View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17543_low_6 (Length: 633)

Name: NF17543_low_6
Description: NF17543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17543_low_6
NF17543_low_6
[»] chr4 (14 HSPs)
chr4 (32-614)||(31498790-31499376)
chr4 (49-326)||(31472577-31472854)
chr4 (64-271)||(31479090-31479297)
chr4 (362-540)||(31478809-31478987)
chr4 (362-540)||(31503996-31504172)
chr4 (377-541)||(31157246-31157410)
chr4 (369-561)||(31148324-31148516)
chr4 (388-559)||(31472335-31472506)
chr4 (153-215)||(31148105-31148167)
chr4 (69-202)||(31156947-31157080)
chr4 (66-271)||(31504275-31504474)
chr4 (429-561)||(31017629-31017761)
chr4 (465-545)||(31526524-31526604)
chr4 (247-326)||(31157128-31157204)
[»] chr6 (26 HSPs)
chr6 (66-209)||(33285315-33285458)
chr6 (384-538)||(33358903-33359057)
chr6 (384-535)||(33057605-33057756)
chr6 (76-204)||(28870318-28870446)
chr6 (388-535)||(33271865-33272012)
chr6 (68-209)||(33387877-33388018)
chr6 (68-326)||(33644570-33644825)
chr6 (66-335)||(33304205-33304471)
chr6 (388-531)||(33644365-33644508)
chr6 (384-534)||(33285654-33285804)
chr6 (388-531)||(33262666-33262809)
chr6 (388-535)||(33399094-33399241)
chr6 (384-551)||(33410041-33410208)
chr6 (66-207)||(33262347-33262488)
chr6 (69-209)||(9166485-9166625)
chr6 (388-535)||(33304524-33304671)
chr6 (66-207)||(31562970-31563111)
chr6 (388-559)||(31562618-31562789)
chr6 (388-551)||(33388200-33388363)
chr6 (68-209)||(33057301-33057442)
chr6 (388-502)||(28870023-28870137)
chr6 (76-207)||(33409709-33409840)
chr6 (386-531)||(9166790-9166935)
chr6 (66-128)||(33358654-33358716)
chr6 (132-207)||(33271582-33271657)
chr6 (68-202)||(33398795-33398929)
[»] chr2 (2 HSPs)
chr2 (374-561)||(17440675-17440862)
chr2 (52-209)||(17441012-17441163)
[»] scaffold1408 (2 HSPs)
scaffold1408 (67-207)||(366-506)
scaffold1408 (384-535)||(683-834)
[»] scaffold0428 (2 HSPs)
scaffold0428 (67-207)||(6112-6252)
scaffold0428 (384-535)||(6429-6580)
[»] chr7 (1 HSPs)
chr7 (389-502)||(6785241-6785354)


Alignment Details
Target: chr4 (Bit Score: 513; Significance: 0; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 32 - 614
Target Start/End: Complemental strand, 31499376 - 31498790
Alignment:
Q  32 tggcaggtatctcgaccgatgatgaagtgccgtagaaaatactgcacaacatacaaagccaatgatattattgttattgtcatggataatgggagatgag 131  Q
    |||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31499376 tggcaggtatctcgacggatgatgaggtgccatagaaaatactgcacaacatacaaagccaatgatattattgttattgtcatggataatgggagatgag 31499277  T
Q  132 tctattcgtattgaatcacccttgctctgattcttaaaccaacttgatatttcacttcctggagtaacaatatgaatcacatcataggagtcagggaagg 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  31499276 tctattcgtattgaatcacccttgctctgattcttaaaccaacttgatatttcacttcctggagtaacaatatgaatcacatcataggagtcagggaaga 31499177  T
Q  232 attgtgggttcatccgaatgaatt----gtatcatcaatgaaaaggcaatgcttctgcaataatgttcactctcgcacaatttaggacagttgaaaatgt 327  Q
    ||||||||||||||||||||||||    | |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  31499176 attgtgggttcatccgaatgaattaattgaatcatcaatgaaaatgcaatgctgctgcaataatgttcactctcgcacaatttaggacagttgaaaatgt 31499077  T
Q  328 ataatcctcttttcttcacagttgnnnnnnnacgaagattgtgcttgatagcagtgggaaaaggaagttgaggcaaagattccaacaatttgcaatgttg 427  Q
    ||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  31499076 ataatcctcttttcttcacagttgtttttttacgaagattgtgcttgatagcagtgggaaaaggaagttgaggcaaagattccaacaatttgcaatgttc 31498977  T
Q  428 taagtttaaacatacaagtttggaaaggtccctcaggctaggtaatgtcacaaacttgtttccccctaaatttaactcttctaaccaatgtaaacatcca 527  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31498976 taagtttaaacatacaagtttggaaaggtccctcaggctaggtaatgtcacaaacttgtttccccctaaatttaactcttctaaccaatgtaaacatcca 31498877  T
Q  528 attgcatcggggagttggtttagaccgcaaaaacatgataagctaataatggaagtcaaccaatttgtttgtgctgtgggagtggga 614  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31498876 attgcatcggggagttggtttagaccacaaaaacatgataagctaataatggaagtcaaccaatttgtttgtgctgtgggagtggga 31498790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 49 - 326
Target Start/End: Complemental strand, 31472854 - 31472577
Alignment:
Q  49 gatgatgaagtgccgtagaaaatactgcacaacatacaaagccaatgatattattgttattgtcatggataatgggagatgagtctattcgtattgaatc 148  Q
    |||||||| ||||  ||||||||||| ||||||||| | | |||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||    
T  31472854 gatgatgaggtgctatagaaaatactacacaacatatacaaccaatgatattattgttattgtcatgcataatgggagatgagtctaatcgtatcgaatc 31472755  T
