017217-25017256)
chr5 (514-568)||(3884033-3884087)
chr5 (514-568)||(14394482-14394536)
chr5 (504-557)||(39056461-39056514)
[»] chr8 (30 HSPs)
chr8 (512-704)||(30651961-30652154)
chr8 (503-613)||(13526624-13526734)
chr8 (503-613)||(13616159-13616269)
chr8 (503-576)||(28698570-28698644)
chr8 (503-563)||(40247288-40247348)
chr8 (504-576)||(2522871-2522943)
chr8 (503-554)||(10443582-10443633)
chr8 (514-568)||(19784285-19784339)
chr8 (504-576)||(12355426-12355498)
chr8 (514-568)||(30413928-30413982)
chr8 (514-568)||(41451119-41451173)
chr8 (514-561)||(9852284-9852331)
chr8 (514-561)||(23396491-23396538)
chr8 (514-561)||(34648133-34648180)
chr8 (514-568)||(10237368-10237422)
chr8 (504-566)||(15181794-15181856)
chr8 (514-556)||(40023272-40023314)
chr8 (514-568)||(41099196-41099250)
chr8 (514-568)||(43690654-43690708)
chr8 (526-566)||(8550529-8550569)
chr8 (524-568)||(34633319-34633363)
chr8 (527-566)||(7614094-7614133)
chr8 (527-566)||(32987445-32987484)
chr8 (514-568)||(7857694-7857748)
chr8 (514-568)||(15227044-15227098)
chr8 (525-563)||(15260854-15260892)
chr8 (527-569)||(42433727-42433769)
chr8 (529-566)||(4836701-4836738)
chr8 (529-566)||(4842146-4842183)
chr8 (575-620)||(9677741-9677786)
[»] chr6 (13 HSPs)
chr6 (507-623)||(16967966-16968082)
chr6 (503-613)||(4338573-4338683)
chr6 (514-568)||(1449556-1449610)
chr6 (504-566)||(18611192-18611254)
chr6 (514-568)||(31216676-31216730)
chr6 (514-568)||(34870084-34870138)
chr6 (514-561)||(30908666-30908713)
chr6 (514-568)||(1536894-1536948)
chr6 (514-568)||(6900817-6900871)
chr6 (504-554)||(32556348-32556398)
chr6 (527-566)||(35119261-35119300)
chr6 (514-568)||(7089096-7089150)
chr6 (514-568)||(15493188-15493242)
[»] chr7 (23 HSPs)
chr7 (503-576)||(34875492-34875565)
chr7 (504-566)||(5757390-5757452)
chr7 (507-569)||(39007646-39007708)
chr7 (504-568)||(44141249-44141313)
chr7 (514-568)||(763711-763765)
chr7 (514-568)||(16933242-16933296)
chr7 (514-568)||(16938625-16938679)
chr7 (504-557)||(6797394-6797447)
chr7 (527-566)||(30428899-30428938)
chr7 (504-563)||(46346719-46346778)
chr7 (514-568)||(11732645-11732699)
chr7 (514-568)||(20000672-20000726)
chr7 (514-568)||(30884220-30884274)
chr7 (514-568)||(31660083-31660137)
chr7 (514-568)||(41911107-41911161)
chr7 (514-568)||(46358534-46358588)
chr7 (514-561)||(24359885-24359932)
chr7 (527-566)||(28396748-28396787)
chr7 (527-566)||(46024053-46024092)
chr7 (504-566)||(27335629-27335690)
chr7 (527-568)||(15974934-15974975)
chr7 (515-568)||(35736963-35737016)
chr7 (504-549)||(45402887-45402932)
[»] chr3 (31 HSPs)
chr3 (503-576)||(53594971-53595044)
chr3 (504-568)||(47728392-47728456)
chr3 (504-568)||(51682000-51682064)
chr3 (504-568)||(26662536-26662600)
chr3 (504-559)||(23755289-23755344)
chr3 (504-557)||(32232995-32233048)
chr3 (503-568)||(37319458-37319523)
chr3 (504-563)||(23699331-23699390)
chr3 (504-563)||(23717786-23717845)
chr3 (504-563)||(23736242-23736301)
chr3 (514-561)||(34563352-34563399)
chr3 (575-622)||(46478254-46478301)
chr3 (514-561)||(51846785-51846832)
chr3 (514-568)||(9595978-9596032)
chr3 (514-568)||(33414011-33414065)
chr3 (514-568)||(3475405-3475459)
chr3 (514-568)||(9106281-9106335)
chr3 (514-568)||(19284685-19284739)
chr3 (512-566)||(28299952-28300006)
chr3 (524-566)||(39099220-39099262)
chr3 (503-569)||(39195105-39195171)
chr3 (514-568)||(46237756-46237810)
chr3 (514-568)||(47335046-47335100)
chr3 (527-568)||(19385313-19385354)
chr3 (527-568)||(51362436-51362477)
chr3 (514-561)||(41192355-41192402)
chr3 (527-566)||(50754032-50754071)
chr3 (527-566)||(52987650-52987689)
chr3 (514-568)||(2941924-2941978)
chr3 (514-568)||(30947909-30947963)
chr3 (514-568)||(54379177-54379231)
[»] scaffold0571 (1 HSPs)
scaffold0571 (514-568)||(674-728)
[»] scaffold0045 (1 HSPs)
scaffold0045 (514-568)||(33698-33752)
[»] scaffold0581 (1 HSPs)
scaffold0581 (514-568)||(8419-8473)
[»] scaffold0460 (1 HSPs)
scaffold0460 (512-557)||(1616-1661)
[»] scaffold0006 (2 HSPs)
scaffold0006 (504-557)||(209330-209383)
scaffold0006 (512-557)||(171517-171562)
[»] scaffold0238 (1 HSPs)
scaffold0238 (527-568)||(25230-25271)
[»] scaffold0069 (1 HSPs)
scaffold0069 (512-557)||(51371-51416)
[»] scaffold0074 (1 HSPs)
scaffold0074 (514-561)||(24288-24335)
[»] scaffold0002 (1 HSPs)
scaffold0002 (504-554)||(450206-450256)
[»] scaffold0012 (1 HSPs)
scaffold0012 (504-557)||(119206-119259)


Alignment Details
Target: chr4 (Bit Score: 506; Significance: 0; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 19 - 704
Target Start/End: Original strand, 16298432 - 16299126
Alignment:
Q  19 agtgatagtgtagaatagttaataatgataaggatataatcgctagaataataatgagtctaagatagaagtagatagcagagtataaaactaagatgaa 118  Q
    ||||||||||||||||| |||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  16298432 agtgatagtgtagaataattaataatgataa--atataatccctagaataataatgagtctaagatagaagtagatagaagagtataaaactaagatgaa 16298529  T
Q  119 caattaaaaatggtaaagatatttatgataaaagatgttatgagaagagataagacaaatgtaattggaagtaggaacatgtaagttaaagtaaagaata 218  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||| | |    
T  16298530 taattaaaaatggtaaagatatttatgataaaagatgttatgagaagagataagacgaatgtaattggaagtaggaagatgttagttaaagtaaaggaaa 16298629  T
Q  219 atgttagaaatgatgataatagcgagataaagactttatgttaaaaagataggataattcctaggtgagggaaatatatctaagtgttttccttatagta 318  Q
    |||||||||||||||||||||| ||||||||||||||| | |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  16298630 atgttagaaatgatgataatagtgagataaagactttaagctaaaaagatagggtaattcctaggtgagggagatatatctaagtgttttccttatagta 16298729  T
Q  319 atttcgtatggagatggtgggcttaagatgagaattaactaaaggaataaaagacgattatgtataaaagac----aat------ataatatataatttt 408  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||    |||      |||||||||||||||    
T  16298730 atttcgtatagagatggtgcgcttaagatgagaattaactaaaggaatgaaatacgattatgtataaaagacataaaatgtttgaataatatataatttt 16298829  T
Q  409 tgggggtcaaaactgttattaagttattttattattagaagacattgtttgccgataaaaagatataattatagttgaagagtatttgacatgccaaagt 508  Q
     | ||||||||||||||||||||  |||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  16298830 agagggtcaaaactgttattaagccattttattattagaagactttgtttgccggtaaaaagatataattttagttgaagagtatttgacatgccaaagt 16298929  T
Q  509 tactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagatttgttcgcacatctcttctccaaagaatcagacaaaaacatc 608  Q
    || |||||||||| |||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  16298930 tattatgcataagtcatttccttatgcaccctgcataatcacttcacaaccatcagatttgatcgcacatctcttctccaaagaatcagacaacaacatc 16299029  T
Q  609 gtgttttcaccactcaccgagccaccatgtgacatcagatcggtcacgagaaagaggtggtcaccgg-atgaatgaatctccggcggcataagggat 704  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||    
T  16299030 gtgttttcaccactcaccgagccaccatgtgacatcagatcggtcacgagaaagaggtggtcaccggcatgaacgaatctccggcggcgtaagggat 16299126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 504 - 569
Target Start/End: Complemental strand, 25574190 - 25574125
Alignment:
Q  504 aaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagatttg 569  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  25574190 aaagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaaccatcagatttg 25574125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 10472511 - 10472565
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  10472511 tgcataagtcatttccttatgcaccgtgcataaacatttcacaaccatcagattt 10472565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 504 - 562
Target Start/End: Original strand, 24686576 - 24686634
Alignment:
Q  504 aaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatc 562  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  24686576 aaagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaaccatc 24686634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 1621889 - 1621943
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||||||||||||||||||| ||||||||||  |||||||||||||||||    
T  1621889 tgcataagccatttccttatgcaccgtgcataaacacatcacaaccatcagattt 1621943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 11785988 - 11786042
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||| ||||||||||||||||| ||||||||||  |||||||||||||||||    
T  11785988 tgcataaaccatttccttatgcaccgtgcataaacacatcacaaccatcagattt 11786042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 11798155 - 11798209
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||| ||||||||||||||||| ||||||||||  |||||||||||||||||    
T  11798155 tgcataaaccatttccttatgcaccgtgcataaacacatcacaaccatcagattt 11798209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 514 - 568
Target Start/End: Complemental strand, 13635777 - 13635723
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    |||||||| |||||||||||||||| ||||||||||  |||||||||||||||||    
T  13635777 tgcataagtcatttccttatgcaccgtgcataaacacatcacaaccatcagattt 13635723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 514 - 568
Target Start/End: Complemental strand, 26578241 - 26578187
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||||||||| ||||||| | |||||||||| ||||||||||||||||||    
T  26578241 tgcataagccatttctttatgcatcgtgcataaacacttcacaaccatcagattt 26578187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 514 - 568
Target Start/End: Complemental strand, 27865789 - 27865735
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    |||||||||||||||| |||||||| ||||||||||  |||||||||||||||||    
T  27865789 tgcataagccatttccatatgcaccgtgcataaacacatcacaaccatcagattt 27865735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 514 - 568
Target Start/End: Complemental strand, 49492564 - 49492510
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    |||||||| |||||||||||||||| ||||||||||  |||||||||||||||||    
T  49492564 tgcataagtcatttccttatgcaccgtgcataaacacatcacaaccatcagattt 49492510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 514 - 561
