View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17543_low_9 (Length: 561)

Name: NF17543_low_9
Description: NF17543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17543_low_9
NF17543_low_9
[»] chr4 (31 HSPs)
chr4 (22-166)||(31364067-31364217)
chr4 (22-167)||(10715584-10715738)
chr4 (22-167)||(10929354-10929508)
chr4 (22-166)||(4552116-4552267)
chr4 (14-166)||(40969155-40969314)
chr4 (49-167)||(32005845-32005969)
chr4 (22-166)||(2017471-2017622)
chr4 (22-126)||(41972471-41972581)
chr4 (71-165)||(1585642-1585736)
chr4 (22-166)||(4728477-4728640)
chr4 (22-166)||(50383819-50383970)
chr4 (71-166)||(2576091-2576186)
chr4 (22-167)||(8901734-8901885)
chr4 (22-77)||(25237603-25237658)
chr4 (22-165)||(49744972-49745121)
chr4 (19-166)||(52373670-52373823)
chr4 (22-136)||(46645553-46645685)
chr4 (18-77)||(2521961-2522020)
chr4 (22-77)||(14044384-14044439)
chr4 (71-168)||(32828144-32828242)
chr4 (22-71)||(9694132-9694181)
chr4 (23-71)||(2576204-2576252)
chr4 (74-166)||(9003488-9003580)
chr4 (22-77)||(9003595-9003649)
chr4 (23-77)||(10058564-10058618)
chr4 (22-77)||(36947545-36947600)
chr4 (22-118)||(50099820-50099922)
chr4 (75-166)||(15034566-15034658)
chr4 (72-166)||(25237495-25237590)
chr4 (71-112)||(10058511-10058552)
chr4 (22-71)||(31929065-31929114)
[»] chr1 (27 HSPs)
chr1 (369-485)||(34058095-34058211)
chr1 (270-378)||(34058363-34058471)
chr1 (22-166)||(27584047-27584198)
chr1 (22-167)||(27460625-27460777)
chr1 (22-166)||(25007394-25007545)
chr1 (22-166)||(37154024-37154175)
chr1 (22-166)||(44305342-44305493)
chr1 (22-128)||(25011570-25011682)
chr1 (22-166)||(6331606-6331767)
chr1 (22-167)||(14727247-14727411)
chr1 (71-166)||(8239210-8239305)
chr1 (22-167)||(31844654-31844818)
chr1 (22-165)||(44238892-44239042)
chr1 (71-163)||(33469030-33469121)
chr1 (25-166)||(4773937-4774085)
chr1 (22-128)||(9527014-9527126)
chr1 (22-127)||(24646024-24646134)
chr1 (18-71)||(48940446-48940499)
chr1 (18-130)||(4642100-4642218)
chr1 (493-546)||(34057986-34058039)
chr1 (30-166)||(6802142-6802284)
chr1 (71-166)||(49898345-49898441)
chr1 (22-65)||(24745450-24745493)
chr1 (73-119)||(1428471-1428517)
chr1 (22-72)||(8239322-8239374)
chr1 (22-71)||(34459141-34459190)
chr1 (71-125)||(48940517-48940571)
[»] chr8 (12 HSPs)
chr8 (22-163)||(24964966-24965114)
chr8 (22-166)||(28927990-28928141)
chr8 (22-166)||(27321884-27322034)
chr8 (71-166)||(36406590-36406686)
chr8 (22-165)||(34282931-34283081)
chr8 (71-162)||(3384120-3384211)
chr8 (20-166)||(38214689-38214842)
chr8 (22-77)||(13243120-13243175)
chr8 (22-72)||(36406523-36406573)
chr8 (22-77)||(39431696-39431751)
chr8 (80-166)||(21138156-21138243)
chr8 (71-166)||(39431763-39431859)
[»] chr5 (40 HSPs)
chr5 (22-171)||(30248890-30249046)
chr5 (22-166)||(34443896-34444047)
chr5 (22-166)||(35468821-35468984)
chr5 (22-166)||(15675232-15675394)
chr5 (22-166)||(15503847-15503997)
chr5 (22-166)||(33006824-33006988)
chr5 (71-162)||(34846289-34846381)
chr5 (71-165)||(2476335-2476430)
chr5 (22-77)||(16667516-16667571)
chr5 (74-167)||(1672579-1672672)
chr5 (23-168)||(36234606-36234757)
chr5 (74-166)||(14832864-14832955)
chr5 (18-70)||(17192688-17192740)
chr5 (22-77)||(43228665-43228720)
chr5 (71-166)||(43228732-43228827)
chr5 (80-166)||(13694766-13694852)
chr5 (73-171)||(37779590-37779688)
chr5 (71-166)||(16567721-16567817)
chr5 (24-72)||(42989565-42989613)
chr5 (22-77)||(7162106-7162161)
chr5 (22-77)||(12267432-12267487)
chr5 (71-173)||(13942872-13942975)
chr5 (22-77)||(21069035-21069090)
chr5 (22-69)||(34846401-34846448)
chr5 (71-128)||(7162173-7162230)
chr5 (71-128)||(17192759-17192816)
chr5 (71-163)||(32953757-32953850)
chr5 (98-171)||(37607381-37607454)
chr5 (22-66)||(32953690-32953734)
chr5 (22-69)||(767316-767363)
chr5 (72-166)||(21068927-21069022)
chr5 (71-118)||(6900752-6900799)
chr5 (22-77)||(16567829-16567884)
chr5 (20-59)||(37607513-37607552)
chr5 (20-59)||(37779720-37779759)
chr5 (22-72)||(1672509-1672559)
chr5 (22-67)||(7159624-7159669)
chr5 (71-119)||(12267499-12267547)
chr5 (80-128)||(16667592-16667640)
chr5 (25-77)||(37654826-37654878)
[»] chr2 (18 HSPs)
chr2 (22-166)||(41114903-41115054)
chr2 (22-166)||(13203698-13203849)
chr2 (22-167)||(22572734-22572885)
chr2 (22-137)||(6799919-6800040)
chr2 (22-130)||(17148749-17148863)
chr2 (22-118)||(18299176-18299278)
chr2 (22-118)||(12000502-12000605)
chr2 (22-125)||(29257339-29257448)
chr2 (71-128)||(25562893-25562950)
chr2 (14-130)||(2475790-2475917)
chr2 (23-164)||(41010409-41010556)
chr2 (22-124)||(304158-304264)
chr2 (23-166)||(33909376-33909525)
chr2 (22-72)||(25562967-25563017)
chr2 (30-64)||(15651247-15651281)
chr2 (22-68)||(17249354-17249400)
chr2 (18-69)||(15429213-15429264)
chr2 (137-166)||(15651169-15651198)
[»] chr3 (23 HSPs)
chr3 (22-166)||(53651835-53651985)
chr3 (22-166)||(44047520-44047671)
chr3 (34-167)||(44625633-44625773)
chr3 (22-166)||(37516567-37516729)
chr3 (22-168)||(28311211-28311364)
chr3 (42-166)||(25391878-25392009)
chr3 (22-166)||(26371055-26371218)
chr3 (71-161)||(43700243-43700333)
chr3 (22-167)||(53987799-53987951)
chr3 (22-167)||(9600286-9600437)
chr3 (22-126)||(33179158-33179268)
chr3 (42-166)||(12909763-12909887)
chr3 (22-119)||(53068226-53068329)
chr3 (22-164)||(14461007-14461152)
chr3 (22-128)||(7500919-7501043)
chr3 (22-66)||(35077267-35077311)
chr3 (22-69)||(26278403-26278450)
chr3 (22-71)||(41218405-41218454)
chr3 (71-166)||(41218472-41218568)
chr3 (80-160)||(41358725-41358805)
chr3 (71-166)||(26278289-26278383)
chr3 (22-68)||(38239494-38239540)
chr3 (22-72)||(47511678-47511728)
[»] chr6 (16 HSPs)
chr6 (22-166)||(1781056-1781207)
chr6 (22-166)||(10397826-10397977)
chr6 (22-166)||(23663793-23663944)
chr6 (22-163)||(34249047-34249195)
chr6 (22-166)||(9695975-9696137)
chr6 (18-166)||(9046945-9047111)
chr6 (22-127)||(14938944-14939055)
chr6 (23-119)||(339314-339416)
chr6 (18-169)||(2836230-2836399)
chr6 (22-77)||(2941249-2941304)
chr6 (22-77)||(15122070-15122125)
chr6 (30-128)||(2960654-2960758)
chr6 (22-77)||(15528973-15529028)
chr6 (80-166)||(34188721-34188808)
chr6 (71-118)||(15528914-15528961)
chr6 (80-166)||(5582407-5582493)
[»] chr7 (26 HSPs)
chr7 (18-166)||(26722968-26723134)
chr7 (71-166)||(35300529-35300625)
chr7 (18-128)||(21932809-21932924)
chr7 (71-166)||(41759709-41759804)
chr7 (22-128)||(815019-815131)
chr7 (22-77)||(28694074-28694129)
chr7 (22-72)||(21688146-21688196)
chr7 (22-166)||(30852275-30852424)
chr7 (22-166)||(5991442-5991602)
chr7 (22-77)||(7873242-7873297)
chr7 (22-118)||(42439608-42439710)
chr7 (22-68)||(41759642-41759688)
chr7 (22-78)||(38129027-38129083)
chr7 (22-77)||(3012336-3012391)
chr7 (22-77)||(23704503-23704558)
chr7 (22-72)||(35300462-35300512)
chr7 (22-72)||(38991194-38991244)
chr7 (71-115)||(3012280-3012324)
chr7 (71-119)||(7873309-7873357)
chr7 (23-59)||(22206709-22206745)
chr7 (23-59)||(22227994-22228030)
chr7 (22-77)||(19377421-19377476)
chr7 (71-163)||(22206775-22206868)
chr7 (71-163)||(22227871-22227964)
chr7 (22-59)||(25688212-25688249)
chr7 (22-69)||(4843338-4843385)
[»] scaffold0075 (2 HSPs)
scaffold0075 (22-166)||(11456-11605)
scaffold0075 (22-119)||(6889-6992)
[»] scaffold0618 (1 HSPs)
scaffold0618 (22-125)||(1668-1777)
[»] scaffold0638 (2 HSPs)
scaffold0638 (22-77)||(4137-4192)