Q  149 acccttgctctgattcttaaaccaacttgatatttcacttcctggagtaacaatatgaatcacatcataggagtcagggaaggattgtgggttcatccga 248  Q
    ||||||| ||||||| || |||||||||| |||||||||||||||||||||||| ||||| | ||||||  ||||||||||||||||||| ||   | ||    
T  31472754 acccttgttctgattgttgaaccaacttggtatttcacttcctggagtaacaatctgaattatatcataacagtcagggaaggattgtggatttgcctga 31472655  T
Q  249 atgaattgtatcatcaatgaaaaggcaatgcttctgcaataatgttcactctcgcacaatttaggacagttgaaaatg 326  Q
    |||| |||||||||| ||||||| |  ||| |  ||||| ||||||| ||||| | ||| ||||||||||||||||||    
T  31472654 atgagttgtatcatccatgaaaatgtcatgttagtgcaacaatgttccctctcacccaaattaggacagttgaaaatg 31472577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 64 - 271
Target Start/End: Complemental strand, 31479297 - 31479090
Alignment:
Q  64 tagaaaatactgcacaacatacaaagccaatgatattattgttattgtcatggataatgggagatgagtctattcgtattgaatcacccttgctctgatt 163  Q
    ||||||||||| ||||||||||| |||||| |||||||||||||||||| || ||||| ||||| || |||||||||||| ||| |||||||||||||||    
T  31479297 tagaaaatactacacaacatacacagccaacgatattattgttattgtcgtgcataatcggagaagaatctattcgtattaaattacccttgctctgatt 31479198  T
Q  164 cttaaaccaacttgatatttcacttcctggagtaacaatatgaatcacatcataggagtcagggaaggattgtgggttcatccgaatgaattgtatcatc 263  Q
     || ||||||||||  |||||||| |||||||||||||| |||| |  |||| |||||||| || || ||||| ||||   | |||||||||||||||||    
T  31479197 gttgaaccaacttggcatttcactacctggagtaacaatttgaaccctatcagaggagtcatgggagaattgtcggtttgcctgaatgaattgtatcatc 31479098  T
Q  264 aatgaaaa 271  Q
     |||||||    
T  31479097 catgaaaa 31479090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 362 - 540
Target Start/End: Complemental strand, 31478987 - 31478809
Alignment:
Q  362 aagattgtgcttgatagcagtgggaaaaggaagttgaggcaaagattccaacaatttgcaatgttgtaagtttaaacatacaagtttggaaaggtccctc 461  Q
    ||||| ||||| ||||||||| ||| ||||||||  ||||||||||| |||||  |||||||| | |||| ||||| |||||||||| ||||| ||||||    
T  31478987 aagatcgtgctcgatagcagtaggagaaggaagtacaggcaaagatttcaacagcttgcaatgctctaagcttaaatatacaagttttgaaagctccctc 31478888  T
Q  462 aggctaggtaatgtcacaaacttgtttccccctaaatttaactcttctaaccaatgtaaacatccaattgcatcgggga 540  Q
    || ||||||| ||||||||| ||||||||||||||||||||  |||||||||||| || |||||||||||||| |||||    
T  31478887 agactaggtactgtcacaaaattgtttccccctaaatttaatgcttctaaccaatatagacatccaattgcattgggga 31478809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 362 - 540
Target Start/End: Complemental strand, 31504172 - 31503996
Alignment:
Q  362 aagattgtgcttgatagcagtgggaaaaggaagttgaggcaaagattccaacaatttgcaatgttgtaagtttaaacatacaagtttggaaaggtccctc 461  Q
    ||||| ||||| ||||||||| ||| |||||||   ||||||||||||||||| ||||||||| |  ||||||||| |||||||||||||||| ||||||    
T  31504172 aagatcgtgctcgatagcagtaggagaaggaagaacaggcaaagattccaacagtttgcaatgctccaagtttaaatatacaagtttggaaagctccctc 31504073  T
Q  462 aggctaggtaatgtcacaaacttgtttccccctaaatttaactcttctaaccaatgtaaacatccaattgcatcgggga 540  Q
    |||||||||| ||||||||| || ||||||||||| ||||| | ||||||||||  || | |||||||||| |||||||    
T  31504072 aggctaggtactgtcacaaaattatttccccctaagtttaaatattctaaccaa--tatagatccaattgcgtcgggga 31503996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 377 - 541
Target Start/End: Original strand, 31157246 - 31157410
Alignment:
Q  377 agcagtgggaaaaggaagttgaggcaaagattccaacaatttgcaatgttgtaagtttaaacatacaagtttggaaaggtccctcaggctaggtaatgtc 476  Q
    |||||| ||||||||||||||||||||||||||||| |  |||||||| |  ||||||||| |||||||||||||||| |||||||||||||| | ||||    
T  31157246 agcagtaggaaaaggaagttgaggcaaagattccaaaagcttgcaatgctccaagtttaaatatacaagtttggaaagctccctcaggctaggcagtgtc 31157345  T
Q  477 acaaacttgtttccccctaaatttaactcttctaaccaatgtaaacatccaattgcatcggggag 541  Q
    ||||| ||||| ||||||| ||||||   |||||  | | ||| ||||||||||||||| |||||    
T  31157346 acaaaattgttcccccctatatttaatctttctagtcgaagtagacatccaattgcatcagggag 31157410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 369 - 561
Target Start/End: Original strand, 31148324 - 31148516
Alignment:
Q  369 tgcttgatagcagtgggaaaaggaagttgaggcaaagattccaacaatttgcaatgttgtaagtttaaacatacaagtttggaaaggtccctcaggctag 468  Q
    |||| ||||||||| | |||||||||||||||||| |||| |||||| || ||||| || ||||||||| || ||||| |||| || | ||| |||||||    
T  31148324 tgctcgatagcagtagcaaaaggaagttgaggcaacgatttcaacaacttacaatgctgcaagtttaaatatgcaagtctggatagcttcctaaggctag 31148423  T
Q  469 gtaatgtcacaaacttgtttccccctaaatttaactcttctaaccaatgtaaacatccaattgcatcggggagttggtttagaccgcaaaaac 561  Q
    |||  |||||||| ||||||||||||| ||||||   ||||| |||| |||||| |||||||||||  || |||||| ||| ||| |||||||    