Target Start/End: Original strand, 38010155 - 38010202
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccat 561  Q
    |||||||| |||||||||||||||| |||||||||| |||||||||||    
T  38010155 tgcataagtcatttccttatgcaccatgcataaacacttcacaaccat 38010202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 514 - 568
Target Start/End: Complemental strand, 15051188 - 15051134
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||  ||||||||||||||| ||||||||||  |||||||||||||||||    
T  15051188 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 15051134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 30597713 - 30597767
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||  ||||||||||||||| ||||||||||  |||||||||||||||||    
T  30597713 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 30597767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 36011857 - 36011911
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||  ||||||||||||||| ||||||||||  |||||||||||||||||    
T  36011857 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 36011911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 38244958 - 38245012
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    |||||||||||||||||| |||||  | |||||||| ||||||||||||||||||    
T  38244958 tgcataagccatttccttctgcacagttcataaacacttcacaaccatcagattt 38245012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 46672453 - 46672507
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||  ||||||||||||||| ||||||||||  |||||||||||||||||    
T  46672453 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 46672507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 504 - 566
Target Start/End: Complemental strand, 50563790 - 50563729
Alignment:
Q  504 aaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagat 566  Q
    ||||||| ||||||||||  ||||| | |||||||||||||||||| ||||||||||||||||    
T  50563790 aaagttattatgcataagatatttcat-atgcaccctgcataaacacttcacaaccatcagat 50563729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 514 - 568
Target Start/End: Complemental strand, 51921317 - 51921263
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||  ||||||||||||||| ||||||||||  |||||||||||||||||    
T  51921317 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 51921263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 55765495 - 55765549
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    |||||||| |||||||||||||||| ||||||||||  | |||||||||||||||    
T  55765495 tgcataagtcatttccttatgcaccgtgcataaacacattacaaccatcagattt 55765549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 516 - 561
Target Start/End: Original strand, 30357823 - 30357868
Alignment:
Q  516 cataagccatttccttatgcaccctgcataaacatttcacaaccat 561  Q
    |||||| |||||||||||||||| |||||||||| |||||||||||    
T  30357823 cataagtcatttccttatgcaccgtgcataaacacttcacaaccat 30357868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 575 - 616
Target Start/End: Original strand, 35160483 - 35160524
Alignment:
Q  575 acatctcttctccaaagaatcagacaaaaacatcgtgttttc 616  Q
    |||||||||||||||||||||||| || ||||||||||||||    
T  35160483 acatctcttctccaaagaatcagaaaagaacatcgtgttttc 35160524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 514 - 566
Target Start/End: Complemental strand, 1729667 - 1729615
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagat 566  Q
    |||||||| |||||| |||| |||| |||||||||| ||||||||||||||||    
T  1729667 tgcataagtcatttctttatacaccgtgcataaacacttcacaaccatcagat 1729615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 527 - 566
Target Start/End: Original strand, 4168384 - 4168423
Alignment:
Q  527 tccttatgcaccctgcataaacatttcacaaccatcagat 566  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  4168384 tccttatgcaccgtgcataaacacttcacaaccatcagat 4168423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 514 - 557
Target Start/End: Original strand, 20861594 - 20861637
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaa 557  Q
    |||||||||||||||||||||| || |||||||||| |||||||    
T  20861594 tgcataagccatttccttatgcgccgtgcataaacacttcacaa 20861637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 26447451 - 26447412
Alignment:
Q  527 tccttatgcaccctgcataaacatttcacaaccatcagat 566  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  26447451 tccttatgcaccgtgcataaacacttcacaaccatcagat 26447412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 36621740 - 36621701
Alignment:
Q  527 tccttatgcaccctgcataaacatttcacaaccatcagat 566  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  36621740 tccttatgcaccgtgcataaacacttcacaaccatcagat 36621701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 505 - 547
Target Start/End: Complemental strand, 2848170 - 2848128
Alignment:
Q  505 aagttactatgcataagccatttccttatgcaccctgcataaa 547  Q
    |||||| |||||||||| || ||||||||||||||||||||||    
T  2848170 aagttattatgcataagtcagttccttatgcaccctgcataaa 2848128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 534 - 568
Target Start/End: Complemental strand, 6386573 - 6386539
Alignment:
Q  534 gcaccctgcataaacatttcacaaccatcagattt 568  Q
    |||||||||||||||| ||||||||||||||||||    
T  6386573 gcaccctgcataaacacttcacaaccatcagattt 6386539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 527 - 569
Target Start/End: Complemental strand, 29826645 - 29826603
Alignment:
Q  527 tccttatgcaccctgcataaacatttcacaaccatcagatttg 569  Q
    |||||||||||| ||||||| || |||||||||||||||||||    
T  29826645 tccttatgcaccgtgcataagcacttcacaaccatcagatttg 29826603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 514 - 568
Target Start/End: Complemental strand, 35291600 - 35291546
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||  ||||||||||||||| ||||||||||  |||||||||| ||||||    
T  35291600 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccataagattt 35291546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 514 - 568
Target Start/End: Complemental strand, 49426109 - 49426055
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||  ||||||||||||||| ||||||||||  |||||||||||| ||||    
T  49426109 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcaaattt 49426055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 527 - 569
Target Start/End: Original strand, 50643769 - 50643811
Alignment:
Q  527 tccttatgcaccctgcataaacatttcacaaccatcagatttg 569  Q
    |||||||||||| |||||||||| |||| ||||||||||||||    
T  50643769 tccttatgcaccgtgcataaacacttcataaccatcagatttg 50643811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 568
Target Start/End: Complemental strand, 22181284 - 22181243
Alignment:
Q  527 tccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    |||||||||||| |||||||| | ||||||||||||||||||    
T  22181284 tccttatgcaccgtgcataaaaacttcacaaccatcagattt 22181243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 503 - 576
Target Start/End: Complemental strand, 43852683 - 43852611
Alignment:
Q  503 caaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagatttgttcgcac 576  Q
    |||||||| |||||||||| ||||| |||||||||  |||||||| | |||| || ||||||||||| ||||||    
T  43852683 caaagttattatgcataagtcattttcttatgcaca-tgcataaatacttcataatcatcagatttgatcgcac 43852611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 151; Significance: 2e-79; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 503 - 704
Target Start/End: Original strand, 33097408 - 33097610
Alignment:
Q  503 caaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagatttgttcgcacatctcttctccaaagaatcagacaaa 602  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||   |||||||||||||||||||||||||||||     
T  33097408 caaagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaaccatcagatttgaatgcacatctcttctccaaagaatcagacaac 33097507  T
Q  603 aacatcgtgttttcaccactcaccgagccaccatgtgacatcagatcggtcacgagaaagaggtggtcaccgg-atgaatgaatctccggcggcataagg 701  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||| ||||| |||||    
T  33097508 aacatcgtgttttcaccactcaccgagccaccatgtgacatcagatcggtcacgagaaagaggtggtcgccggcatgaacgaatctccagcggcgtaagg 33097607  T
Q  702 gat 704  Q
    |||    
T  33097608 gat 33097610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 503 - 613
Target Start/End: Complemental strand, 44688673 - 44688563
Alignment:
Q  503 caaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagatttgttcgcacatctcttctccaaagaatcagacaaa 602  Q
    ||||||||  ||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||     
T  44688673 caaagttatcatgcataagtcatttccttatgcacgctgcataaacacttcacaaccatcagatttgatcgcatatctcttctccaaagaatcagacaac 44688574  T
Q  603 aacatcgtgtt 613  Q
    |||||| ||||    
T  44688573 aacatcatgtt 44688563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 503 - 576
Target Start/End: Complemental strand, 31529728 - 31529655
Alignment:
Q  503 caaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagatttgttcgcac 576  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||    
T  31529728 caaagttattatgcataagccatttccttatgcaccatgcataaacacttcacaaccatcagatttgatcgcac 31529655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 503 - 574
Target Start/End: Complemental strand, 51801796 - 51801725
Alignment:
Q  503 caaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagatttgttcgc 574  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||| ||||    
T  51801796 caaagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaaccatcagacttgatcgc 51801725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 504 - 566
Target Start/End: Original strand, 37639345 - 37639407
Alignment:
Q  504 aaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagat 566  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  37639345 aaagttattatgcataagacatttccttatgcaccctgcataaacacttcacaaccatcagat 37639407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 503 - 568