scaffold0638 (71-128)||(4068-4125)
[»] scaffold0021 (2 HSPs)
scaffold0021 (22-77)||(109333-109388)
scaffold0021 (74-130)||(109403-109459)


Alignment Details
Target: chr4 (Bit Score: 116; Significance: 9e-59; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 22 - 166
Target Start/End: Complemental strand, 31364217 - 31364067
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag------ctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||| |||||||||||||||||||    
T  31364217 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaggaaaaactaaaatttctagtaatggttggatttgctacaaagaaagttg 31364118  T
Q  116 gagccgagcctggacactagccgaggctagctgggggtggctccgcccctg 166  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  31364117 gagccgagcctgggcactagcccaggctagctgggggtggctccgcccctg 31364067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 22 - 167
Target Start/End: Complemental strand, 10715738 - 10715584
Alignment:
Q  22 caaaatctgcagga-aatgtgtttcctgcggaatttacacaaaaatccgcag------ctaaaatttctagtaatggttgggtttgct-acaaagaaagt 113  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||      |||||| ||||||||||||||||| ||||| |||||||||||    
T  10715738 caaaatctgcagggcaatgtgtttcctgcggaatttacacaaaaatccgcaggaaaagctaaaaattctagtaatggttgggcttgcttacaaagaaagt 10715639  T
Q  114 tggagccgagcctggacactagccgaggctagctg-ggggtggctccgcccctgt 167  Q
    ||||||||||||||| |||||||| |||||||||| |||||||||||||||||||    
T  10715638 tggagccgagcctgggcactagcccaggctagctggggggtggctccgcccctgt 10715584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 22 - 167
Target Start/End: Complemental strand, 10929508 - 10929354
Alignment:
Q  22 caaaatctgcagga-aatgtgtttcctgcggaatttacacaaaaatccgcag------ctaaaatttctagtaatggttgggtttgct-acaaagaaagt 113  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||      |||||| ||||||||||||||||| ||||| |||||||||||    
T  10929508 caaaatctgcagggcaatgtgtttcctgcggaatttacacaaaaatccgcaggaaaagctaaaaattctagtaatggttgggcttgcttacaaagaaagt 10929409  T
Q  114 tggagccgagcctggacactagccgaggctagctg-ggggtggctccgcccctgt 167  Q
    ||||||||||||||| |||||||| |||||||||| |||||||||||||||||||    
T  10929408 tggagccgagcctgggcactagcccaggctagctggggggtggctccgcccctgt 10929354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 22 - 166
Target Start/End: Complemental strand, 4552267 - 4552116
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag------ctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    |||||||||||||||||   |||||||||||||||||||| ||||||||||      |||||| ||||||||||||| ||| ||||||||||||||||||    
T  4552267 caaaatctgcaggaaatacatttcctgcggaatttacacacaaatccgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttg 4552168  T
Q  116 gagccgagcctggacactagccgaggctagctg-ggggtggctccgcccctg 166  Q
    |||| |||||||| |||||||| |||||||||| |||| |||||||||||||    
T  4552167 gagctgagcctgggcactagcccaggctagctgggggggggctccgcccctg 4552116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 14 - 166
Target Start/End: Complemental strand, 40969314 - 40969155
Alignment:
Q  14 atcattgacaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgc------agctaaaatttctagtaatggttgggtttgctacaaa 107  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||      |||||||| ||||  ||||||||||  ||||||||||    
T  40969314 atcattgacaaaatctgcagaaaatgtgtttcctgcagaatttacacaaaaatccgcaggaaaagctaaaaattctcataatggttggacttgctacaaa 40969215  T
Q  108 gaaagttggagccgagcctggacactagccgaggctagctggggg-tggctccgcccctg 166  Q
    |||||||| ||| |||||||  |||||||| |||||||||||||| | ||||||||||||    
T  40969214 gaaagttgaagctgagcctgagcactagcccaggctagctgggggatagctccgcccctg 40969155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 49 - 167
Target Start/End: Complemental strand, 32005969 - 32005845
Alignment:
Q  49 cggaatttacacaaaaatccgcag------ctaaaatttctagtaatggttgggtttgctacaaagaaagttggagccgagcctggacactagccgaggc 142  Q
    ||||||||||||||||||||||||      |||||| ||||| ||||||| ||| |||||||||||||||||||||| |||||||| |||||||| ||||    
T  32005969 cggaatttacacaaaaatccgcaggaaaagctaaaaattctaataatggtagggcttgctacaaagaaagttggagctgagcctgggcactagcccaggc 32005870  T
Q  143 tagctgggggtggctccgcccctgt 167  Q
    |||||||||||||||||||||||||    
T  32005869 tagctgggggtggctccgcccctgt 32005845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 22 - 166
Target Start/End: Original strand, 2017471 - 2017622
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag------ctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    |||||||||| ||||||   |||||||||||||||||||||||||||||||      |||||| ||||||||||||| | | ||||||||||||||||||    
T  2017471 caaaatctgcgggaaatacatttcctgcggaatttacacaaaaatccgcaggaaaagctaaaaattctagtaatggtagagcttgctacaaagaaagttg 2017570  T
Q  116 gagccgagcctggacactagccgaggctagct-gggggtggctccgcccctg 166  Q
    ||||  ||||||| |||||||| ||||||||| |||||||||||||||||||    
T  2017571 gagctaagcctgggcactagcccaggctagctggggggtggctccgcccctg 2017622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 41972471 - 41972581
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgc------agctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||      |||||||| |||||||||||||| || ||||||||||||||||||    
T  41972471 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaggaaaagctaaaagttctagtaatggttcggcttgctacaaagaaagttg 41972570  T
Q  116 gagccgagcct 126  Q
    |||| ||||||    
T  41972571 gagctgagcct 41972581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 71 - 165
Target Start/End: Complemental strand, 1585736 - 1585642
Alignment:
Q  71 agctaaaatttctagtaatggttgggtttgctacaaagaaagttggagccgagcctggacactagccgaggctagctgggggtggctccgcccct 165  Q
    |||||||| ||||||||||||| ||| |||||||||||||||||| ||| |||||||| |||||||| |||||||||||||||||||||||||||    
T  1585736 agctaaaaattctagtaatggtagggcttgctacaaagaaagttgaagctgagcctgggcactagcccaggctagctgggggtggctccgcccct 1585642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 22 - 166
Target Start/End: Complemental strand, 4728640 - 4728477
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag------------------ctaaaatttctagtaatggttgggtttgcta 103  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||                  |||||| |||||||||||||| || ||||||    
T  4728640 caaaatctgcaggaaatgtgtttcctgcggaatttactcaaaaatccgcaggtaaatccgcaggaaaagctaaaaattctagtaatggtttggcttgcta 4728541  T
Q  104 caaagaaagttggagccgagcctggacactagccgaggctagctg-ggggtggctccgcccctg 166  Q
    |||||||||||||||||||| |||| |||||||| | |||||||| ||||||||||||||||||    
T  4728540 caaagaaagttggagccgagtctgggcactagcccaagctagctggggggtggctccgcccctg 4728477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 22 - 166
Target Start/End: Complemental strand, 50383970 - 50383819
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag------ctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    ||||||||||||||||||||||||||||  ||||||| |||| ||||||||      |||||| |||||||||||| |||| ||||||||||||||||||    
T  50383970 caaaatctgcaggaaatgtgtttcctgcaaaatttacgcaaacatccgcaggaaaagctaaaagttctagtaatggctgggcttgctacaaagaaagttg 50383871  T
Q  116 gagccgagcctggacactagccgaggctagct-gggggtggctccgcccctg 166  Q
    |||| |||||||| |    ||| ||||||||| |||||||||||||||||||    
T  50383870 gagctgagcctgggccagtgcccaggctagctggggggtggctccgcccctg 50383819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 71 - 166
