View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17543_low_31 (Length: 216)
Name: NF17543_low_31
Description: NF17543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17543_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 28893687 - 28893874
Alignment:
| Q |
16 |
cttccaactgcaacatgatactccccaatatttcagttaatattttcttgaattcttcttctttcaccaactttgcatcatctgcactcaccaacttgaa |
115 |
Q |
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| T |
28893687 |
cttccaactgcaacatgatactccccaatatttcagttaatattttcttgaattcttcttctttcaccaactttgcatcatctgcactcaccaacttgaa |
28893786 |
T |
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| Q |
116 |
cacttcaccaattaccttatccatctgcaaaaacaaatacacatgcacaaatattcagttcaatttcagtctcaattagacatatgaa |
203 |
Q |
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| T |
28893787 |
cacttcaccaattaccttatccatctgcaaaaacaaatacacatgcacaaatattcaattcaatttcagtctcaattagacatatgaa |
28893874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 55099260 - 55099197
Alignment:
| Q |
16 |
cttccaactgcaacatgatactccccaatatttcagttaatattttcttgaattcttcttcttt |
79 |
Q |
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|||| |||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||| |
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| T |
55099260 |
cttctaactgcaacatgatactccccagtatttcaattaaaattttcttgaattcttcttcttt |
55099197 |
T |
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