T  31148424 gtaccgtcacaaaattgtttccccctagatttaatctttctagccaacgtaaacgtccaattgcattcggtagttggcttataccacaaaaac 31148516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 388 - 559
Target Start/End: Complemental strand, 31472506 - 31472335
Alignment:
Q  388 aaggaagttgaggcaaagattccaacaatttgcaatgttgtaagtttaaacatacaagtttggaaaggtccctcaggctaggtaatgtcacaaacttgtt 487  Q
    ||||||||| ||||||||||| ||||     || ||||| |||||||||| |||||||||||||||| |||||| ||||||||| ||||||||| || ||    
T  31472506 aaggaagtttaggcaaagatttcaactgcgggcgatgttctaagtttaaatatacaagtttggaaagctccctcgggctaggtactgtcacaaaattatt 31472407  T
Q  488 tccccctaaatttaactcttctaaccaatgtaaacatccaattgcatcggggagttggtttagaccgcaaaa 559  Q
     || |||| ||||||  || ||||||| | || ||||||||||| || ||||| |||   ||||||||||||    
T  31472406 ccctcctacatttaatcctactaaccagtatagacatccaattgaattggggatttgacatagaccgcaaaa 31472335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 153 - 215
Target Start/End: Original strand, 31148105 - 31148167
Alignment:
Q  153 ttgctctgattcttaaaccaacttgatatttcacttcctggagtaacaatatgaatcacatca 215  Q
    ||||||||||| || |||||||||| |||||||||||| ||||||||||| ||||||||||||    
T  31148105 ttgctctgattgttgaaccaacttggtatttcacttcccggagtaacaatttgaatcacatca 31148167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 202
Target Start/End: Original strand, 31156947 - 31157080
Alignment:
Q  69 aatactgcacaacatacaaagccaatgatattattgttattgtcatggataatgggagatgagtctattcgtattgaatcacccttgctctgattcttaa 168  Q
    ||||||||||||||  ||| |||||||| || ||||| |||||  |  |||||  |||||  ||| |||| |||||||||||||| ||||||||| || |    
T  31156947 aatactgcacaacaagcaatgccaatgaaatcattgtcattgttgtccataatctgagataggtccattcttattgaatcaccctcgctctgattgttga 31157046  T
Q  169 accaacttgatatttcacttcctggagtaacaat 202  Q
    ||||| ||| |||||||||||| ||| |||||||    
T  31157047 accaaattggtatttcacttccaggaataacaat 31157080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 271
Target Start/End: Complemental strand, 31504474 - 31504275
Alignment:
Q  66 gaaaatactgcacaacatacaaagccaatgatattattgttattgtcatggataatgggagatgagtctattcgtattgaatcacccttgctctgattct 165  Q
    ||||||||| ||||||||||| | |||||||||||||| |||  |||||| ||||     ||  |||||||| |||| ||   ||||||||||| ||| |    
T  31504474 gaaaatactacacaacatacacaaccaatgatattatttttaaagtcatgcataa-----gaccagtctatttgtatggagcgacccttgctctaattgt 31504380  T
Q  166 taaaccaacttgatatttcacttcctggagtaacaatatgaatcacatcataggagtcagggaaggattgtgggttcatccgaatgaattgtatcatcaa 265  Q
    | |||||||||| ||||||| |||| |||||||| || |||||||||| | || |||| |   |||||||||||||   |  |||||||||||||||| |    
T  31504379 tgaaccaacttggtatttcatttccaggagtaacgat-tgaatcacatgaaagtagtcggatgaggattgtgggtttgccttaatgaattgtatcatcca 31504281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 429 - 561
Target Start/End: Original strand, 31017629 - 31017761
Alignment:
Q  429 aagtttaaacatacaagtttggaaaggtccctcaggctaggtaatgtcacaaacttgtttccccctaaatttaactcttc-taaccaatgtaaacatcca 527  Q
    |||| |||| |||||||||| ||||| ||||| || ||||| |  |||||||| |||||||||  ||||  ||| ||||| ||||||  ||| |||||||    
T  31017629 aagtctaaatatacaagtttagaaagctccctgagactaggcagagtcacaaaattgtttcccgataaaactaa-tcttcctaaccatcgtatacatcca 31017727  T
Q  528 attgcatcggggagttggtttagaccgcaaaaac 561  Q
    || ||||| |||| |||| |||||||||||||||    
T  31017728 atagcatctgggatttggcttagaccgcaaaaac 31017761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 465 - 545
Target Start/End: Original strand, 31526524 - 31526604
Alignment:
Q  465 ctaggtaatgtcacaaacttgtttccccctaaatttaactcttctaaccaatgtaaacatccaattgcatcggggagttgg 545  Q
    ||||| ||||||||||| ||||||||||||||||||||   |||||||||| |||  || ||||| ||||| |||| ||||    
T  31526524 ctaggcaatgtcacaaaattgtttccccctaaatttaatctttctaaccaaagtaggcaaccaatagcatcagggatttgg 31526604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 326
Target Start/End: Original strand, 31157128 - 31157204
Alignment:
Q  247 gaatgaattgtatcatcaatgaaaaggcaatgcttctgcaataatgttcactctcgcacaatttaggacagttgaaaatg 326  Q
    |||| |||||||||||| ||||||| || |||||  ||||||    ||||||||| | ||||||||||||||||||||||    
T  31157128 gaatcaattgtatcatccatgaaaatgccatgctattgcaatc---ttcactctcacccaatttaggacagttgaaaatg 31157204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 2e-44; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 66 - 209
Target Start/End: Original strand, 33285315 - 33285458
Alignment:
Q  66 gaaaatactgcacaacatacaaagccaatgatattattgttattgtcatggataatgggagatgagtctattcgtattgaatcacccttgctctgattct 165  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||  ||||||| ||||||||  ||||  ||||||||| |    