Target Start/End: Original strand, 44260521 - 44260586
Alignment:
Q  503 caaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    |||||||| ||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  44260521 caaagttattatgcgtaagtcatttccttatgcaccctgcataaacacttcacaaccatcagattt 44260586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 504 - 566
Target Start/End: Complemental strand, 35198243 - 35198181
Alignment:
Q  504 aaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagat 566  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||| |||||| |||||||||    
T  35198243 aaagttattatgcataagacatttccttatgcaccctgcataaacacttcacagccatcagat 35198181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 34369674 - 34369728
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    |||||||||||||| |||||||||| |||||||||| ||||||||||||||||||    
T  34369674 tgcataagccattttcttatgcaccgtgcataaacacttcacaaccatcagattt 34369728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 514 - 568
Target Start/End: Complemental strand, 4097960 - 4097906
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||| ||||||||||||||| |||||||||| ||||||||||||| ||||    
T  4097960 tgcataagctatttccttatgcaccgtgcataaacacttcacaaccatcaaattt 4097906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 11421608 - 11421662
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    |||||||  |||||||||||||||| |||||||||| ||||||||||||||||||    
T  11421608 tgcataaatcatttccttatgcaccgtgcataaacacttcacaaccatcagattt 11421662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 514 - 568
Target Start/End: Complemental strand, 19897812 - 19897758
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||  ||||||||||||||| ||||||||||| |||||||||||||||||    
T  19897812 tgcataagttatttccttatgcaccgtgcataaacatatcacaaccatcagattt 19897758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 514 - 568
Target Start/End: Complemental strand, 20434774 - 20434720
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||||||||||||||||||| ||||||||||  |||||||||| ||||||    
T  20434774 tgcataagccatttccttatgcaccgtgcataaacacatcacaaccattagattt 20434720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 514 - 568
Target Start/End: Complemental strand, 23175574 - 23175520
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    |||||||||||||||||||||| || |||||||||| ||||||||||||| ||||    
T  23175574 tgcataagccatttccttatgcgccgtgcataaacacttcacaaccatcaaattt 23175520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 514 - 568
Target Start/End: Complemental strand, 25889080 - 25889026
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||| ||||||||||||||| ||||||||||  |||||||||||||||||    
T  25889080 tgcataagctatttccttatgcaccgtgcataaacacatcacaaccatcagattt 25889026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 504 - 570
Target Start/End: Complemental strand, 28323394 - 28323328
Alignment:
Q  504 aaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagatttgt 570  Q
    ||||||| |||||||||| |||||  ||||||||||| |||||||| | ||||||||||||||||||    
T  28323394 aaagttattatgcataagtcatttttttatgcaccctccataaacactacacaaccatcagatttgt 28323328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 514 - 568
Target Start/End: Complemental strand, 49936989 - 49936935
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    |||||||| |||||||||||||||| ||||||||||  |||||||||||||||||    
T  49936989 tgcataagtcatttccttatgcaccgtgcataaacacatcacaaccatcagattt 49936935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 50351817 - 50351871
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    |||||||| |||||||||||||||| ||||||||||  |||||||||||||||||    
T  50351817 tgcataagtcatttccttatgcaccgtgcataaacacatcacaaccatcagattt 50351871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 504 - 549
Target Start/End: Original strand, 13590471 - 13590516
Alignment:
Q  504 aaagttactatgcataagccatttccttatgcaccctgcataaaca 549  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||    
T  13590471 aaagttattatgcataagtcatttccttatgcaccctgcataaaca 13590516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 504 - 568
Target Start/End: Original strand, 2741040 - 2741104
Alignment:
Q  504 aaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||| |||||||||| |||||| ||||| || ||||||||||||||||||| ||| ||||||    
T  2741040 aaagttattatgcataagtcatttctttatgtactctgcataaacatttcacaatcattagattt 2741104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 504 - 568
Target Start/End: Original strand, 51420349 - 51420412
Alignment:
Q  504 aaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||| |||||||||| || ||| ||||||| |||||||||||| ||||||||||||||||||    
T  51420349 aaagttattatgcataagtcaattctttatgcatcctgcataaaca-ttcacaaccatcagattt 51420412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 514 - 561
Target Start/End: Complemental strand, 21256824 - 21256777
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccat 561  Q
    |||||||||||||| |||||||||| |||||||||| |||||||||||    
T  21256824 tgcataagccattttcttatgcaccgtgcataaacacttcacaaccat 21256777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 6314129 - 6314183
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||||||||||||||||||| ||||||||||  ||||| |||||| ||||    
T  6314129 tgcataagccatttccttatgcaccgtgcataaacacatcacagccatcaaattt 6314183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 24635940 - 24635994
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||  ||||||||||||||| ||||||||||  |||||||||||||||||    
T  24635940 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 24635994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 504 - 557
Target Start/End: Complemental strand, 5077510 - 5077457
Alignment:
Q  504 aaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaa 557  Q
    ||||||| |||||||||| ||||||||||||| |||||||||| || |||||||    
T  5077510 aaagttattatgcataagtcatttccttatgcgccctgcataagcacttcacaa 5077457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 512 - 557
Target Start/End: Original strand, 13673903 - 13673948
Alignment:
Q  512 tatgcataagccatttccttatgcaccctgcataaacatttcacaa 557  Q
    |||||||||| ||||||||||||||||||| ||||||| |||||||    
T  13673903 tatgcataagtcatttccttatgcaccctgtataaacacttcacaa 13673948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 512 - 557
Target Start/End: Original strand, 20372217 - 20372262
Alignment:
Q  512 tatgcataagccatttccttatgcaccctgcataaacatttcacaa 557  Q
    |||||||||| ||||| ||||||||||||||||||||| |||||||    
T  20372217 tatgcataagtcattttcttatgcaccctgcataaacacttcacaa 20372262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 504 - 568
Target Start/End: Original strand, 30788352 - 30788414
Alignment:
Q  504 aaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||| |||||||||| ||||||||||||||  ||||||  ||||||||||||||||| ||||    
T  30788352 aaagttattatgcataagtcatttccttatgcagtctgcat--acatttcacaaccatcatattt 30788414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 524 - 568
Target Start/End: Original strand, 18618859 - 18618903
Alignment:
Q  524 atttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||||||||| ||||||||||  |||||||||||||||||    
T  18618859 atttccttatgcaccgtgcataaacacatcacaaccatcagattt 18618903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 527 - 566
Target Start/End: Original strand, 18056810 - 18056849
Alignment:
Q  527 tccttatgcaccctgcataaacatttcacaaccatcagat 566  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  18056810 tccttatgcaccgtgcataaacacttcacaaccatcagat 18056849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 514 - 561
Target Start/End: Complemental strand, 20507333 - 20507286
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccat 561  Q
    |||||||||||||||||||||||   |||||||| |||||||||||||    
T  20507333 tgcataagccatttccttatgcattgtgcataaatatttcacaaccat 20507286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 514 - 561
Target Start/End: Original strand, 31083376 - 31083423
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccat 561  Q
    ||||||||||||||||||||| ||| | |||||||| |||||||||||    
T  31083376 tgcataagccatttccttatgtaccattcataaacacttcacaaccat 31083423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 28375478 - 28375532
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||  ||||| ||||||||| ||||||||||  |||||||||||||||||    
T  28375478 tgcataagttatttctttatgcaccgtgcataaacacatcacaaccatcagattt 28375532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 43452556 - 43452610
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||  ||||||||||||||| ||||||||||  ||||||| |||||||||    
T  43452556 tgcataagttatttccttatgcaccgtgcataaacacatcacaactatcagattt 43452610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 514 - 568
Target Start/End: Complemental strand, 48762383 - 48762329
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||  ||||||||||||||| ||||||||||  |||||||||| ||||||    
T  48762383 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccattagattt 48762329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 126
Target Start/End: Original strand, 21499664 - 21499725
Alignment:
Q  65 aataataatgagtctaagatagaagtagatagcagagtataaaactaagatgaacaattaaa 126  Q
    |||| ||||||||||||||||||||||||||| ||||| ||  || || | |||||||||||    
T  21499664 aatagtaatgagtctaagatagaagtagatagaagagtgtatgaccaaaaggaacaattaaa 21499725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 143; Significance: 9e-75; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 503 - 704
Target Start/End: Original strand, 39548045 - 39548247
Alignment:
Q  503 caaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagatttgttcgcacatctcttctccaaagaatcagacaaa 602  Q
    |||||||| ||| |||||| ||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||     