Target Start/End: Complemental strand, 2576186 - 2576091
Alignment:
Q  71 agctaaaatttctagtaatggttgggtttgctacaaagaaagttggagccgagcctggacactagccgaggctagctgggggtggctccgcccctg 166  Q
    |||||||| |||| |||||||||||| |||||||||||||||||||||| |||||||| |||||||| || |||||||||| ||||||||||||||    
T  2576186 agctaaaaattcttgtaatggttgggcttgctacaaagaaagttggagctgagcctgggcactagcccagactagctggggttggctccgcccctg 2576091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 22 - 167
Target Start/End: Complemental strand, 8901885 - 8901734
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgc------agctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| ||      || ||||| |||||  ||||| |||| || |||||||||||||||    
T  8901885 caaaatctgcaggaaatgtgtttcctgcggagtttacacaaaaatctgcaggaaaagttaaaagttctaaaaatggctgggctttctacaaagaaagttg 8901786  T
Q  116 gagccgagcctggacactagccgaggctagctgggggtggctccgcccctgt 167  Q
    |||| |||||||| |    ||| || | |||||| |||||||||||||||||    
T  8901785 gagctgagcctgggctagtgcccagacaagctggcggtggctccgcccctgt 8901734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 25237658 - 25237603
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcagctaaa 77  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  25237658 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaattccgcaggtaaa 25237603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 165
Target Start/End: Complemental strand, 49745121 - 49744972
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgc------agctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||  |      || ||||| |||||||||||| | |  ||| || |||||||||||    
T  49745121 caaaatctgcagaaaatgtgtttcctacggaatttacacaaaaatctacaggaaaaggtaaaacttctagtaatggctagacttgttataaagaaagttg 49745022  T
Q  116 gagccgagcctggacactagccgaggctagctgggggtggctccgcccct 165  Q
    |||| ||||||||||    ||| || |||||||||| |||||||||||||    
T  49745021 gagctgagcctggactagtgcccagactagctggggttggctccgcccct 49744972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 166
Target Start/End: Complemental strand, 52373823 - 52373670
Alignment:
Q  19 tgacaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgc------agctaaaatttctagtaatggttgggtttgctacaaagaaag 112  Q
    |||||||||||||| |||||  |||| |||||||||||||||||||||| ||      || ||||| |||||||||||  || | || ||| ||||||||    
T  52373823 tgacaaaatctgcaagaaatacgttttctgcggaatttacacaaaaatctgcagaaaaagttaaaagttctagtaatgactgagcttactataaagaaag 52373724  T
Q  113 ttggagccgagcctggacactagccgaggctagctgggggtggctccgcccctg 166  Q
    ||||||| |||||||| |    ||| || |||||||||||||||||||||||||    
T  52373723 ttggagctgagcctgggctagtgcccagactagctgggggtggctccgcccctg 52373670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 46645685 - 46645553
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgc------------------agctaaaatttctagtaatggttgggtttgcta 103  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||                  |||||||| ||||||||||||||||| ||||||    
T  46645685 caaaatctgcatgaaatgtgtttcctgcagaatttacacaaaaatccgcaggtaaatccgcagaaaaagctaaaaattctagtaatggttgggcttgcta 46645586  T
Q  104 caaagaaagttggagccgagcctggacactagc 136  Q
    ||||| |||||||||| |||||||| |||||||    
T  46645585 caaaggaagttggagctgagcctgggcactagc 46645553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 2521961 - 2522020
Alignment:
Q  18 ttgacaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcagctaaa 77  Q
    |||| ||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||    
T  2521961 ttgataaaatctacaggaaatgtgtttcctgcggactttacacaaaaatccgcaggtaaa 2522020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 14044439 - 14044384
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcagctaaa 77  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||    
T  14044439 caaaatctgcaggaaatgtgtttcctgcggaatttacataaaaattcgcaggtaaa 14044384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 71 - 168
Target Start/End: Complemental strand, 32828242 - 32828144
Alignment:
Q  71 agctaaaatttctagtaatggttgggtttgctacaaagaaagttggagccgagcctggacactagccgaggctagctgggg-gtggctccgcccctgtg 168  Q
    |||||||| ||||||||||||||||| || ||||||||||| ||||||| |||||||| |    ||| |||||||||||||  ||||||||||||||||    
T  32828242 agctaaaagttctagtaatggttgggattactacaaagaaaattggagctgagcctgggctagtgcccaggctagctggggtttggctccgcccctgtg 32828144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 9694181 - 9694132
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgca 71  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  9694181 caaaatctgcaggaaatgtgtttcctgcggaatttacataaaattccgca 9694132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 2576252 - 2576204
Alignment:
Q  23 aaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgca 71  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  2576252 aaaatctgcaggaaatgtgtttcctgcggaatttatacaaaaattcgca 2576204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 74 - 166
Target Start/End: Complemental strand, 9003580 - 9003488
Alignment:
Q  74 taaaatttctagtaatggttgggtttgctacaaagaaagttggagccgagcctggacactagccgaggctagctgggggtggctccgcccctg 166  Q
    ||||| |||| ||||||  |||| |||||||||||||| ||||||| ||||||||||    ||| ||||||||||||||||||| ||||||||    
T  9003580 taaaagttcttgtaatgactgggcttgctacaaagaaaattggagctgagcctggactagtgcctaggctagctgggggtggctacgcccctg 9003488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 9003649 - 9003595
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcagctaaa 77  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||    
T  9003649 caaaatctgcaggaaatgtgtttcctgcggaatttaca-taaaatccgcaggtaaa 9003595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 10058618 - 10058564
Alignment:
Q  23 aaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcagctaaa 77  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||| ||| ||||    
T  10058618 aaaatctgctggaaatgtgtttcctgcggaatttacacaaaattccccaggtaaa 10058564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 36947600 - 36947545
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcagctaaa 77  Q
    ||||||| ||||||||| |||||||||| ||||||| |||||||||||||| ||||    
T  36947600 caaaatccgcaggaaatatgtttcctgcagaatttatacaaaaatccgcaggtaaa 36947545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 118
Target Start/End: Complemental strand, 50099922 - 50099820
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgc------agctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    |||||| ||||| |||||  |||||| ||||||||||||||||||||||      ||||||||  ||||||||||||||   || |||||||||||||||    
T  50099922 caaaatttgcagaaaatgaatttcctacggaatttacacaaaaatccgcagaaaaagctaaaagctctagtaatggttgaacttactacaaagaaagttg 50099823  T
Q  116 gag 118  Q
    |||    
T  50099822 gag 50099820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 166
Target Start/End: Original strand, 15034566 - 15034658
Alignment:
Q  75 aaaatttctagtaatggttgggtttgctacaaagaaagttggagccgagcctggacactagccgaggctagct-gggggtggctccgcccctg 166  Q
    |||| ||||||||||||||||| ||| |||||||||||||| ||| |||| ||| |    ||| ||||||| | |||||||||||||||||||    
T  15034566 aaaagttctagtaatggttgggcttgttacaaagaaagttgaagctgagcttgggctagtgcccaggctagttggggggtggctccgcccctg 15034658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 166
Target Start/End: Complemental strand, 25237590 - 25237495