T  33285315 gaaaacactgcacaacatacaaagccaatgatattattgttattgtcatgcataataggagatctgtctattggtattgaactacccacgctctgattat 33285414  T
Q  166 taaaccaacttgatatttcacttcctggagtaacaatatgaatc 209  Q
    ||| |||||||| |||||||||||||||||||||||||||||||    
T  33285415 taatccaacttggtatttcacttcctggagtaacaatatgaatc 33285458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 384 - 538
Target Start/End: Original strand, 33358903 - 33359057
Alignment:
Q  384 ggaaaaggaagttgaggcaaagattccaacaatttgcaatgttgtaagtttaaacatacaagtttggaaaggtccctcaggctaggtaatgtcacaaact 483  Q
    |||||||||||||||||||||||||||||||| ||||||||||  || |||||| |||||||||| ||||| | |||||||||||||| ||||||||| |    
T  33358903 ggaaaaggaagttgaggcaaagattccaacaacttgcaatgttccaaatttaaatatacaagtttagaaagcttcctcaggctaggtagtgtcacaaaat 33359002  T
Q  484 tgtttccccctaaatttaactcttctaaccaatgtaaacatccaattgcatcggg 538  Q
     ||||||||||||||||||   ||||| ||||||||||||| |||||||||||||    
T  33359003 cgtttccccctaaatttaatatttctagccaatgtaaacattcaattgcatcggg 33359057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 384 - 535
Target Start/End: Original strand, 33057605 - 33057756
Alignment:
Q  384 ggaaaaggaagttgaggcaaagattccaacaatttgcaatgttgtaagtttaaacatacaagtttggaaaggtccctcaggctaggtaatgtcacaaact 483  Q
    ||||||||||||||||||||||||||||||||||||||||| |  || |||||| ||||||||||||| || | |||||||||||||||||||||||| |    
T  33057605 ggaaaaggaagttgaggcaaagattccaacaatttgcaatgctccaaatttaaatatacaagtttggatagcttcctcaggctaggtaatgtcacaaaat 33057704  T
Q  484 tgtttccccctaaatttaactcttctaaccaatgtaaacatccaattgcatc 535  Q
     ||||||| ||||||||||   ||||| ||||||||||||| ||||||||||    
T  33057705 cgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgcatc 33057756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 76 - 204
Target Start/End: Complemental strand, 28870446 - 28870318
Alignment:
Q  76 cacaacatacaaagccaatgatattattgttattgtcatggataatgggagatgagtctattcgtattgaatcacccttgctctgattcttaaaccaact 175  Q
    |||||||||||||||||||||||||||||||||||||||  ||||| ||||||  ||||||| |||||||| ||||| |||||||||| |||| ||||||    
T  28870446 cacaacatacaaagccaatgatattattgttattgtcatttataataggagattcgtctatttgtattgaaccacccatgctctgattgttaatccaact 28870347  T
Q  176 tgatatttcacttcctggagtaacaatat 204  Q
    || ||||||||||||||||||||||||||    
T  28870346 tggtatttcacttcctggagtaacaatat 28870318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 388 - 535
Target Start/End: Original strand, 33271865 - 33272012
Alignment:
Q  388 aaggaagttgaggcaaagattccaacaatttgcaatgttgtaagtttaaacatacaagtttggaaaggtccctcaggctaggtaatgtcacaaacttgtt 487  Q
    |||||||| ||||||||||||||||||| ||||||||||  || |||||| |||||||||||||||| | |||||||||||||| ||||||||| |||||    
T  33271865 aaggaagtcgaggcaaagattccaacaacttgcaatgttccaaatttaaatatacaagtttggaaagcttcctcaggctaggtagtgtcacaaaattgtt 33271964  T
Q  488 tccccctaaatttaactcttctaaccaatgtaaacatccaattgcatc 535  Q
    ||||||||||| |||   ||||| ||||||||||||| ||||||||||    
T  33271965 tccccctaaatctaatctttctagccaatgtaaacattcaattgcatc 33272012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 68 - 209
Target Start/End: Original strand, 33387877 - 33388018
Alignment:
Q  68 aaatactgcacaacatacaaagccaatgatattattgttattgtcatggataatgggagatgagtctattcgtattgaatcacccttgctctgattctta 167  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||  ||  ||||||| |||||||||||||| |||||||||| ||     
T  33387877 aaatactgcacaacatagaaagccaatgatattattgttattgtcatgcataataggcaatttgtctattagtattgaatcacccatgctctgattgttg 33387976  T
Q  168 aaccaacttgatatttcacttcctggagtaacaatatgaatc 209  Q
    | |||||| | |||||||||||||| ||||||||| ||||||    
T  33387977 atccaactcggtatttcacttcctgtagtaacaatttgaatc 33388018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 68 - 326
Target Start/End: Complemental strand, 33644825 - 33644570
Alignment:
Q  68 aaatactgcacaacatacaaagccaatgatattattgttattgtcatggataatgggagatgagtctattcgtattgaatcacccttgctctgattctta 167  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||  ||||||| ||||||||| ||||   || ||||| ||     
T  33644825 aaatactgcacaacatacaaatccaatgatattattgttattgtcatgcataataggagattcgtctatttgtattgaataacccacactttgattgttg 33644726  T
Q  168 aaccaacttgatatttcacttcctggagtaacaatatgaatcacatcataggagtcagggaaggattgtgggttcatccgaatgaattgtatcatcaatg 267  Q
    | |||||||| |||||||||||||||||| ||||| ||| ||  |||| || ||   ||| |||||||| ||||   | ||||||||||||||||| |||    