T  39548045 caaagttattatacataagtcatttccttatgcaccctgcataaacacttcacaaccatcaaatttgatcgcacatctcttctccaaagaatcagacaac 39548144  T
Q  603 aacatcgtgttttcaccactcaccgagccaccatgtgacatcagatcggtcacgagaaagaggtggtcaccgg-atgaatgaatctccggcggcataagg 701  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||| |||||| |||||    
T  39548145 aacatcatgttttcaccactcaccgagccgccatgtgacatcagatcggtcacgagaaagaggtggtcgccggcatgaacgaatctctggcggcgtaagg 39548244  T
Q  702 gat 704  Q
    |||    
T  39548245 gat 39548247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 504 - 568
Target Start/End: Original strand, 5098720 - 5098784
Alignment:
Q  504 aaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||    
T  5098720 aaagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaaccatcaaattt 5098784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 503 - 577
Target Start/End: Complemental strand, 16142138 - 16142064
Alignment:
Q  503 caaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagatttgttcgcaca 577  Q
    |||| ||| |||||| ||||||||||||||||||| ||||||||||| ||||||||||| ||||||| |||||||    
T  16142138 caaatttattatgcacaagccatttccttatgcacgctgcataaacacttcacaaccattagatttgatcgcaca 16142064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 504 - 568
Target Start/End: Original strand, 25995290 - 25995354
Alignment:
Q  504 aaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||| |||||||||| ||||||||||||||| ||||||||| | ||||||||||||||||||    
T  25995290 aaagttattatgcataagacatttccttatgcactctgcataaatacttcacaaccatcagattt 25995354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 504 - 571
Target Start/End: Complemental strand, 36636999 - 36636932
Alignment:
Q  504 aaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagatttgtt 571  Q
    ||||||| |||||||||| ||||| |||||| ||||| |||||||| |||||||||||||||||||||    
T  36636999 aaagttattatgcataagtcattttcttatgtaccctacataaacacttcacaaccatcagatttgtt 36636932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 505 - 560
Target Start/End: Complemental strand, 40853740 - 40853685
Alignment:
Q  505 aagttactatgcataagccatttccttatgcaccctgcataaacatttcacaacca 560  Q
    |||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  40853740 aagttattatgcataagccatttccttatgcatcctgcataaacacttcacaacca 40853685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 503 - 569
Target Start/End: Complemental strand, 13081923 - 13081857
Alignment:
Q  503 caaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagatttg 569  Q
    |||||||| |||||||||| |||||| ||||||||||| |||||||| |||||||||||| ||||||    
T  13081923 caaagttattatgcataagtcatttcattatgcaccctacataaacacttcacaaccatctgatttg 13081857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 504 - 566
Target Start/End: Complemental strand, 4281850 - 4281788
Alignment:
Q  504 aaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagat 566  Q
    ||||||| |||||||||| |||||||||||| || ||| ||||||| ||||||||||||||||    
T  4281850 aaagttattatgcataagacatttccttatgtactctgtataaacacttcacaaccatcagat 4281788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 514 - 568
Target Start/End: Complemental strand, 7487306 - 7487252
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||| ||||||||||||||| ||||||||||  |||||||||||||||||    
T  7487306 tgcataagctatttccttatgcaccgtgcataaacacatcacaaccatcagattt 7487252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 8149845 - 8149899
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||||||||||||||||| | ||||||||||  |||||||||||||||||    
T  8149845 tgcataagccatttccttatgcatcgtgcataaacacatcacaaccatcagattt 8149899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 8154469 - 8154523
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||||||||||||||||| | ||||||||||  |||||||||||||||||    
T  8154469 tgcataagccatttccttatgcatcgtgcataaacacatcacaaccatcagattt 8154523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 34464725 - 34464779
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||  ||||||||||||||| ||||||||||| |||||||||||||||||    
T  34464725 tgcataagttatttccttatgcaccgtgcataaacatatcacaaccatcagattt 34464779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 514 - 562
Target Start/End: Original strand, 2263587 - 2263635
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatc 562  Q
    ||||||||||||||| ||||||||| |||||||||| ||||||||||||    
T  2263587 tgcataagccatttctttatgcaccgtgcataaacacttcacaaccatc 2263635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 238
Target Start/End: Original strand, 22499270 - 22499346
Alignment:
Q  162 gaagagataagacaaatgtaattggaagtaggaacatgtaagttaaagtaaagaataatgttagaaatgatgataat 238  Q
    ||||| |||||||||| |||||||||| ||| ||  ||||||||||||||| | |||||||||||||| || |||||    
T  22499270 gaagaaataagacaaaggtaattggaaatagaaaggtgtaagttaaagtaagggataatgttagaaataataataat 22499346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 514 - 568
Target Start/End: Complemental strand, 15016618 - 15016564
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||  ||||||||||||||| ||||||||||  |||||||||||||||||    
T  15016618 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 15016564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 39355049 - 39355103
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||  ||||||||||||||| ||||||||||  |||||||||||||||||    
T  39355049 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 39355103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 505 - 557
Target Start/End: Complemental strand, 24024685 - 24024633
Alignment:
Q  505 aagttactatgcataagccatttccttatgcaccctgcataaacatttcacaa 557  Q
    |||||| |||||||||| || ||||||||||||| |||||||||| |||||||    
T  24024685 aagttattatgcataagtcaattccttatgcaccatgcataaacacttcacaa 24024633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 18298150 - 18298111
Alignment:
Q  527 tccttatgcaccctgcataaacatttcacaaccatcagat 566  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  18298150 tccttatgcaccgtgcataaacacttcacaaccatcagat 18298111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 9143599 - 9143653
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||  ||||||||||||||| ||||||||||  |||||| ||||||||||    
T  9143599 tgcataagttatttccttatgcaccgtgcataaacacatcacaatcatcagattt 9143653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 141; Significance: 1e-73; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 19 - 364
Target Start/End: Complemental strand, 10190359 - 10190009
Alignment:
Q  19 agtgatagtgtagaatagttaataatgataaggatataatcgctagaataataatgagtctaagatagaagtagatagcagagtataaaactaagatgaa 118  Q
    ||||||||||||||||||||||| ||||||  |||| |||| ||| |||| |||||||||||||||| ||||| |||| |||||||||||||||||||||    
T  10190359 agtgatagtgtagaatagttaatgatgatagagatagaatccctataatagtaatgagtctaagataaaagtatatagaagagtataaaactaagatgaa 10190260  T
Q  119 caattaaaaatggtaaagatatttatgataa---aagatgttatgagaagagataagacaaatgtaattggaagtaggaacatgtaagttaaagtaaaga 215  Q
    ||||||||||||||||||   ||||||||||   |||||| || | |||| |||||||| ||||||||||||||||||||  |||||||||| ||||||     
T  10190259 caattaaaaatggtaaagtggtttatgataaaagaagatgctaggtgaagggataagacgaatgtaattggaagtaggaaggtgtaagttaacgtaaagg 10190160  T
Q  216 ataatgttagaaatgatgataatagcgagataaagactttatgttaaaaagatag-gataattcctaggtgagggaaatatatctaagtgttttcctta- 313  Q
    ||| |||||||||| |||||||| | ||| ||||||||||| |||||||||| || | |||||| |||| |||||| |||||||||||| ||||| |||     
T  10190159 atattgttagaaataatgataatggtgaggtaaagactttaagttaaaaagaaagaggtaattcataggcgagggagatatatctaagttttttctttag 10190060  T
Q  314 tagtaatttcgtatggagatggtgggcttaagatgagaattaactaaagga 364  Q
    |||| |||  |||  | || |||| |||||||| |||||||||||| ||||    
T  10190059 tagttattctgtagagggaaggtgagcttaagaggagaattaactagagga 10190009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 504 - 566
Target Start/End: Complemental strand, 16668856 - 16668794
Alignment:
Q  504 aaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagat 566  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  16668856 aaagttattatgcataagacatttccttatgcaccctgcataaacacttcacaaccatcagat 16668794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 504 - 568
Target Start/End: Original strand, 33868159 - 33868223
Alignment:
Q  504 aaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||    
T  33868159 aaagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaaccatctgattt 33868223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 505 - 565
Target Start/End: Original strand, 4674965 - 4675025
Alignment:
Q  505 aagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcaga 565  Q
    |||||| ||||| |||| ||||||||||||||||||||||||||| |||||||||||||||    
T  4674965 aagttattatgcgtaagtcatttccttatgcaccctgcataaacacttcacaaccatcaga 4675025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 504 - 568
Target Start/End: Complemental strand, 16552701 - 16552637
Alignment:
Q  504 aaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||| |||||||||| |||||||||||||||| |||||||||| ||||||||||||| ||||    
T  16552701 aaagttattatgcataagtcatttccttatgcaccatgcataaacacttcacaaccatcatattt 16552637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 504 - 566
Target Start/End: Complemental strand, 18465618 - 18465556
Alignment:
Q  504 aaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagat 566  Q
    ||||||| |||||||||| |||||| ||||||| |||||||||||| ||||||||||||||||    
T  18465618 aaagttattatgcataagacatttcattatgcatcctgcataaacacttcacaaccatcagat 18465556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 514 - 568
Target Start/End: Complemental strand, 26637889 - 26637835
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    |||||||||||||| |||||||||| ||||||||||  |||||||||||||||||    
T  26637889 tgcataagccattttcttatgcaccgtgcataaacacatcacaaccatcagattt 26637835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 13552997 - 13553051