Alignment:
Q  72 gctaaaatttctagtaatggttgggtttgctacaaagaaagttggagccgagcctggacactagccgaggctagct-gggggtggctccgcccctg 166  Q
    ||||||| |||||||||||  |||  || ||||||||||||||||||| |||||||| |    ||  ||||||||| |||||||||||||||||||    
T  25237590 gctaaaagttctagtaatgactggacttactacaaagaaagttggagctgagcctgggctagtgctcaggctagctggggggtggctccgcccctg 25237495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 10058552 - 10058511
Alignment:
Q  71 agctaaaatttctagtaatggttgggtttgctacaaagaaag 112  Q
    |||||||| |||| |||||||||||| |||||||||||||||    
T  10058552 agctaaaaattctcgtaatggttgggcttgctacaaagaaag 10058511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 31929065 - 31929114
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgca 71  Q
    |||||| ||||||||||||||||| ||| |||||||||  ||||||||||    
T  31929065 caaaatttgcaggaaatgtgtttcttgcagaatttacaataaaatccgca 31929114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 6e-57; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 369 - 485
Target Start/End: Complemental strand, 34058211 - 34058095
Alignment:
Q  369 tttttgttagcttctattctcgctccaaaaatagatgtgtaattaatgttatacagttaatgtagattttgccgatatgtttttaatattgtcccatttt 468  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  34058211 tttttgttagcttctattctcgctccaaaaatagatgtgtaattaatgttatacagttaatgtagattttgccgatatatttttaatattgtcccatttt 34058112  T
Q  469 ccttttaccttgctttt 485  Q
    |||||||||||||||||    
T  34058111 ccttttaccttgctttt 34058095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 270 - 378
Target Start/End: Complemental strand, 34058471 - 34058363
Alignment:
Q  270 aaggaaagaggggagaaaacgtgaaggaagtattggagatgagggagagaaggaaggtgaacgaagtaagaataaaggaaagagaaaatagcaattctgt 369  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  34058471 aaggaaagaggagagaaaacgtgaaggaagtattggagatgagggagagaaggaaggtgaacgaagtaagaataaaggaaagagaaaatagcaattctct 34058372  T
Q  370 ttttgttag 378  Q
    |||||||||    
T  34058371 ttttgttag 34058363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 22 - 166
Target Start/End: Original strand, 27584047 - 27584198
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag------ctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||      |||||| |||||||||||||| || ||||||||||||||||||    
T  27584047 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaggaaaagctaaaaattctagtaatggtttggcttgctacaaagaaagttg 27584146  T
Q  116 gagccgagcctggacactagccgaggctagct-gggggtggctccgcccctg 166  Q
    ||||||||||||| | |||||| ||||||||| |||||||||||||||||||    
T  27584147 gagccgagcctgggcgctagcccaggctagctggggggtggctccgcccctg 27584198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 22 - 167
Target Start/End: Complemental strand, 27460777 - 27460625
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgca------gctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||      ||||||| ||||||||||||||||| ||||||||||||||||||    
T  27460777 caaaatctgcaggaaatgtgtttccttcggaatttacacaaaaatccgcaagaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttg 27460678  T
Q  116 gagccgagcctggacactagccgaggctagct-gggggtggctccgcccctgt 167  Q
    |||| |||||||| |||||||| | ||||||| ||||||||||||||||||||    
T  27460677 gagctgagcctgggcactagcccatgctagctagggggtggctccgcccctgt 27460625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 22 - 166
Target Start/End: Complemental strand, 25007545 - 25007394
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag------ctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    |||||||||||||||||   |||| ||||||||||||||||||||||||||      |||||| ||||||||||||| ||| ||||||||||||||||||    
T  25007545 caaaatctgcaggaaatacatttcttgcggaatttacacaaaaatccgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttg 25007446  T
Q  116 gagccgagcctggacactagccgaggctagctg-ggggtggctccgcccctg 166  Q
    |||| |||||||| || ||||| |||||||||| ||||||||||||||||||    
T  25007445 gagctgagcctgggcattagcccaggctagctggggggtggctccgcccctg 25007394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 22 - 166
Target Start/End: Original strand, 37154024 - 37154175
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag------ctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    |||||||||||||||||   |||||||||||||||||||||||||||||||      |||||| ||||||||||||| | | || |||||||||||||||    
T  37154024 caaaatctgcaggaaatacatttcctgcggaatttacacaaaaatccgcaggaaaagctaaaaattctagtaatggtagagcttcctacaaagaaagttg 37154123  T
Q  116 gagccgagcctggacactagccgaggctagct-gggggtggctccgcccctg 166  Q
    |||| |||||||| |||||||| ||||||||| |||||||||||||||||||    
T  37154124 gagctgagcctgggcactagcccaggctagctggggggtggctccgcccctg 37154175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 22 - 166
Target Start/End: Complemental strand, 44305493 - 44305342
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag------ctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    |||||||||||||||||   |||||||||||||||||||||||||||||||      |||||| |||||||||| || ||| || |||||||||||||||    
T  44305493 caaaatctgcaggaaatacatttcctgcggaatttacacaaaaatccgcaggaaaagctaaaaattctagtaattgtagggcttcctacaaagaaagttg 44305394  T
Q  116 gagccgagcctggacactagccgaggctagctg-ggggtggctccgcccctg 166  Q
    |||| |||||||| |||||||| |||||||||| ||||||||||||||||||    
T  44305393 gagctgagcctgggcactagcccaggctagctggggggtggctccgcccctg 44305342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 25011570 - 25011682
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgc------agctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||      |||||||| ||||||||||||||||| ||||||||||||||||||    
T  25011570 caaaatctgcagaaaatgtgtttcctgcggaatttacacaaaaatccgcaggaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttg 25011669  T
Q  116 gagccgagcctgg 128  Q
    |||| ||||||||    
T  25011670 gagctgagcctgg 25011682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 22 - 166
Target Start/End: Complemental strand, 6331767 - 6331606
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccg------------------cagctaaaatttctagtaatggttgggtttgcta 103  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||                   |||||||||||||||||||||||| ||||||||    
T  6331767 caaaatctgtaggaaatgtgtttcctgcggaatttacacaaaaatccggaggtaaacccgcaggaaaagctaaaatttctagtaatggttgagtttgcta 6331668  T
Q  104 caaagaaagttggagccgagcctggacactagccgaggctagctgggggtggctccgcccctg 166  Q
    || |||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||    
T  6331667 catagaaagttggagccgagcctgggcactagcccaggctagct-ggggtggctccgcccctg 6331606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 22 - 167
Target Start/End: Complemental strand, 14727411 - 14727247
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag------------------ctaaaatttctagtaatggttgggtttgcta 103  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||                  |||||| ||||||||||||||||  ||||||    
T  14727411 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaactccgcaggtaaatccgcaggaaaagctaaaaattctagtaatggttggacttgcta 14727312  T
Q  104 caaagaaagttggagccgagcctggacactagccgaggctagc-tgggggtggctccgcccctgt 167  Q
    |||||||||||||||| |||||||| |||||||| |||||||| |||||||||||||||||||||    
T  14727311 caaagaaagttggagctgagcctgggcactagcccaggctagcttgggggtggctccgcccctgt 14727247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 71 - 166