T  33644725 atccaacttggtatttcacttcctggagttacaatttgagtcctatcaaagtaggttgggtaggattgtaggtttgcctgaatgaattgtatcatccatg 33644626  T
Q  268 aaaaggcaatgcttctgcaataatgttcactctcgcacaatttaggacagttgaaaatg 326  Q
    |||| |  ||||| ||||   || |||| ||||| | |||||| | |||||||||||||    
T  33644625 aaaatgtcatgctcctgc---aacgttccctctcacccaattttgaacagttgaaaatg 33644570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 66 - 335
Target Start/End: Original strand, 33304205 - 33304471
Alignment:
Q  66 gaaaatactgcacaacatacaaagccaatgatattattgttattgtcatggataatgggagatgagtctattcgtattgaatcacccttgctctgattct 165  Q
    |||||||| |||||||||| |||||||||||||| ||||||||||||||| ||||| ||||||  ||||||| ||||||||||||||  ||||| ||| |    
T  33304205 gaaaataccgcacaacatagaaagccaatgatataattgttattgtcatgcataataggagatcggtctatttgtattgaatcacccacgctcttattgt 33304304  T
Q  166 taaaccaacttgatatttcacttcctggagtaacaatatgaatcacatcataggagtcagggaaggattgtgggttcatccgaatgaattgtatcatcaa 265  Q
    | | |||| ||| ||||||| |||||||||||||||| ||||||  |||| ||||   |||| ||||||||| |||   |  |||||||||| ||| | |    
T  33304305 tgatccaaattggtatttcatttcctggagtaacaatttgaatccaatcaaaggacgtagggtaggattgtgagtttgcctcaatgaattgtgtcaacca 33304404  T
Q  266 tgaaaaggcaatgcttctgcaataatgttcactctcgcacaatttaggacagttgaaaatgtataatcct 335  Q
    |||||| |  ||||| ||||   || |||| ||||| | |||||| ||||||||||||||| | ||||||    
T  33304405 tgaaaatgtcatgctactgc---aacgttccctctcacccaattttggacagttgaaaatgaacaatcct 33304471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 388 - 531
Target Start/End: Complemental strand, 33644508 - 33644365
Alignment:
Q  388 aaggaagttgaggcaaagattccaacaatttgcaatgttgtaagtttaaacatacaagtttggaaaggtccctcaggctaggtaatgtcacaaacttgtt 487  Q
    |||||||||||||||||||||||||||| ||||| ||||  || |||||| |||||||||||||||| | |||||||||||||| ||||||||| | |||    
T  33644508 aaggaagttgaggcaaagattccaacaacttgcagtgttccaaatttaaatatacaagtttggaaagcttcctcaggctaggtagtgtcacaaaatagtt 33644409  T
Q  488 tccccctaaatttaactcttctaaccaatgtaaacatccaattg 531  Q
    |||||||||||||||   ||||| | ||||||||||| ||||||    
T  33644408 tccccctaaatttaatctttctagcgaatgtaaacattcaattg 33644365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 384 - 534
Target Start/End: Original strand, 33285654 - 33285804
Alignment:
Q  384 ggaaaaggaagttgaggcaaagattccaacaatttgcaatgttgtaagtttaaacatacaagtttggaaaggtccctcaggctaggtaatgtcacaaact 483  Q
    |||||||||||||||||||||||||||||||| |||||||| |  || |||||| ||||||||||||| || |  ||||||||||||| ||||||||| |    
T  33285654 ggaaaaggaagttgaggcaaagattccaacaacttgcaatgctccaaatttaaatatacaagtttggacagctttctcaggctaggtagtgtcacaaaat 33285753  T
Q  484 tgtttccccctaaatttaactcttctaaccaatgtaaacatccaattgcat 534  Q
    ||||||||||||| |||||   ||||| ||||| ||||||| |||||||||    
T  33285754 tgtttccccctaagtttaatatttctagccaatataaacattcaattgcat 33285804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 388 - 531
Target Start/End: Original strand, 33262666 - 33262809
Alignment:
Q  388 aaggaagttgaggcaaagattccaacaatttgcaatgttgtaagtttaaacatacaagtttggaaaggtccctcaggctaggtaatgtcacaaacttgtt 487  Q
    ||||||||||||||||||||||||||||  ||||||| |  || |||||| |||||||||||||||| | |||||||||||||| ||||||||| |  ||    
T  33262666 aaggaagttgaggcaaagattccaacaacctgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaggctaggtagtgtcacaaaatcatt 33262765  T
Q  488 tccccctaaatttaactcttctaaccaatgtaaacatccaattg 531  Q
    |||||||||||||||   ||||| ||||||||| ||| ||||||    
T  33262766 tccccctaaatttaatctttctagccaatgtaagcattcaattg 33262809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 388 - 535
Target Start/End: Original strand, 33399094 - 33399241
Alignment:
Q  388 aaggaagttgaggcaaagattccaacaatttgcaatgttgtaagtttaaacatacaagtttggaaaggtccctcaggctaggtaatgtcacaaacttgtt 487  Q
    |||||||||||||||||||||||||||| ||||| ||||  || |||||| ||||||||| |||||| | |||||||||||||| ||||||||| |||||    
T  33399094 aaggaagttgaggcaaagattccaacaacttgcagtgttccaaatttaaatatacaagttcggaaagcttcctcaggctaggtagtgtcacaaaattgtt 33399193  T
Q  488 tccccctaaatttaactcttctaaccaatgtaaacatccaattgcatc 535  Q
    ||||  |||||||||   ||||| ||||||||||  | ||||||||||    
T  33399194 tccctttaaatttaatctttctagccaatgtaaatcttcaattgcatc 33399241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 384 - 551
Target Start/End: Original strand, 33410041 - 33410208
Alignment:
Q  384 ggaaaaggaagttgaggcaaagattccaacaatttgcaatgttgtaagtttaaacatacaagtttggaaaggtccctcaggctaggtaatgtcacaaact 483  Q
    |||||||||||||||||||||||||||||||| |||||||| || || | |||| || ||||||||||||| | ||||| |||||||| ||||||||| |    