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||  ||||||||||||||| ||||||||||  |||||||||||||||||    
T  13552997 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 13553051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 514 - 568
Target Start/End: Complemental strand, 14940408 - 14940354
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||  ||||||||||||||| ||||||||||  |||||||||||||||||    
T  14940408 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 14940354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 15416678 - 15416732
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||  ||||||||||||||| ||||||||||  |||||||||||||||||    
T  15416678 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 15416732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 30783449 - 30783503
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    |||||||| |||||||||||||||| ||||||||||  || ||||||||||||||    
T  30783449 tgcataagtcatttccttatgcaccgtgcataaacacatcgcaaccatcagattt 30783503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 37456694 - 37456748
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||| ||||||||||||||||||| | ||||||||  |||||||||||||||||    
T  37456694 tgcatgagccatttccttatgcaccgtacataaacacatcacaaccatcagattt 37456748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 505 - 557
Target Start/End: Original strand, 7183142 - 7183194
Alignment:
Q  505 aagttactatgcataagccatttccttatgcaccctgcataaacatttcacaa 557  Q
    |||||| |||||||||| || |||||||||||| ||||||||||| |||||||    
T  7183142 aagttattatgcataagtcagttccttatgcacactgcataaacacttcacaa 7183194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 527 - 566
Target Start/End: Original strand, 13362796 - 13362835
Alignment:
Q  527 tccttatgcaccctgcataaacatttcacaaccatcagat 566  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  13362796 tccttatgcaccgtgcataaacacttcacaaccatcagat 13362835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 531 - 566
Target Start/End: Complemental strand, 23335742 - 23335707
Alignment:
Q  531 tatgcaccctgcataaacatttcacaaccatcagat 566  Q
    |||||||| |||||||||||||||||||||||||||    
T  23335742 tatgcaccgtgcataaacatttcacaaccatcagat 23335707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 25017256 - 25017217
Alignment:
Q  527 tccttatgcaccctgcataaacatttcacaaccatcagat 566  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  25017256 tccttatgcaccgtgcataaacacttcacaaccatcagat 25017217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 514 - 568
Target Start/End: Complemental strand, 3884087 - 3884033
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    |||||||| |||||||||||||||| ||||||||||  | |||||||||| ||||    
T  3884087 tgcataagtcatttccttatgcaccgtgcataaacacattacaaccatcaaattt 3884033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 14394482 - 14394536
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||  ||||||||||||||| |||||||| |  |||||||||||||||||    
T  14394482 tgcataagttatttccttatgcaccgtgcataaatacatcacaaccatcagattt 14394536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 504 - 557
Target Start/End: Complemental strand, 39056514 - 39056461
Alignment:
Q  504 aaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaa 557  Q
    ||||||| |||||||||  ||||| |||||||||||||| |||||| |||||||    
T  39056514 aaagttattatgcataaatcattttcttatgcaccctgcttaaacacttcacaa 39056461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 138; Significance: 9e-72; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 512 - 704
Target Start/End: Original strand, 30651961 - 30652154
Alignment:
Q  512 tatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagatttgttcgcacatctcttctccaaagaatcagacaaaaacatcgtg 611  Q
    ||||||||| | |||||||||||||||||||||||||| |||||||||| || ||||| ||||||||||||||||||||||||||||||| |||||||||    
T  30651961 tatgcataatctatttccttatgcaccctgcataaacacttcacaaccagcaaatttgatcgcacatctcttctccaaagaatcagacaacaacatcgtg 30652060  T
Q  612 ttttcaccactcaccgagccaccatgtgacatcagatcggtcacgagaaagaggtggtcaccgg-atgaatgaatctccggcggcataagggat 704  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||| ||||| |||||||||||||| ||||||||    
T  30652061 ttttcaccactcaccgagccaccatgtgacatcagatcggtcatgagaaagaggtggtcgtcggcatgaacgaatctccggcggcgtaagggat 30652154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 503 - 613
Target Start/End: Complemental strand, 13526734 - 13526624
Alignment:
Q  503 caaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagatttgttcgcacatctcttctccaaagaatcagacaaa 602  Q
    |||||||| ||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||     
T  13526734 caaagttattatgcataagccatttccttatgtactctgcataaacacttcacaaccatcagatttgatcgcacatctcttctccaaagaatcagacaac 13526635  T
Q  603 aacatcgtgtt 613  Q
    |||||| ||||    
T  13526634 aacatcatgtt 13526624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 503 - 613
Target Start/End: Complemental strand, 13616269 - 13616159
Alignment:
Q  503 caaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagatttgttcgcacatctcttctccaaagaatcagacaaa 602  Q
    |||||||| ||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||     
T  13616269 caaagttattatgcataagccatttccttatgtactctgcataaacacttcacaaccatcagatttgatcgcacatctcttctccaaagaatcagacaac 13616170  T
Q  603 aacatcgtgtt 613  Q
    |||||| ||||    
T  13616169 aacatcatgtt 13616159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 503 - 576
Target Start/End: Complemental strand, 28698644 - 28698570
Alignment:
Q  503 caaagttactatgcataagccatttccttatgcaccctgca-taaacatttcacaaccatcagatttgttcgcac 576  Q
    |||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  28698644 caaagttattatgcataagccattttcttatgcaccctgcattaaacatttcacaaccatcagatttgatcgcac 28698570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 503 - 563
Target Start/End: Complemental strand, 40247348 - 40247288
Alignment:
Q  503 caaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatca 563  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  40247348 caaagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaaccatca 40247288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 504 - 576
Target Start/End: Original strand, 2522871 - 2522943
Alignment:
Q  504 aaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagatttgttcgcac 576  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||| ||||||| ||  ||||||| ||||||    
T  2522871 aaagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaatcaatagatttgatcgcac 2522943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 503 - 554
Target Start/End: Complemental strand, 10443633 - 10443582
Alignment:
Q  503 caaagttactatgcataagccatttccttatgcaccctgcataaacatttca 554  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  10443633 caaagttattatgcataagccatttccttatgcaccctgcataaacacttca 10443582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 19784285 - 19784339
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||||||||||||||||||| ||||||||||  |||||||||||||||||    
T  19784285 tgcataagccatttccttatgcaccgtgcataaacacatcacaaccatcagattt 19784339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 504 - 576
Target Start/End: Original strand, 12355426 - 12355498
Alignment:
Q  504 aaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagatttgttcgcac 576  Q
    ||||||| || ||||||| ||||| ||||||||||||||||||||| ||||||||||| |||| || ||||||    
T  12355426 aaagttattacgcataagtcattttcttatgcaccctgcataaacacttcacaaccattagatctgatcgcac 12355498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 30413928 - 30413982
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    |||||||| |||||||||||||||| ||||||||||  |||||||||||||||||    
T  30413928 tgcataagtcatttccttatgcaccgtgcataaacacatcacaaccatcagattt 30413982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 41451119 - 41451173
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||||||||||||||||||| ||||||||||  |||||| ||||||||||    
T  41451119 tgcataagccatttccttatgcaccgtgcataaacacgtcacaatcatcagattt 41451173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 514 - 561
Target Start/End: Original strand, 9852284 - 9852331
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccat 561  Q
    |||||||| |||||||||||||||| |||||||||| |||||||||||    
T  9852284 tgcataagtcatttccttatgcaccgtgcataaacacttcacaaccat 9852331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 514 - 561
Target Start/End: Original strand, 23396491 - 23396538
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccat 561  Q
    ||||||||||||||||||||||||| |||||||||| || ||||||||    
T  23396491 tgcataagccatttccttatgcaccgtgcataaacactttacaaccat 23396538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 514 - 561
Target Start/End: Complemental strand, 34648180 - 34648133
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccat 561  Q
    |||||||| |||||||||||||||| |||||||||| |||||||||||    
T  34648180 tgcataagtcatttccttatgcaccgtgcataaacacttcacaaccat 34648133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 10237368 - 10237422
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||  ||||||||||||||| ||||||||||  |||||||||||||||||    
T  10237368 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 10237422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 504 - 566
Target Start/End: Original strand, 15181794 - 15181856
Alignment:
Q  504 aaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagat 566  Q
    ||||||| |||||||||    ||||||||||||||||||||||||| ||||||| ||||||||    
T  15181794 aaagttattatgcataatatgtttccttatgcaccctgcataaacacttcacaagcatcagat 15181856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 514 - 556
Target Start/End: Complemental strand, 40023314 - 40023272
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcaca 556  Q
    |||||||||||||||||||| |||| |||||||||||||||||    