Target Start/End: Complemental strand, 8239305 - 8239210
Alignment:
Q  71 agctaaaatttctagtaatggttgggtttgctacaaagaaagttggagccgagcctggacactagccgaggctagctgggggtggctccgcccctg 166  Q
    |||||||| ||||||||||||| ||| || ||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||    
T  8239305 agctaaaaattctagtaatggtagggattactacaaagaaagttggagctgagcctgggcactagcccaggctagctgggggtggctccgcccctg 8239210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 22 - 167
Target Start/End: Original strand, 31844654 - 31844818
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag------------------ctaaaatttctagtaatggttgggtttgcta 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||                  |||||||||||||||||||||||||||||||    
T  31844654 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatctgcaggtaaatccgtaggaaaagctaaaatttctagtaatggttgggtttgcta 31844753  T
Q  104 caaagaaagttggagccgagcctggacactagccgaggctagct-gggggtggctccgcccctgt 167  Q
     ||||||||||||||  |||||||| ||||||   ||||||||| ||||||||||||||||||||    
T  31844754 gaaagaaagttggagttgagcctgggcactagatcaggctagctggggggtggctccgcccctgt 31844818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 165
Target Start/End: Original strand, 44238892 - 44239042
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaa-tccgca------gctaaaatttctagtaatggttgggtttgctacaaagaaagtt 114  Q
    |||||||| || |||||||||||||||| ||||||||| ||||| ||||||      |||||||||||||||||||| |||| || ||||||||||||||    
T  44238892 caaaatctacaagaaatgtgtttcctgcagaatttacaaaaaaaatccgcaagaaaagctaaaatttctagtaatggctgggctttctacaaagaaagtt 44238991  T
Q  115 ggagccgagcctggacactagccgaggctagctgggggtggctccgcccct 165  Q
    ||||| |||||||| |    ||| || ||||||||||||||||||||||||    
T  44238992 ggagctgagcctgggctagtgcccagactagctgggggtggctccgcccct 44239042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 71 - 163
Target Start/End: Original strand, 33469030 - 33469121
Alignment:
Q  71 agctaaaatttctagtaatggttgggtttgctacaaagaaagttggagccgagcctggacactagccgaggctagctgggggtggctccgccc 163  Q
    ||||||||||||||||||||||||  ||||||| ||||||||||||||| |||||| | |||||||| ||||||||| |||||||||||||||    
T  33469030 agctaaaatttctagtaatggttgaatttgctataaagaaagttggagctgagcctaggcactagcccaggctagct-ggggtggctccgccc 33469121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 25 - 166
Target Start/End: Complemental strand, 4774085 - 4773937
Alignment:
Q  25 aatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgc------agctaaaatttctagtaatggttgggtttgctacaaagaaagttggag 118  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||      |||||||| |||||||||||| |||| |||||||||| ||| ||||||    
T  4774085 aatctgcaggaaatgtgtttcctgcggaatttacataaatatccgcaggaaaagctaaaagttctagtaatggctgggcttgctacaaaaaaaattggag 4773986  T
Q  119 ccgagcctggacactagccgaggctagct-gggggtggctccgcccctg 166  Q
      ||| |||| |    ||| ||||||||| |||||||||||||||||||    
T  4773985 ttgagtctgggctagtgcccaggctagctggggggtggctccgcccctg 4773937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 9527126 - 9527014
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag------ctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    |||||||||||||| |||||||||||| | ||||||||| |||||||||||      |||||| |||||||||||| |||| ||||||||||||||||||    
T  9527126 caaaatctgcaggagatgtgtttcctgtgaaatttacaccaaaatccgcaggaaaagctaaaagttctagtaatggctgggcttgctacaaagaaagttg 9527027  T
Q  116 gagccgagcctgg 128  Q
    |||| | ||||||    
T  9527026 gagctgggcctgg 9527014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 24646134 - 24646024
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgc------agctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||| |      |||||||| ||||||||||||||| | ||||||||||||||||||    
T  24646134 caaaatctgcaggaaatgtgtttcctacggaatgtacacaaaaatccacaggaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttg 24646036  T
Q  116 gagccgagcctg 127  Q
    |||  |||||||    
T  24646035 gagttgagcctg 24646024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 48940446 - 48940499
Alignment:
Q  18 ttgacaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgca 71  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  48940446 ttgacaaaatctgcatgaaatgtgtttcctgcggaatttacacaaaaatccgca 48940499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 4642100 - 4642218
Alignment:
Q  18 ttgacaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgc------agctaaaatttctagtaatggttgggtttgctacaaagaaa 111  Q
    ||||||||||||||| ||||||| ||||||| | |||||||| ||||||||||      |||||||| |||||||||||| ||   ||||||||||||||    
T  4642100 ttgacaaaatctgcaagaaatgtatttcctgtgaaatttacataaaaatccgcaggaaaagctaaaagttctagtaatggctgaacttgctacaaagaaa 4642199  T
Q  112 gttggagccgagcctggac 130  Q
    || ||||| ||||||||||    
T  4642200 gtcggagctgagcctggac 4642218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 493 - 546
Target Start/End: Complemental strand, 34058039 - 34057986
Alignment:
Q  493 tacatggtggagagactttggaaggcgagtattttatgatacaacactatgaca 546  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  34058039 tacatggtggagagactttgaagggcgagtattttatgatacaacactatgaca 34057986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 30 - 166
Target Start/End: Original strand, 6802142 - 6802284
Alignment:
Q  30 gcaggaaatgtgtttcctgcggaatttacacaaaaatccgc------agctaaaatttctagtaatggttgggtttgctacaaagaaagttggagccgag 123  Q
    ||||||||||||||||||| |||||||||| ||||||||||      ||| | || |||||||||||| || | |||||||||||||||| | ||  |||    
T  6802142 gcaggaaatgtgtttcctgtggaatttacagaaaaatccgcaggaaaagcgagaagttctagtaatggctgagcttgctacaaagaaagtagaagttgag 6802241  T
Q  124 cctggacactagccgaggctagctgggggtggctccgcccctg 166  Q
    ||||| |    ||| |||||||||||||||||||| |||||||    
T  6802242 cctgggctagtgcccaggctagctgggggtggctctgcccctg 6802284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 166
Target Start/End: Complemental strand, 49898441 - 49898345
Alignment:
Q  71 agctaaaatttctagtaatggttgggtttgctacaaagaaagttggagccgagcctggacactagccgaggctagct-gggggtggctccgcccctg 166  Q
    |||||||| |||||||||||| ||   ||| |||||||||||||||||| |||||||| |    ||| ||||||||| |||||||||||||||||||    
T  49898441 agctaaaacttctagtaatggctgaacttgttacaaagaaagttggagctgagcctgggctagtgcccaggctagctggggggtggctccgcccctg 49898345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 24745493 - 24745450
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaa 65  Q
    |||||||||||| ||||||||||||||| |||||||||||||||    
T  24745493 caaaatctgcagaaaatgtgtttcctgcagaatttacacaaaaa 24745450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 119
Target Start/End: Original strand, 1428471 - 1428517
Alignment:
Q  73 ctaaaatttctagtaatggttgggtttgctacaaagaaagttggagc 119  Q
    |||||| ||||||||||||| ||| ||||||||||||||||||||||    
T  1428471 ctaaaaattctagtaatggtagggcttgctacaaagaaagttggagc 1428517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 8239374 - 8239322
Alignment:
Q  22 caaaatctgcaggaaatgtgt--ttcctgcggaatttacacaaaaatccgcag 72  Q
    ||||||||||||||||| | |  ||||||||||||||||||||||||||||||    
T  8239374 caaaatctgcaggaaatatatatttcctgcggaatttacacaaaaatccgcag 8239322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 34459190 - 34459141
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgca 71  Q
    |||||||||||||||||||||||||| ||||| || ||||| ||||||||    