T  33410041 ggaaaaggaagttgaggcaaagattccaacaacttgcaatgctgcaaatctaaatattcaagtttggaaagcttcctcaagctaggtagtgtcacaaaat 33410140  T
Q  484 tgtttccccctaaatttaactcttctaaccaatgtaaacatccaattgcatcggggagttggtttaga 551  Q
     ||||||| |||||| |||   ||||| | ||||||||| | |||||||||| || | ||||||||||    
T  33410141 agtttcccgctaaatataatctttctagcgaatgtaaaccttcaattgcatcaggaacttggtttaga 33410208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 66 - 207
Target Start/End: Original strand, 33262347 - 33262488
Alignment:
Q  66 gaaaatactgcacaacatacaaagccaatgatattattgttattgtcatggataatgggagatgagtctattcgtattgaatcacccttgctctgattct 165  Q
    ||||||||  ||||||||| |||||||||||||||||||||||| ||||| ||||| |||| |  ||||| | |||||||||||||| |||||||||| |    
T  33262347 gaaaatacaacacaacatagaaagccaatgatattattgttattatcatgcataataggagtttggtctactggtattgaatcacccatgctctgattgt 33262446  T
Q  166 taaaccaacttgatatttcacttcctggagtaacaatatgaa 207  Q
    | | |||||||| ||||||| |||||||| ||||||| ||||    
T  33262447 tgatccaacttggtatttcatttcctggactaacaatttgaa 33262488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 69 - 209
Target Start/End: Original strand, 9166485 - 9166625
Alignment:
Q  69 aatactgcacaacatacaaagccaatgatattattgttattgtcatggataatgggagatgagtctattcgtattgaatcacccttgctctgattcttaa 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |  ||||||| |||| ||| || ||  |||| |||| || |    
T  9166485 aatactgcacaacatacaaagccaatgatattattgttattgtcatgcataataggagttaggtctattggtatcgaaccatccacgctccgattgttga 9166584  T
Q  169 accaacttgatatttcacttcctggagtaacaatatgaatc 209  Q
     |||||||| ||||||| ||||||| |||||||| ||||||    
T  9166585 tccaacttggtatttcaattcctggcgtaacaatttgaatc 9166625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 388 - 535
Target Start/End: Original strand, 33304524 - 33304671
Alignment:
Q  388 aaggaagttgaggcaaagattccaacaatttgcaatgttgtaagtttaaacatacaagtttggaaaggtccctcaggctaggtaatgtcacaaacttgtt 487  Q
    ||||||||||||||||||||||||||||  ||||||| || || |||||| |||||||||||||||| | ||||||||||||||  |||||||| |||||    
T  33304524 aaggaagttgaggcaaagattccaacaacatgcaatgctgcaaatttaaatatacaagtttggaaagcttcctcaggctaggtagagtcacaaaattgtt 33304623  T
Q  488 tccccctaaatttaactcttctaaccaatgtaaacatccaattgcatc 535  Q
    |||| |||| |||||   ||||| | | | ||||||| ||||||||||    
T  33304624 tccctctaagtttaatctttctagcgagtataaacattcaattgcatc 33304671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 66 - 207
Target Start/End: Complemental strand, 31563111 - 31562970
Alignment:
Q  66 gaaaatactgcacaacatacaaagccaatgatattattgttattgtcatggataatgggagatgagtctattcgtattgaatcacccttgctctgattct 165  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||| |||   |||||  | |||||| |||||||||||||| |||| ||||| |    
T  31563111 gaaaatactgcacaacatacaaagccaatgatatcattgatattgtcatgcataggaggagagaactctattggtattgaatcacccatgctatgattgt 31563012  T
Q  166 taaaccaacttgatatttcacttcctggagtaacaatatgaa 207  Q
    | | |||| | | ||||||||||||||||  |||||||||||    
T  31563011 tgatccaattcggtatttcacttcctggaacaacaatatgaa 31562970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 388 - 559
Target Start/End: Complemental strand, 31562789 - 31562618
Alignment:
Q  388 aaggaagttgaggcaaagattccaacaatttgcaatgttgtaagtttaaacatacaagtttggaaaggtccctcaggctaggtaatgtcacaaacttgtt 487  Q
    |||||||||||||||||||||||||||| | |||||| |  || |||||| |||||||||||||||| | || || |||||||| ||||||||| | |||    
T  31562789 aaggaagttgaggcaaagattccaacaactcgcaatgctccaaatttaaatatacaagtttggaaagcttccacaagctaggtagtgtcacaaaatagtt 31562690  T
Q  488 tccccctaaatttaactcttctaaccaatgtaaacatccaattgcatcggggagttggtttagaccgcaaaa 559  Q
    |||||||||||||||   ||||| | |   ||||||| |||||||||| || | |||| |||||| ||||||    
T  31562689 tccccctaaatttaatctttctagcgagcttaaacattcaattgcatcaggcacttggcttagacggcaaaa 31562618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 388 - 551
Target Start/End: Original strand, 33388200 - 33388363
Alignment:
Q  388 aaggaagttgaggcaaagattccaacaatttgcaatgttgtaagtttaaacatacaagtttggaaaggtccctcaggctaggtaatgtcacaaacttgtt 487  Q
    ||||||||||||| ||||||| ||| || |||||||| |  || |||||| |||||||||||||||| | ||||| |||||||| ||||||||| | |||    
T  33388200 aaggaagttgaggaaaagatttcaagaacttgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaagctaggtagtgtcacaaaatcgtt 33388299  T
Q  488 tccccctaaatttaactcttctaaccaatgtaaacatccaattgcatcggggagttggtttaga 551  Q
    ||||||||||||||| | |||||   | ||||||||| |||||| |||||| | ||| ||||||    
T  33388300 tccccctaaatttaatttttctagtgagtgtaaacattcaattgaatcgggaacttgatttaga 33388363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 68 - 209