T  40023314 tgcataagccatttccttatacaccgtgcataaacatttcaca 40023272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 41099196 - 41099250
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||  ||||||||||||||| ||||||||||  |||||||||||||||||    
T  41099196 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 41099250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 43690654 - 43690708
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||  ||||||||||||||| ||||||||||  |||||||||||||||||    
T  43690654 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 43690708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 526 - 566
Target Start/End: Original strand, 8550529 - 8550569
Alignment:
Q  526 ttccttatgcaccctgcataaacatttcacaaccatcagat 566  Q
    ||||||||||||| |||||||||| ||||||||||||||||    
T  8550529 ttccttatgcaccgtgcataaacacttcacaaccatcagat 8550569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 524 - 568
Target Start/End: Complemental strand, 34633363 - 34633319
Alignment:
Q  524 atttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||||||||| ||||||||||  |||||||||||||||||    
T  34633363 atttccttatgcaccgtgcataaacacatcacaaccatcagattt 34633319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 527 - 566
Target Start/End: Original strand, 7614094 - 7614133
Alignment:
Q  527 tccttatgcaccctgcataaacatttcacaaccatcagat 566  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  7614094 tccttatgcaccatgcataaacacttcacaaccatcagat 7614133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 32987484 - 32987445
Alignment:
Q  527 tccttatgcaccctgcataaacatttcacaaccatcagat 566  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  32987484 tccttatgcaccgtgcataaacacttcacaaccatcagat 32987445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 7857694 - 7857748
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    |||||||||||||| ||||||| || ||||||||||  |||||| ||||||||||    
T  7857694 tgcataagccattttcttatgcgccgtgcataaacacatcacaatcatcagattt 7857748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 15227044 - 15227098
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||  ||||||||||||||| ||||||||||  | |||||||||||||||    
T  15227044 tgcataagttatttccttatgcaccgtgcataaacacattacaaccatcagattt 15227098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 525 - 563
Target Start/End: Complemental strand, 15260892 - 15260854
Alignment:
Q  525 tttccttatgcaccctgcataaacatttcacaaccatca 563  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  15260892 tttccttatgcaccgtgcataaacacttcacaaccatca 15260854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 527 - 569
Target Start/End: Original strand, 42433727 - 42433769
Alignment:
Q  527 tccttatgcaccctgcataaacatttcacaaccatcagatttg 569  Q
    |||||||||||| ||||||| || |||||||||||||||||||    
T  42433727 tccttatgcaccgtgcataagcacttcacaaccatcagatttg 42433769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 529 - 566
Target Start/End: Complemental strand, 4836738 - 4836701
Alignment:
Q  529 cttatgcaccctgcataaacatttcacaaccatcagat 566  Q
    |||||||||| |||||||||| ||||||||||||||||    
T  4836738 cttatgcaccgtgcataaacacttcacaaccatcagat 4836701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 529 - 566
Target Start/End: Complemental strand, 4842183 - 4842146
Alignment:
Q  529 cttatgcaccctgcataaacatttcacaaccatcagat 566  Q
    |||||||||| |||||||||| ||||||||||||||||    
T  4842183 cttatgcaccgtgcataaacacttcacaaccatcagat 4842146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 575 - 620
Target Start/End: Complemental strand, 9677786 - 9677741
Alignment:
Q  575 acatctcttctccaaagaatcagacaaaaacatcgtgttttcacca 620  Q
    |||||||||||| |||||||||||||| ||| |||| |||||||||    
T  9677786 acatctcttctcaaaagaatcagacaacaacgtcgtcttttcacca 9677741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 9e-38; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 507 - 623
Target Start/End: Complemental strand, 16968082 - 16967966
Alignment:
Q  507 gttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagatttgttcgcacatctcttctccaaagaatcagacaaaaaca 606  Q
    |||| |||||||||||||||| ||||||||||||||||||||| |||| |||||||| ||||| |||||||||| |||||||||||||| ||||| ||||    
T  16968082 gttattatgcataagccattttcttatgcaccctgcataaacacttcataaccatcaaatttgatcgcacatctattctccaaagaatcggacaacaaca 16967983  T
Q  607 tcgtgttttcaccactc 623  Q
    |||||||||||||||||    
T  16967982 tcgtgttttcaccactc 16967966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 503 - 613
Target Start/End: Complemental strand, 4338683 - 4338573
Alignment:
Q  503 caaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagatttgttcgcacatctcttctccaaagaatcagacaaa 602  Q
    |||||||  |||||||||||||||| ||||||||||||||||||||| |||| || ||||||||||| ||||||||||||| |||||||||||| || |     
T  4338683 caaagttgttatgcataagccattttcttatgcaccctgcataaacacttcaaaatcatcagatttgatcgcacatctcttttccaaagaatcaaaccac 4338584  T
Q  603 aacatcgtgtt 613  Q
    |||||| ||||    
T  4338583 aacatcatgtt 4338573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 1449556 - 1449610
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||||||||||||||||||| ||||||||||  |||||||||||||||||    
T  1449556 tgcataagccatttccttatgcaccgtgcataaacacatcacaaccatcagattt 1449610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 504 - 566
Target Start/End: Original strand, 18611192 - 18611254
Alignment:
Q  504 aaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagat 566  Q
    ||||||| |||||||||| |||||| |||||||| ||||||||||| ||||||||||||||||    
T  18611192 aaagttattatgcataagacatttctttatgcactctgcataaacacttcacaaccatcagat 18611254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 31216676 - 31216730
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    |||||||| |||||||||||||||| ||||||||||  |||||||||||||||||    
T  31216676 tgcataagtcatttccttatgcaccgtgcataaacacatcacaaccatcagattt 31216730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 514 - 568
Target Start/End: Complemental strand, 34870138 - 34870084
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||||||||||||||||||| || |||||||  |||||||||||||||||    
T  34870138 tgcataagccatttccttatgcaccatgtataaacacatcacaaccatcagattt 34870084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 514 - 561
Target Start/End: Original strand, 30908666 - 30908713
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccat 561  Q
    |||||||| |||||||||||||||| |||||||||| |||||||||||    
T  30908666 tgcataagtcatttccttatgcaccgtgcataaacacttcacaaccat 30908713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 514 - 568
Target Start/End: Complemental strand, 1536948 - 1536894
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||  ||||||||||||||| ||||||||||  |||||||||||||||||    
T  1536948 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 1536894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 6900817 - 6900871
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||  ||||||||||||||| ||||||||||  |||||||||||||||||    
T  6900817 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 6900871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 504 - 554
Target Start/End: Original strand, 32556348 - 32556398
Alignment:
Q  504 aaagttactatgcataagccatttccttatgcaccctgcataaacatttca 554  Q
    ||||||| |||||||||| ||||| ||||||||||||||||||||| ||||    
T  32556348 aaagttattatgcataagtcattttcttatgcaccctgcataaacaattca 32556398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 527 - 566
Target Start/End: Original strand, 35119261 - 35119300
Alignment:
Q  527 tccttatgcaccctgcataaacatttcacaaccatcagat 566  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  35119261 tccttatgcaccgtgcataaacacttcacaaccatcagat 35119300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 7089096 - 7089150
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||  ||||||||||||||| ||||||||||  |||||| ||||||||||    
T  7089096 tgcataagttatttccttatgcaccgtgcataaacacatcacaatcatcagattt 7089150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 15493188 - 15493242
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||||||||||||||| ||| ||||||||||  ||| |||||| ||||||    
T  15493188 tgcataagccatttccttatgtaccgtgcataaacacatcataaccattagattt 15493242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 503 - 576
Target Start/End: Original strand, 34875492 - 34875565
Alignment:
Q  503 caaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagatttgttcgcac 576  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  34875492 caaagttattatgcataagccatttccttatgcaccctgcataaacacttcacaaccatcagatttgatcgcac 34875565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 504 - 566
Target Start/End: Original strand, 5757390 - 5757452
Alignment:
Q  504 aaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagat 566  Q
    ||||||| |||||||||| |||||||||||||||| |||||||||| ||||||||||||||||    
T  5757390 aaagttattatgcataagacatttccttatgcaccgtgcataaacacttcacaaccatcagat 5757452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 507 - 569
Target Start/End: Complemental strand, 39007708 - 39007646
Alignment:
Q  507 gttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagatttg 569  Q
    |||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||    
T  39007708 gttattatgcataagtcatttccttatgcaccctgcataaacacttcacaaccatcatatttg 39007646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 504 - 568
Target Start/End: Complemental strand, 44141313 - 44141249
Alignment:
Q  504 aaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    |||||||  ||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||    
T  44141313 aaagttatcatgcataagtcatttccttatgcaccctgcataaacacttcacaaccatctgattt 44141249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 763711 - 763765
