View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17543_low_8 (Length: 612)
Name: NF17543_low_8
Description: NF17543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17543_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 464; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 13 - 516
Target Start/End: Complemental strand, 33731844 - 33731340
Alignment:
| Q |
13 |
aatatatagtgcctttaactctactttaataaactaggtatgatcccaccttaggtgcaagtggtaatataaaaagtaaaggaaaaattgatgtatccaa |
112 |
Q |
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| T |
33731844 |
aatatatagtgcctttaactctactttaataaactaggtatgatcccaccttaggtgcaagtggtaatataaaaagtaaaggaaaaattgatgtatccaa |
33731745 |
T |
|
| Q |
113 |
aatatgcactcataagacgacacatgaagctataaacctataattaattatgtatcatcatgaaataatacaaaacagtatgattaagtagtcactagtg |
212 |
Q |
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| T |
33731744 |
aatatgcacccataagacgacacatgaagctataaacctataattaattatgtatcatcatgaaataatacaaaacagtatgattaagtagtcactagtg |
33731645 |
T |
|
| Q |
213 |
gaagatatagaaaaaa-ttatctataataacattagacaagtaaaaataattattatnnnnnnntgcgagttgcaatttcaagaatcttgattagatctg |
311 |
Q |
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| T |
33731644 |
gaagatatagaaaaaaattatctataataacattagacaaataaaaataattattataaaaaaatgcgagttgcaatttcaagaatcttgattagatctg |
33731545 |
T |
|
| Q |
312 |
tgatgtggcttagggtggcagtttatggcacatgcatctatatattcataagattcactctgtcagtgtaatctcttaagacagtatcaaattttgttgt |
411 |
Q |
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| T |
33731544 |
tgatgtggcttagggtggcagtttatggcacatgcatctatataatcataagattcactctgtcagtgtaatctcttaagacagtatcaaattttgttgt |
33731445 |
T |
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| Q |
412 |
tttctgattcattgcaataaacaaaattgaacgcgaatctcgtggaaatatttggtatatgactacatatattaatgaatcaatttgattcttcacgatg |
511 |
Q |
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| T |
33731444 |
tttctgattcattgcaataaacaaaattgaacgcgaatctcgtggaaatatttggtatatgactacatatattaatgaatcaatttgattcttcacgatg |
33731345 |
T |
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| Q |
512 |
tgtca |
516 |
Q |
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||||| |
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| T |
33731344 |
tgtca |
33731340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 539 - 595
Target Start/End: Complemental strand, 33731340 - 33731286
Alignment:
| Q |
539 |
atgacatagtttaaattctctctgcgacgattgtaaaataatcattaatattattcg |
595 |
Q |
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||||||||||| |||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
33731340 |
atgacatagtt--aattctttatgcgacgattgtaaaataatcattaatattattcg |
33731286 |
T |
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