Target Start/End: Original strand, 33057301 - 33057442
Alignment:
Q  68 aaatactgcacaacatacaaagccaatgatattattgttattgtcatggataatgggagatgagtctattcgtattgaatcacccttgctctgattctta 167  Q
    |||| |||||||||||||||  |||||||||||||||| |||||||||  |||| ||||||  |||||||  |||||||| |||| | |||||||| ||     
T  33057301 aaatgctgcacaacatacaataccaatgatattattgtcattgtcatgcctaataggagatcggtctattgctattgaataacccatcctctgattgttg 33057400  T
Q  168 aaccaacttgatatttcacttcctggagtaacaatatgaatc 209  Q
    | |||||||| |||||||||||||||| |||| || ||||||    
T  33057401 atccaacttggtatttcacttcctggattaactatttgaatc 33057442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 388 - 502
Target Start/End: Complemental strand, 28870137 - 28870023
Alignment:
Q  388 aaggaagttgaggcaaagattccaacaatttgcaatgttgtaagtttaaacatacaagtttggaaaggtccctcaggctaggtaatgtcacaaacttgtt 487  Q
    |||||||||||||||||||||| ||||| |||||||| |  || |||||| || ||||||||||||| | |||||||||||| | ||||||||| | |||    
T  28870137 aaggaagttgaggcaaagattcaaacaacttgcaatgctccaaatttaaatattcaagtttggaaagcttcctcaggctaggcagtgtcacaaaatagtt 28870038  T
Q  488 tccccctaaatttaa 502  Q
    ||||| ||| |||||    
T  28870037 tccccgtaagtttaa 28870023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 76 - 207
Target Start/End: Original strand, 33409709 - 33409840
Alignment:
Q  76 cacaacatacaaagccaatgatattattgttattgtcatggataatgggagatgagtctattcgtattgaatcacccttgctctgattcttaaaccaact 175  Q
    |||||| |||||||||||| |||||||||||||||||||  ||||  ||||||   || |||  ||||||| |||||  ||||||||| || | ||||||    
T  33409709 cacaacttacaaagccaataatattattgttattgtcatttataacaggagattcatcaattgatattgaagcacccacgctctgattgttgatccaact 33409808  T
Q  176 tgatatttcacttcctggagtaacaatatgaa 207  Q
    || |||||||||||||||||| ||||| ||||    
T  33409809 tggtatttcacttcctggagttacaatttgaa 33409840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 386 - 531
Target Start/End: Original strand, 9166790 - 9166935
Alignment:
Q  386 aaaaggaagttgaggcaaagattccaacaatttgcaatgttgtaagtttaaacatacaagtttggaaaggtccctcaggctaggtaatgtcacaaacttg 485  Q
    ||||||||||||||||||| | ||||||||  ||||||| |  || |||||| |||||||||||||||| | ||||| |||||||| |||| |||| | |    
T  9166790 aaaaggaagttgaggcaaaaactccaacaacctgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaagctaggtagtgtcgcaaaatcg 9166889  T
Q  486 tttccccctaaatttaactcttctaaccaatgtaaacatccaattg 531  Q
     |||||||||| |||||   ||||| |||  |||||||| ||||||    
T  9166890 attccccctaagtttaatctttctagccaccgtaaacattcaattg 9166935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 33358654 - 33358716
Alignment:
Q  66 gaaaatactgcacaacatacaaagccaatgatattattgttattgtcatggataatgggagat 128  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||  |||| ||||||    
T  33358654 gaaaatactgcacaacatacaaaaccaatgacattattgttattgtcatgcctaataggagat 33358716  T

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Target: chr6; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 132 - 207
Target Start/End: Original strand, 33271582 - 33271657
Alignment:
Q  132 tctattcgtattgaatcacccttgctctgattcttaaaccaacttgatatttcacttcctggagtaacaatatgaa 207  Q
    |||||| |||| ||||||||| |||||||||| || | |||||||| |||||||||||||||||| | ||||||||    
T  33271582 tctattggtatcgaatcacccatgctctgattgttgatccaacttggtatttcacttcctggagttataatatgaa 33271657  T

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Target: chr6; HSP #26
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 202
Target Start/End: Original strand, 33398795 - 33398929
Alignment:
Q  68 aaatactgcacaacatacaaagccaatgatattattgttattgtcatggataatgggagatgagtctattcgtattgaatcacccttgctctgattctta 167  Q
    ||||||||||||||||||||||  |  | | | ||||||||| ||||| |||   ||||||  ||||||| ||||||||||||||   | |||||| ||     
T  33398795 aaatactgcacaacatacaaagtaatggctctgattgttattatcatgcatagcaggagataggtctatttgtattgaatcacccacacactgattgttg 33398894  T
Q  168 aaccaacttgatatttcacttcctggagtaacaat 202  Q
    | |||||||| |||||||||||||||| |||||||    
T  33398895 atccaacttggtatttcacttcctggaataacaat 33398929  T

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Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 374 - 561
Target Start/End: Complemental strand, 17440862 - 17440675
Alignment:
Q  374 gatagcagtgggaaaaggaagttgaggcaaagattccaacaatttgcaatgttgtaagtttaaacatacaagtttggaaaggtccctcaggctaggtaat 473  Q
    |||||| || |||||||||||||||||||||||||||||||| |||||||| || || |||||| |||||||||| ||||| | |||||||||||||| |    
T  17440862 gatagcggtaggaaaaggaagttgaggcaaagattccaacaacttgcaatgctgcaaatttaaatatacaagtttcgaaagcttcctcaggctaggtagt 17440763  T