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||||||||||||||||||| ||||||||||  |||||||||||||||||    
T  763711 tgcataagccatttccttatgcaccgtgcataaacacgtcacaaccatcagattt 763765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 514 - 568
Target Start/End: Complemental strand, 16933296 - 16933242
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    |||||||| |||||||||||||||| ||||||||||  |||||||||||||||||    
T  16933296 tgcataagtcatttccttatgcaccgtgcataaacacatcacaaccatcagattt 16933242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 514 - 568
Target Start/End: Complemental strand, 16938679 - 16938625
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    |||||||| |||||||||||||||| ||||||||||  |||||||||||||||||    
T  16938679 tgcataagtcatttccttatgcaccgtgcataaacacatcacaaccatcagattt 16938625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 504 - 557
Target Start/End: Complemental strand, 6797447 - 6797394
Alignment:
Q  504 aaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaa 557  Q
    ||||||| |||||||||| |||||||||||||| |||||||||||| |||||||    
T  6797447 aaagttattatgcataagtcatttccttatgcatcctgcataaacacttcacaa 6797394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 527 - 566
Target Start/End: Original strand, 30428899 - 30428938
Alignment:
Q  527 tccttatgcaccctgcataaacatttcacaaccatcagat 566  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  30428899 tccttatgcaccgtgcataaacatttcacaaccatcagat 30428938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 504 - 563
Target Start/End: Complemental strand, 46346778 - 46346719
Alignment:
Q  504 aaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatca 563  Q
    ||||||| |||||||||| ||||| |||||||| |||| ||||||| |||||||||||||    
T  46346778 aaagttattatgcataagtcattttcttatgcatcctgtataaacacttcacaaccatca 46346719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 514 - 568
Target Start/End: Complemental strand, 11732699 - 11732645
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    |||||||||||||| |||||||||  |||||||||| ||||||||||| ||||||    
T  11732699 tgcataagccattttcttatgcactgtgcataaacacttcacaaccattagattt 11732645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 514 - 568
Target Start/End: Complemental strand, 20000726 - 20000672
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    |||||||| ||||| |||||||||| ||||||||||  |||||||||||||||||    
T  20000726 tgcataagtcatttacttatgcaccgtgcataaacacatcacaaccatcagattt 20000672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 514 - 568
Target Start/End: Complemental strand, 30884274 - 30884220
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||  ||||||||||||||| ||||||||||  |||||||||||||||||    
T  30884274 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 30884220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 31660083 - 31660137
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||  ||||||||||||||| ||||||||||  |||||||||||||||||    
T  31660083 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 31660137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 514 - 568
Target Start/End: Complemental strand, 41911161 - 41911107
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||  ||||||||||||||| ||||||||||  |||||||||||||||||    
T  41911161 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 41911107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 46358534 - 46358588
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||  ||||||||||||||| ||||||||||  |||||||||||||||||    
T  46358534 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 46358588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 514 - 561
Target Start/End: Original strand, 24359885 - 24359932
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccat 561  Q
    |||||||| |||||||||||||||| ||||| |||| |||||||||||    
T  24359885 tgcataagtcatttccttatgcaccgtgcatcaacacttcacaaccat 24359932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 527 - 566
Target Start/End: Original strand, 28396748 - 28396787
Alignment:
Q  527 tccttatgcaccctgcataaacatttcacaaccatcagat 566  Q
    |||||||||||| |||||||||||||||||| ||||||||    
T  28396748 tccttatgcaccgtgcataaacatttcacaatcatcagat 28396787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 527 - 566
Target Start/End: Original strand, 46024053 - 46024092
Alignment:
Q  527 tccttatgcaccctgcataaacatttcacaaccatcagat 566  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  46024053 tccttatgcaccgtgcataaacacttcacaaccatcagat 46024092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 504 - 566
Target Start/End: Complemental strand, 27335690 - 27335629
Alignment:
Q  504 aaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagat 566  Q
    ||||||| |||  ||||| ||||| |||||||||| |||||||||| ||||||||||||||||    
T  27335690 aaagttattataaataagtcattttcttatgcacc-tgcataaacacttcacaaccatcagat 27335629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 568
Target Start/End: Complemental strand, 15974975 - 15974934
Alignment:
Q  527 tccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    |||||||||||| |||||||||| ||||||||||||| ||||    
T  15974975 tccttatgcaccgtgcataaacacttcacaaccatcatattt 15974934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 515 - 568
Target Start/End: Original strand, 35736963 - 35737016
Alignment:
Q  515 gcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    |||||||  ||||||||||||||| ||||||||||  |||||||||||| ||||    
T  35736963 gcataagttatttccttatgcaccgtgcataaacacatcacaaccatcatattt 35737016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 504 - 549
Target Start/End: Complemental strand, 45402932 - 45402887
Alignment:
Q  504 aaagttactatgcataagccatttccttatgcaccctgcataaaca 549  Q
    ||||||| ||||||||||  |||||||||||||||| |||||||||    
T  45402932 aaagttattatgcataagttatttccttatgcacccagcataaaca 45402887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 5e-24; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 503 - 576
Target Start/End: Original strand, 53594971 - 53595044
Alignment:
Q  503 caaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagatttgttcgcac 576  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  53594971 caaagttattatgcataagccattttcttatgcaccctgcataaacacttcacaaccatcagatttgatcgcac 53595044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 504 - 568
Target Start/End: Original strand, 47728392 - 47728456
Alignment:
Q  504 aaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||| |||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||    
T  47728392 aaagttattatgcataagtcattttcttatgcaccctgcataaacacttcacaaccatcagattt 47728456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 504 - 568
Target Start/End: Complemental strand, 51682064 - 51682000
Alignment:
Q  504 aaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||    
T  51682064 aaagttattatgcataagtcatttccttatgcaccctgcataaacacttcgcaaccatcagattt 51682000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 504 - 568
Target Start/End: Complemental strand, 26662600 - 26662536
Alignment:
Q  504 aaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||| | ||||||||||||||||||||||||| ||||||||||  |||||||||||||||||    
T  26662600 aaagttattgtgcataagccatttccttatgcaccgtgcataaacacatcacaaccatcagattt 26662536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 504 - 559
Target Start/End: Original strand, 23755289 - 23755344
Alignment:
Q  504 aaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaacc 559  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||    
T  23755289 aaagttattatgcataagacatttccttatgcaccctgcataaacacttcacaacc 23755344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 504 - 557
Target Start/End: Original strand, 32232995 - 32233048
Alignment:
Q  504 aaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaa 557  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||| |||||||    
T  32232995 aaagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaa 32233048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 503 - 568
Target Start/End: Complemental strand, 37319523 - 37319458
Alignment:
Q  503 caaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    |||||||| |||||||||| ||||| ||||||||||||||||||||| ||||||  ||||||||||    
T  37319523 caaagttattatgcataagtcattttcttatgcaccctgcataaacacttcacattcatcagattt 37319458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 504 - 563
Target Start/End: Original strand, 23699331 - 23699390
Alignment:
Q  504 aaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatca 563  Q
    ||||||| |||||||||| ||||| ||||| ||||||||||||||| |||||||||||||    
T  23699331 aaagttattatgcataagacattttcttatacaccctgcataaacacttcacaaccatca 23699390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 504 - 563
Target Start/End: Original strand, 23717786 - 23717845
Alignment:
Q  504 aaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatca 563  Q
    ||||||| |||||||||| ||||| ||||| ||||||||||||||| |||||||||||||    
T  23717786 aaagttattatgcataagacattttcttatacaccctgcataaacacttcacaaccatca 23717845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 504 - 563
Target Start/End: Original strand, 23736242 - 23736301
Alignment:
Q  504 aaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatca 563  Q
    ||||||| |||||||||| ||||| ||||| ||||||||||||||| |||||||||||||    
T  23736242 aaagttattatgcataagacattttcttatacaccctgcataaacacttcacaaccatca 23736301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 514 - 561
Target Start/End: Complemental strand, 34563399 - 34563352
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccat 561  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||    
T  34563399 tgcataagccattttcttatgcaccgtgcataaacatttcacaaccat 34563352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 575 - 622
Target Start/End: Original strand, 46478254 - 46478301