T  34459190 caaaatctgcaggaaatgtgtttcctacggaaattccacaacaatccgca 34459141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 48940517 - 48940571
Alignment:
Q  71 agctaaaatttctagtaatggttgggtttgctacaaagaaagttggagccgagcc 125  Q
    |||||||| |||||||||||| | || ||||||||||||| |||||||| |||||    
T  48940517 agctaaaagttctagtaatggcttggcttgctacaaagaatgttggagctgagcc 48940571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 2e-50; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 22 - 163
Target Start/End: Complemental strand, 24965114 - 24964966
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag------ctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||      |||||| ||||||||||||||||| ||||||||||||||||||    
T  24965114 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaggaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttg 24965015  T
Q  116 gagccgagcctggacactagccgaggctagctggg-ggtggctccgccc 163  Q
    ||||||||||||| |||||||| |||||||||||| |||||||||||||    
T  24965014 gagccgagcctgggcactagcccaggctagctgggtggtggctccgccc 24964966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 22 - 166
Target Start/End: Complemental strand, 28928141 - 28927990
Alignment:
Q  22 caaaatctgcagg-aaatgtgtttcctgcggaatttacacaaaaatccgcag------ctaaaatttctagtaatggttgggtttgctacaaagaaagtt 114  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||||||      |||||| |||||||||||||| || |||||||||||||||||    
T  28928141 caaaatctgcagggaaatgtgtttcctgcggaatttacacaaaactccgcaggaaaagctaaaaattctagtaatggttaggcttgctacaaagaaagtt 28928042  T
Q  115 ggagccgagcctggacactagccgaggctagctgggggtggctccgcccctg 166  Q
    |||||||||||||| |||||||| ||  ||||||||||||||||||||||||    
T  28928041 ggagccgagcctgggcactagcccagaatagctgggggtggctccgcccctg 28927990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 22 - 166
Target Start/End: Original strand, 27321884 - 27322034
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag------ctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||      |||||| || ||||||||| |||| |||||||||||||| |||    
T  27321884 caaaatttgcaggaaatgtgtttcctgcggaatttacataaaaatccgcaggaaaaactaaaagttttagtaatggctgggcttgctacaaagaaaattg 27321983  T
Q  116 gagccgagcctggacactagccgaggctagctgggggtggctccgcccctg 166  Q
    |||| |||||||| ||   ||| ||||||||||||||||||||||||||||    
T  27321984 gagctgagcctgggcaagtgcccaggctagctgggggtggctccgcccctg 27322034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 71 - 166
Target Start/End: Original strand, 36406590 - 36406686
Alignment:
Q  71 agctaaaatttctagtaatggttgggtttgctacaaagaaagttggagccgagcctggacactagccgaggctagct-gggggtggctccgcccctg 166  Q
    |||||||| || |||||||| ||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||    
T  36406590 agctaaaaattatagtaatgtttgggcttgctacaaagaaagttggagccgagcctgggcactagcccaggctagctggggggtggctccgcccctg 36406686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 22 - 165
Target Start/End: Original strand, 34282931 - 34283081
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgc------agctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||      |||||||| |||||||||||  |||  ||||||||||||||||||    
T  34282931 caaaatctgcaggaaatgtgtttcctgcagaatttacactaaaatccgcaagaaaagctaaaagttctagtaatgactggacttgctacaaagaaagttg 34283030  T
Q  116 gagccgagcctggacactagccgaggctagct-gggggtggctccgcccct 165  Q
    |||| |||||||| |    ||| ||||||||| ||||||||||||||||||    
T  34283031 gagctgagcctgggctagtgcccaggctagctggggggtggctccgcccct 34283081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 71 - 162
Target Start/End: Original strand, 3384120 - 3384211
Alignment:
Q  71 agctaaaatttctagtaatggttgggtttgctacaaagaaagttggagccgagcctggacactagccgaggctagctgggggtggctccgcc 162  Q
    |||||||| ||||| ||||||| ||  |||||||||||||||||||||| |||||||| ||||| || ||||||||||| ||||||||||||    
T  3384120 agctaaaaattctaataatggtaggacttgctacaaagaaagttggagctgagcctgggcactaacccaggctagctggaggtggctccgcc 3384211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 20 - 166
Target Start/End: Complemental strand, 38214842 - 38214689
Alignment:
Q  20 gacaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgc------agctaaaatttctagtaatggttgggtttgctacaaagaaagt 113  Q
    |||||||||||||||||||||||||  ||| ||||||||| ||||||||||      |||||||| |||||||| ||| |||  |||||||||||||| |    
T  38214842 gacaaaatctgcaggaaatgtgttttatgcagaatttacataaaaatccgcaggaaaagctaaaagttctagtattggctggacttgctacaaagaaaat 38214743  T
Q  114 tggagccgagcctggacactagccgaggctagct-gggggtggctccgcccctg 166  Q
    |||||| ||||| || |    ||| ||||||||| |||||||||||||||||||    
T  38214742 tggagctgagcccgggctagtgcccaggctagctggggggtggctccgcccctg 38214689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 13243175 - 13243120
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcagctaaa 77  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||    
T  13243175 caaaatctacaggaaatgtgtttcctgcggaatttacacaaaactccgcagataaa 13243120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 36406523 - 36406573
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag 72  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  36406523 caaaatctgcaggaaatgtgtttcctacggaatttacacaaatatccgcag 36406573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 39431696 - 39431751
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcagctaaa 77  Q
    ||||||||||| |||||||||||||| |||||||||||||||| ||||||| ||||    
T  39431696 caaaatctgcacgaaatgtgtttcctacggaatttacacaaaactccgcaggtaaa 39431751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 80 - 166
Target Start/End: Original strand, 21138156 - 21138243
Alignment:
Q  80 ttctagtaatggttgggtttgctacaaagaaagttggagccgagcctggacactagccgaggctagct-gggggtggctccgcccctg 166  Q
    |||||||||||||| || |||||||||||||||| | ||| ||||||||||    ||| | ||||||| |||||||||||||||||||    
T  21138156 ttctagtaatggttaggcttgctacaaagaaagtagaagctgagcctggactaatgcctatgctagctggggggtggctccgcccctg 21138243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 166
Target Start/End: Original strand, 39431763 - 39431859
Alignment:
Q  71 agctaaaatttctagtaatggttgggtttgctacaaagaaagttggagccgagcctggacactagccgaggctagct-gggggtggctccgcccctg 166  Q
    |||||||| ||| |||||| |  |||||||||||||||||||||||||| ||||| || |    ||| ||||||||| ||||||||||| |||||||    
T  39431763 agctaaaagttcaagtaattgaagggtttgctacaaagaaagttggagctgagcccgggctagtgcccaggctagctggggggtggctctgcccctg 39431859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 40)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 22 - 171
Target Start/End: Complemental strand, 30249046 - 30248890
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag------ctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||      |||||| |||||||||| |||||| ||||||||||||||||||    
T  30249046 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcagaaaaagctaaaaattctagtaatagttgggcttgctacaaagaaagttg 30248947  T
Q  116 gagccgagcctggacactagccgaggctagctg-ggggtggctccgcccctgtgtgt 171  Q
    ||||||||||||| |||||||| |||||||||| |||||||||||||||||| ||||    
T  30248946 gagccgagcctgggcactagcccaggctagctggggggtggctccgcccctgagtgt 30248890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 22 - 166
Target Start/End: Complemental strand, 34444047 - 34443896