Q  474 gtcacaaacttgtttccccctaaatttaactcttctaaccaatgtaaacatccaattgcatcggggagttggtttagaccgcaaaaac 561  Q
    ||| |||| |  |||||||||||||||||   ||||| ||||||||||||| |||||| ||| || | |||| |||||| ||||||||    
T  17440762 gtcgcaaaatcatttccccctaaatttaatctttctacccaatgtaaacattcaattgtatccggcacttggcttagacggcaaaaac 17440675  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 52 - 209
Target Start/End: Complemental strand, 17441163 - 17441012
Alignment:
Q  52 gatgaagtgccgtagaaaatactgcacaacatacaaagccaatgatattattgttattgtcatggataatgggagatgagtctattcgtattgaatcacc 151  Q
    ||||| ||||| | ||||||||||||||||||||||| ||||||||||||||||      ||||  |||| ||||||  |||||||| ||||||||||||    
T  17441163 gatgaggtgccatggaaaatactgcacaacatacaaaaccaatgatattattgt------catgcttaataggagattggtctattcttattgaatcacc 17441070  T
Q  152 cttgctctgattcttaaaccaacttgatatttcacttcctggagtaacaatatgaatc 209  Q
    |  ||||| ||| || | |||||||| |||||| ||||||||| ||||||||||||||    
T  17441069 cacgctcttattgttgatccaacttggtatttcgcttcctggactaacaatatgaatc 17441012  T

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Target: scaffold1408 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 67 - 207
Target Start/End: Original strand, 366 - 506
Alignment:
Q  67 aaaatactgcacaacatacaaagccaatgatattattgttattgtcatggataatgggagatgagtctattcgtattgaatcacccttgctctgattctt 166  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||| ||||  ||||||  ||||||| |||||||| ||||| |||||||||| ||    
T  366 aaaatactgcacaaaatacaaagccaatgatattattcttattgtcatgtataacaggagattcgtctattagtattgaaccacccatgctctgattgtt 465  T
Q  167 aaaccaacttgatatttcacttcctggagtaacaatatgaa 207  Q
     | ||| |||| |||||||||||||||||||||||| ||||    
T  466 gatccagcttggtatttcacttcctggagtaacaatttgaa 506  T

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Target: scaffold1408; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 384 - 535
Target Start/End: Original strand, 683 - 834
Alignment:
Q  384 ggaaaaggaagttgaggcaaagattccaacaatttgcaatgttgtaagtttaaacatacaagtttggaaaggtccctcaggctaggtaatgtcacaaact 483  Q
    |||||||||||||||||||| ||||||||||| |||||||| |  || |||||| |||||||| ||||||| | ||||| |||||||| ||||||||| |    
T  683 ggaaaaggaagttgaggcaacgattccaacaacttgcaatgctccaaatttaaatatacaagtctggaaagcttcctcatgctaggtagtgtcacaaaat 782  T
Q  484 tgtttccccctaaatttaactcttctaaccaatgtaaacatccaattgcatc 535  Q
    | |||||||||||||||||   ||||| || |||||||||| ||||||||||    
T  783 tatttccccctaaatttaatctttctagccgatgtaaacattcaattgcatc 834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 67 - 207
Target Start/End: Original strand, 6112 - 6252
Alignment:
Q  67 aaaatactgcacaacatacaaagccaatgatattattgttattgtcatggataatgggagatgagtctattcgtattgaatcacccttgctctgattctt 166  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||| ||||  ||||||  ||||||| |||||||| ||||| |||||||||| ||    
T  6112 aaaatactgcacaaaatacaaagccaatgatattattcttattgtcatgtataacaggagattcgtctattagtattgaaccacccatgctctgattgtt 6211  T
Q  167 aaaccaacttgatatttcacttcctggagtaacaatatgaa 207  Q
     | ||| |||| |||||||||||||||||||||||| ||||    
T  6212 gatccagcttggtatttcacttcctggagtaacaatttgaa 6252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 384 - 535
Target Start/End: Original strand, 6429 - 6580
Alignment:
Q  384 ggaaaaggaagttgaggcaaagattccaacaatttgcaatgttgtaagtttaaacatacaagtttggaaaggtccctcaggctaggtaatgtcacaaact 483  Q
    |||||||||||||||||||| ||||||||||| |||||||| |  || |||||| |||||||| ||||||| | ||||| |||||||| ||||||||| |    
T  6429 ggaaaaggaagttgaggcaacgattccaacaacttgcaatgctccaaatttaaatatacaagtctggaaagcttcctcatgctaggtagtgtcacaaaat 6528  T
Q  484 tgtttccccctaaatttaactcttctaaccaatgtaaacatccaattgcatc 535  Q
    | |||||||||||||||||   ||||| || |||||||||| ||||||||||    
T  6529 tatttccccctaaatttaatctttctagccgatgtaaacattcaattgcatc 6580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 389 - 502
Target Start/End: Complemental strand, 6785354 - 6785241
Alignment:
Q  389 aggaagttgaggcaaagattccaacaatttgcaatgttgtaagtttaaacatacaagtttggaaaggtccctcaggctaggtaatgtcacaaacttgttt 488  Q
    |||||| | ||||||| ||| |||||| ||||| || |  ||||||||| |||| ||||||||||| ||| |||||||||| ||||||||||| | ||||    
T  6785354 aggaagatcaggcaaatatttcaacaacttgcagtgatccaagtttaaatatacgagtttggaaagctccttcaggctaggcaatgtcacaaaatggttt 6785255  T
Q  489 ccccctaaatttaa 502  Q
    ||||||||||||||    
T  6785254 ccccctaaatttaa 6785241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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