Alignment:
Q  575 acatctcttctccaaagaatcagacaaaaacatcgtgttttcaccact 622  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||    
T  46478254 acatctcttctccaaagaatcagacaacaacatcgtgttttctccact 46478301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 514 - 561
Target Start/End: Complemental strand, 51846832 - 51846785
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccat 561  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||    
T  51846832 tgcataagccatttccttatgcaccgtgcataaacacttcacaaccat 51846785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 514 - 568
Target Start/End: Complemental strand, 9596032 - 9595978
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||| ||||||||||||||| ||||||||||  |||||||||||||||||    
T  9596032 tgcataagctatttccttatgcaccgtgcataaacacatcacaaccatcagattt 9595978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 514 - 568
Target Start/End: Complemental strand, 33414065 - 33414011
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    |||||||| |||||||||||||||| ||||||||||  |||||||||||||||||    
T  33414065 tgcataagtcatttccttatgcaccgtgcataaacacatcacaaccatcagattt 33414011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 514 - 568
Target Start/End: Complemental strand, 3475459 - 3475405
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||  ||||||||||||||| ||||||||||  |||||||||||||||||    
T  3475459 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 3475405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 9106281 - 9106335
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    |||||||| |||||||||||||||| ||||||||||  | |||||||||||||||    
T  9106281 tgcataagtcatttccttatgcaccgtgcataaacacattacaaccatcagattt 9106335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 19284685 - 19284739
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||  ||||||||||||||| ||||||||||  |||||||||||||||||    
T  19284685 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 19284739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 512 - 566
Target Start/End: Complemental strand, 28300006 - 28299952
Alignment:
Q  512 tatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagat 566  Q
    |||||||||| |||||||||||| ||| |||||||||| |||||||| |||||||    
T  28300006 tatgcataagtcatttccttatgtaccatgcataaacacttcacaactatcagat 28299952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 524 - 566
Target Start/End: Original strand, 39099220 - 39099262
Alignment:
Q  524 atttccttatgcaccctgcataaacatttcacaaccatcagat 566  Q
    ||||||||||||||| |||||||| ||||||||||||||||||    
T  39099220 atttccttatgcaccgtgcataaatatttcacaaccatcagat 39099262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 503 - 569
Target Start/End: Complemental strand, 39195171 - 39195105
Alignment:
Q  503 caaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagatttg 569  Q
    |||||||| |||||||||| |||||||| ||||||||||||| |||| || | |||||||| |||||    
T  39195171 caaagttattatgcataagtcatttcctcatgcaccctgcatgaacactttataaccatcaaatttg 39195105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 514 - 568
Target Start/End: Complemental strand, 46237810 - 46237756
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||  ||||||||||||||| ||||||||||  |||||||||||||||||    
T  46237810 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 46237756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 47335046 - 47335100
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||  ||||||||||||||| ||||||||||  |||||||||||||||||    
T  47335046 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 47335100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 568
Target Start/End: Complemental strand, 19385354 - 19385313
Alignment:
Q  527 tccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    |||||||||||| |||||||||| ||||||||||||||||||    
T  19385354 tccttatgcaccgtgcataaacacttcacaaccatcagattt 19385313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 568
Target Start/End: Complemental strand, 51362477 - 51362436
Alignment:
Q  527 tccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    |||||||||||| |||||||||| ||||||||||||||||||    
T  51362477 tccttatgcaccgtgcataaacacttcacaaccatcagattt 51362436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 514 - 561
Target Start/End: Complemental strand, 41192402 - 41192355
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccat 561  Q
    |||||||| |||||||||||||||| | |||||||| |||||||||||    
T  41192402 tgcataagtcatttccttatgcaccgtacataaacacttcacaaccat 41192355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 527 - 566
Target Start/End: Original strand, 50754032 - 50754071
Alignment:
Q  527 tccttatgcaccctgcataaacatttcacaaccatcagat 566  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  50754032 tccttatgcaccgtgcataaacacttcacaaccatcagat 50754071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 52987689 - 52987650
Alignment:
Q  527 tccttatgcaccctgcataaacatttcacaaccatcagat 566  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  52987689 tccttatgcaccgtgcataaacacttcacaaccatcagat 52987650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 514 - 568
Target Start/End: Complemental strand, 2941978 - 2941924
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||  ||||||||||| ||| ||||||||||  |||||||||||||||||    
T  2941978 tgcataagttatttccttatgtaccgtgcataaacacatcacaaccatcagattt 2941924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 514 - 568
Target Start/End: Complemental strand, 30947963 - 30947909
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    |||||||| |||||||||||||||| ||||||||||  |||||| ||||| ||||    
T  30947963 tgcataagtcatttccttatgcaccgtgcataaacacatcacaatcatcaaattt 30947909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 54379177 - 54379231
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||  ||||||||||||||| ||||||||||  |||||||||||| ||||    
T  54379177 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcatattt 54379231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0571 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 514 - 568
Target Start/End: Complemental strand, 728 - 674
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||||||||||||||||||| ||||||||||  |||||||||||||||||    
T  728 tgcataagccatttccttatgcaccgtgcataaacacatcacaaccatcagattt 674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 33698 - 33752
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||||||||||||||||||| ||||||||||  |||||||||||||||||    
T  33698 tgcataagccatttccttatgcaccgtgcataaacacatcacaaccatcagattt 33752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0581 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0581
Description:

Target: scaffold0581; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 514 - 568
Target Start/End: Complemental strand, 8473 - 8419
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    ||||||||||||||||||||||||  ||||||||||  |||||||||||||||||    
T  8473 tgcataagccatttccttatgcactgtgcataaacacatcacaaccatcagattt 8419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0460 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 512 - 557
Target Start/End: Original strand, 1616 - 1661
Alignment:
Q  512 tatgcataagccatttccttatgcaccctgcataaacatttcacaa 557  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||    
T  1616 tatgcataagtcatttccttatgcaccctgcataaacacttcacaa 1661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 504 - 557
Target Start/End: Original strand, 209330 - 209383
Alignment:
Q  504 aaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaa 557  Q
    ||||||| |||||||||| ||||| ||||||||||||||||||||| |||||||    
T  209330 aaagttattatgcataagtcattttcttatgcaccctgcataaacacttcacaa 209383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 512 - 557
Target Start/End: Original strand, 171517 - 171562
Alignment:
Q  512 tatgcataagccatttccttatgcaccctgcataaacatttcacaa 557  Q
    |||||||||| ||||||||||||||||||| ||||||| |||||||    
T  171517 tatgcataagtcatttccttatgcaccctgtataaacacttcacaa 171562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 568
Target Start/End: Complemental strand, 25271 - 25230
Alignment:
Q  527 tccttatgcaccctgcataaacatttcacaaccatcagattt 568  Q
    |||||||||||| |||||||||| ||||||||||||||||||    
T  25271 tccttatgcaccgtgcataaacacttcacaaccatcagattt 25230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 512 - 557
Target Start/End: Original strand, 51371 - 51416
Alignment:
Q  512 tatgcataagccatttccttatgcaccctgcataaacatttcacaa 557  Q
    |||||||||| ||||| ||||||||||||||||||||| |||||||    
T  51371 tatgcataagtcattttcttatgcaccctgcataaacacttcacaa 51416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 514 - 561
Target Start/End: Original strand, 24288 - 24335
Alignment:
Q  514 tgcataagccatttccttatgcaccctgcataaacatttcacaaccat 561  Q
    ||||||||||||||||||||| ||| ||||||||||  ||||||||||    
T  24288 tgcataagccatttccttatgtaccgtgcataaacacatcacaaccat 24335  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 504 - 554
Target Start/End: Original strand, 450206 - 450256
Alignment:
Q  504 aaagttactatgcataagccatttccttatgcaccctgcataaacatttca 554  Q
    ||||||| |||||||||| ||||||||||| |||| |||||||||| ||||    
T  450206 aaagttattatgcataagtcatttccttatacaccttgcataaacacttca 450256  T

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Target: scaffold0012 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 504 - 557
Target Start/End: Original strand, 119206 - 119259
Alignment:
Q  504 aaagttactatgcataagccatttccttatgcaccctgcataaacatttcacaa 557  Q
    ||||||| ||| |||||| ||||||  ||||||||||||||||||| |||||||    
T  119206 aaagttattatacataagtcatttctatatgcaccctgcataaacacttcacaa 119259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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