View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17543_low_5 (Length: 637)
Name: NF17543_low_5
Description: NF17543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17543_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 189 - 624
Target Start/End: Complemental strand, 8766879 - 8766452
Alignment:
| Q |
189 |
tttagattgcacttccaccatattagctttaaataatcttcaccaccgttgatttgaaatcgaatgaccaagatcaataaatgtgttactatgagtgcaa |
288 |
Q |
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| T |
8766879 |
tttagattgcacttccaccatattagctttaaataatcttcaccaccgttgatttgaaatcgaatgaccaagatcaataaacgtgttactatgagttcaa |
8766780 |
T |
|
| Q |
289 |
tccaaatccgctataataacattttcatgttgtatatttattttggaccaatacttcttggttacttatatagttatattattatgtgtcacactatagg |
388 |
Q |
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| T |
8766779 |
tccaaatccactgtaataacattttcatgttgtatatttattttggaccaatacttcttggttacttatat--------tattatgtgtctcactatagg |
8766688 |
T |
|
| Q |
389 |
gaatgctacttttttggctaacgactatgattccaaatctaagtccttgtgatcctatcactatgagctgcaactctcccacaacatcacagcttgcttt |
488 |
Q |
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|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8766687 |
gaatgctacttttttggctaacaactatgattccaaacctaagtccttgtgatcctatcactatgagctgcaactctcccacaacatcacagcttgcttt |
8766588 |
T |
|
| Q |
489 |
cttatactcttctctatgcttaatctccattggagctggtggtgtaagagcttcctctttagcctttggcattgatcaactaaacaaggaaaaagatgcc |
588 |
Q |
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| T |
8766587 |
cttatactcttctctatgcttaatctccattggagctggtggtgtaagagcttcctctttagcctttggcattgatcaactaaacaaggaaaaagatgca |
8766488 |
T |
|
| Q |
589 |
ggaatcatagagggctactttaattggacctatgct |
624 |
Q |
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| T |
8766487 |
ggaatcatagagggctactttaattggacctatgct |
8766452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 287 - 624
Target Start/End: Complemental strand, 8749211 - 8748882
Alignment:
| Q |
287 |
aatccaaatccgctataataacattttcatgttgtatatttattttggaccaatacttcttggttacttatatagttatattattatgtgtcacactata |
386 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||||||| |||| ||||||| ||||||||||| |
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| T |
8749211 |
aatctaaatccgctataataacattttcatgttgtatatttatttttgatcaatattttttggttactgatat--------tattatgcgtcacactata |
8749120 |
T |
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| Q |
387 |
gggaatgctacttttttggctaacgactatgattccaaatctaagtccttgtgatcctatcactatgagctgcaactctcccacaacatcacagcttgct |
486 |
Q |
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| T |
8749119 |
gggaatgctacttttttggctaacagctatgattccaaacctaagtccttgtgatcaattcactatgagctgcaactctccgacaacatcacaacttgct |
8749020 |
T |
|
| Q |
487 |
ttcttatactcttctctatgcttaatctccattggagctggtggtgtaagagcttcctctttagcctttggcattgatcaactaaacaaggaaaaagatg |
586 |
Q |
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||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| || ||| ||||||||||||| |||||| ||||||||||||||| |
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| T |
8749019 |
ttcttatactcttctctatgcctaatcgccattggagctggtggtgtaagagcttcttccttaccctttggcattgaccaactagacaaggaaaaagatg |
8748920 |
T |
|
| Q |
587 |
ccggaatcatagagggctactttaattggacctatgct |
624 |
Q |
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| T |
8748919 |
caggaatcatagagggctactttaattggacctatgct |
8748882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 368 - 624
Target Start/End: Complemental strand, 8756689 - 8756433
Alignment:
| Q |
368 |
tattatgtgtcacactatagggaatgctacttttttggctaacgactatgattccaaatctaagtccttgtgatcctatcactatgagctgcaactctcc |
467 |
Q |
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|||| |||||||| |||||||||||||||||| |||||||||| ||| ||||| || ||||||||||||||||| | | |||||||||||||||||| |
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| T |
8756689 |
tattttgtgtcacgctatagggaatgctacttctttggctaacagctaccattcccaacctaagtccttgtgatccattgaatatgagctgcaactctcc |
8756590 |
T |
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| Q |
468 |
cacaacatcacagcttgctttcttatactcttctctatgcttaatctccattggagctggtggtgtaagagcttcctctttagcctttggcattgatcaa |
567 |
Q |
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||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || || ||||||||||||||||| ||| |
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| T |
8756589 |
cacaatatcacaacttgctttcttatactcttctctatgcctaatctccattggagctggtggtgtaagagcctcttccttagcctttggcattgaccaa |
8756490 |
T |
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| Q |
568 |
ctaaacaaggaaaaagatgccggaatcatagagggctactttaattggacctatgct |
624 |
Q |
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||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
8756489 |
ctagacaaggaaaaagatgcaggaatcatagagggctactttaattggagctatgct |
8756433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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