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag------ctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    ||||||||||||||||||  |||| ||||||||||| ||||||||||||||      ||| || ||||||||||||| ||| ||||||||||||||||||    
T  34444047 caaaatctgcaggaaatgcatttcttgcggaatttagacaaaaatccgcaggaaaagctacaaattctagtaatggtagggcttgctacaaagaaagttg 34443948  T
Q  116 gagccgagcctggacactagccgaggctagctg-ggggtggctccgcccctg 166  Q
    |||| |||||||| |||||||| |||||||||| ||||||||||||||||||    
T  34443947 gagctgagcctgggcactagcccaggctagctggggggtggctccgcccctg 34443896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 22 - 166
Target Start/End: Complemental strand, 35468984 - 35468821
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag------------------ctaaaat-ttctagtaatggttgggtttgct 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||                  ||||||  |||||| |||||||||| |||||    
T  35468984 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcagaaaaatccgcagaaaaagctaaaaaattctagcaatggttgggcttgct 35468885  T
Q  103 acaaagaaagttggagccgagcctggacactagccgaggctagctgggggtggctccgcccctg 166  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  35468884 acaaagaaagttggagccgagcctgggcactagcccaggctagctgggggtggctccgcccctg 35468821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 22 - 166
Target Start/End: Complemental strand, 15675394 - 15675232
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcagctaaa------------------atttctagtaatggttgggtttgcta 103  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||                  | |||||||||||||||||||||| |    
T  15675394 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaactccgcaggtaaatccgcagaaaaagttaaaaattctagtaatggttgggtttgcaa 15675295  T
Q  104 caaagaaagttggagccgagcctggacactagccgaggctagctgggggtggctccgcccctg 166  Q
    ||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  15675294 caaagaaagttagagccgagcctgggcactagcccaggctagctgggggtggctccgcccctg 15675232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 22 - 166
Target Start/End: Complemental strand, 15503997 - 15503847
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgc------agctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||      |||||||| |||||||||||||| || |||||||||||||| |||    
T  15503997 caaaatctgcaggaaatgtgtttcctgcagaatttacacaaaaatccgcaggaaaagctaaaaattctagtaatggttaggcttgctacaaagaaatttg 15503898  T
Q  116 gagccgagcctggacactagccgaggctagctgggggtggctccgcccctg 166  Q
     ||  |||||||| |    ||| || |||||| ||||||||||||||||||    
T  15503897 aaggtgagcctgggctagtgcccagactagcttggggtggctccgcccctg 15503847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 22 - 166
Target Start/End: Complemental strand, 33006988 - 33006824
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag------------------ctaaaatttctagtaatggttgggtttgcta 103  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||                  ||||||  | |||||||||||||||||||||    
T  33006988 caaaatctgcaggaaatgtgtttcctacggaatttacacaaaaatccgcaggtaaatccgcaggaaaagctaaaaaatttagtaatggttgggtttgcta 33006889  T
Q  104 caaagaaagttggagccgagcctggacactagccgaggctagctg--ggggtggctccgcccctg 166  Q
    ||||||||||||||||||||||||| || ||||| ||||||||||  ||||||||||| ||||||    
T  33006888 caaagaaagttggagccgagcctgggcattagcccaggctagctgggggggtggctcctcccctg 33006824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 71 - 162
Target Start/End: Complemental strand, 34846381 - 34846289
Alignment:
Q  71 agctaaaatttctagtaatggttgggtttgctacaaagaaagttggagccgagcctggacactagccgaggctagctg-ggggtggctccgcc 162  Q
    |||||||| |||||||||||||| |  ||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||    
T  34846381 agctaaaaattctagtaatggtttgacttgctacaaagaaagttggagccgagcctgggcactagcccaggctagctggggggtggctccgcc 34846289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 71 - 165
Target Start/End: Complemental strand, 2476430 - 2476335
Alignment:
Q  71 agctaaaatttctagtaatggttgggtttgctacaaagaaagttggagccgagcctggacactagccgaggctagctg-ggggtggctccgcccct 165  Q
    |||||||| ||||||||||||| ||  |||||||||||||| ||||||| |||||||| |||||||| |||||||||| |||| ||||||||||||    
T  2476430 agctaaaaattctagtaatggtaggacttgctacaaagaaaattggagctgagcctgggcactagcccaggctagctggggggaggctccgcccct 2476335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 16667516 - 16667571
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcagctaaa 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  16667516 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaggtaaa 16667571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 74 - 167
Target Start/End: Original strand, 1672579 - 1672672
Alignment:
Q  74 taaaatttctagtaatggttgggtttgctacaaagaaagttggagccgagcctggacactagccgaggctagctgggggtggctccgcccctgt 167  Q
    ||||| ||||||||||||||||| |||||||||||||| ||||||| |||||||  |    ||| |||||||||||||||||||||||||||||    
T  1672579 taaaagttctagtaatggttgggattgctacaaagaaaattggagctgagcctgagctagtgcccaggctagctgggggtggctccgcccctgt 1672672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 23 - 168
Target Start/End: Original strand, 36234606 - 36234757
Alignment:
Q  23 aaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgc------agctaaaatttctagtaatggttgggtttgctacaaagaaagttgg 116  Q
    ||||||||||||||||| ||||||||| ||||||||| ||||||||||      || ||||| ||||| |||||| |||| |||||||||||||| ||||    
T  36234606 aaaatctgcaggaaatgcgtttcctgctgaatttacataaaaatccgcatgaaaagttaaaagttctaataatggctgggcttgctacaaagaaaattgg 36234705  T
Q  117 agccgagcctggacactagccgaggctagctgggggtggctccgcccctgtg 168  Q
    ||| ||| |||| |    | | |||||| |||||||||||||||||| ||||    
T  36234706 agctgagtctgggctagtgtccaggctaactgggggtggctccgcccatgtg 36234757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 74 - 166
Target Start/End: Original strand, 14832864 - 14832955
Alignment:
Q  74 taaaatttctagtaatggttgggtttgctacaaagaaagttggagccgagcctggacactagccgaggctagctgggggtggctccgcccctg 166  Q
    ||||| || |||||||||||||  |||||||||| ||||||||||||||||||||  ||||||| ||  |||||||||||| |||||||||||    
T  14832864 taaaaattttagtaatggttggacttgctacaaa-aaagttggagccgagcctgggtactagcccagcttagctgggggtgactccgcccctg 14832955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 17192688 - 17192740
Alignment:
Q  18 ttgacaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgc 70  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  17192688 ttgacaaaatctgcaggaaatgtatttcctgcggaattgacacaaaaatccgc 17192740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 43228665 - 43228720
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcagctaaa 77  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||    
T  43228665 caaaatctgcaggaaatgtgtttcctgcggaatttacataaacatccgcaggtaaa 43228720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 71 - 166
Target Start/End: Original strand, 43228732 - 43228827
Alignment:
Q  71 agctaaaatttctagtaatggttgggtttgctacaaagaaagttggagccgagcctggacactagccgaggctagctgggggtggctccgcccctg 166  Q
    |||||||| |||||||||||| |||| |||||||||||||| ||||||  |||||| | |    ||| ||||||||||||||||||||||||||||    
T  43228732 agctaaaagttctagtaatggctgggcttgctacaaagaaaattggagttgagccttggctagtgcccaggctagctgggggtggctccgcccctg 43228827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 80 - 166
Target Start/End: Complemental strand, 13694852 - 13694766
Alignment:
Q  80 ttctagtaatggttgggtttgctacaaagaaagttggagccgagcctggacactagccgaggctagctgggggtggctccgcccctg 166  Q
    |||||||||||| |||| |||||||||||||||||| ||  |||||||| |    ||| ||||||||||||||||||||||||||||    
T  13694852 ttctagtaatggatgggcttgctacaaagaaagttgaagttgagcctgggctagtgcccaggctagctgggggtggctccgcccctg 13694766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 73 - 171
Target Start/End: Complemental strand, 37779688 - 37779590
Alignment:
Q  73 ctaaaatttctagtaatggttgggtttgctacaaagaaagttggagccgagcctggacactagccgaggctagctgggggtggctccgcccctgtgtgt 171  Q
    |||||| |||||||||||| ||   |||||||||||||| ||||||  ||||||||||    ||| |||||||||||||||||||||||||||| ||||    
T  37779688 ctaaaagttctagtaatggctgaacttgctacaaagaaaattggagttgagcctggactagtgcccaggctagctgggggtggctccgcccctgggtgt 37779590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 71 - 166
Target Start/End: Complemental strand, 16567817 - 16567721
Alignment:
Q  71 agctaaaatttctagtaatggttgggtttgctacaaagaaagttggagccgagcctggacactagccgaggctagct-gggggtggctccgcccctg 166  Q
    |||||||| |||||||||||| |||  |||||||||||||| ||||||| |||||||| |    ||| ||||||||| |||||||||||||||||||    
T  16567817 agctaaaagttctagtaatggctggacttgctacaaagaaaattggagctgagcctgggctagtgcccaggctagctggggggtggctccgcccctg 16567721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 42989613 - 42989565
Alignment:
Q  24 aaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag 72  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  42989613 aaatccgcaggaaatgtgtttcctgcggaatttacacaaaaattcgcag 42989565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 7162106 - 7162161
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcagctaaa 77  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||| ||| ||||    
T  7162106 caaaatctgcaggaaatgtgtttcctgtggaatttacataaaaatcctcaggtaaa 7162161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 12267432 - 12267487
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcagctaaa 77  Q
    |||||||| ||||||||||||||| ||||||||||||| |||||||||||| ||||    
T  12267432 caaaatctacaggaaatgtgtttcttgcggaatttacataaaaatccgcaggtaaa 12267487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 173
Target Start/End: Original strand, 13942872 - 13942975
Alignment:
Q  71 agctaaaatttctagtaatggttgggtttgctacaaagaaagttggagccgagcctggacactagccgaggctagctggg-ggtggctccgcccctgtgt 169  Q
    |||| ||| ||||||||| || ||||||||||||||||||||||||| | |||||||| |    ||| ||||||| |||| |||||||||||||||| ||    
T  13942872 agctcaaagttctagtaaaggctgggtttgctacaaagaaagttggacctgagcctgggctagtgcccaggctagttgggaggtggctccgcccctgagt 13942971  T
Q  170 gtga 173  Q
    ||||    
T  13942972 gtga 13942975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 21069090 - 21069035
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcagctaaa 77  Q
    |||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||    
T  21069090 caaaatctgcaggaaatgtgtttcttgcggaatatacacaaaaatgcgcaggtaaa 21069035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 34846448 - 34846401
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccg 69  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  34846448 caaaatctgtaggaaatgtgtttactgcggaatttacacaaaaatccg 34846401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 71 - 128
Target Start/End: Original strand, 7162173 - 7162230
Alignment:
Q  71 agctaaaatttctagtaatggttgggtttgctacaaagaaagttggagccgagcctgg 128  Q
    ||||||||||| ||||||||| |||| |||||||||||||| ||||||| ||||||||    
T  7162173 agctaaaatttttagtaatggctgggcttgctacaaagaaaattggagctgagcctgg 7162230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 71 - 128
Target Start/End: Original strand, 17192759 - 17192816
Alignment:
Q  71 agctaaaatttctagtaatggttgggtttgctacaaagaaagttggagccgagcctgg 128  Q
    |||||||| |||||||||||| || | |||||||||||||||||||||| ||||||||    
T  17192759 agctaaaagttctagtaatggctgagcttgctacaaagaaagttggagctgagcctgg 17192816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 71 - 163
Target Start/End: Original strand, 32953757 - 32953850
Alignment:
Q  71 agctaaaatttctagtaatggttgggtttgctacaaagaaagttggagccgagcctggacactagccgaggctagct-gggggtggctccgccc 163  Q
    |||||||| |||||||||||| |||| |||||||||||||| ||||||| |||||| | |    ||| ||||||||| ||||||||||||||||    
T  32953757 agctaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctcggctagtgcccaggctagctggggggtggctccgccc 32953850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 98 - 171
Target Start/End: Complemental strand, 37607454 - 37607381
Alignment:
Q  98 ttgctacaaagaaagttggagccgagcctggacactagccgaggctagctgggggtggctccgcccctgtgtgt 171  Q
    |||||||||||||| ||||||  ||||||||||    ||| |||||||||||||||||||||||||||| ||||    
T  37607454 ttgctacaaagaaaattggagttgagcctggactagtgcccaggctagctgggggtggctccgcccctgggtgt 37607381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 32953690 - 32953734
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaat 66  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||    
T  32953690 caaaatctgcaggaaatgtgtttcctacggaatttacataaaaat 32953734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 767363 - 767316
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccg 69  Q
    ||||| ||| |||||||||||||||||||||||||| |||||||||||    
T  767363 caaaacctgtaggaaatgtgtttcctgcggaatttatacaaaaatccg 767316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 72 - 166
Target Start/End: Complemental strand, 21069022 - 21068927
Alignment:
Q  72 gctaaaatttctagtaatggttgggtttgctacaaagaaagttggagccgagcctggacactagccgaggctagctgggg-gtggctccgcccctg 166  Q
    ||||||| ||||||||||||||||| || |||||||||||||| |||  |||||||  |    ||| ||||||||||||| |||||||||||||||    
T  21069022 gctaaaaattctagtaatggttgggcttactacaaagaaagttagagttgagcctgagctagtgcccaggctagctggggtgtggctccgcccctg 21068927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 6900799 - 6900752
Alignment:
Q  71 agctaaaatttctagtaatggttgggtttgctacaaagaaagttggag 118  Q
    |||||||| |||||||||||| || | |||||||||||||||||||||    
T  6900799 agctaaaagttctagtaatggctgagcttgctacaaagaaagttggag 6900752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 16567884 - 16567829
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcagctaaa 77  Q
    ||||||||| ||||||||||||||||||| |||||||| || ||| ||||| ||||    
T  16567884 caaaatctgtaggaaatgtgtttcctgcgaaatttacataacaattcgcaggtaaa 16567829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 37607552 - 37607513
Alignment:
Q  20 gacaaaatctgcaggaaatgtgtttcctgcggaatttaca 59  Q
    |||||||||||||||||||||||||| | |||||||||||    
T  37607552 gacaaaatctgcaggaaatgtgtttcatacggaatttaca 37607513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 37779759 - 37779720
Alignment:
Q  20 gacaaaatctgcaggaaatgtgtttcctgcggaatttaca 59  Q
    |||||||||||||||||||||||||| | |||||||||||    
T  37779759 gacaaaatctgcaggaaatgtgtttcatacggaatttaca 37779720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 1672509 - 1672559
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag 72  Q
    |||||||||||| |||| ||||||||||||||| |||| |||||| |||||    
T  1672509 caaaatctgcagaaaatatgtttcctgcggaatgtacataaaaattcgcag 1672559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 7159624 - 7159669
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatc 67  Q
    ||||||| |||||||| |||||||||||||||| ||||| ||||||    
T  7159624 caaaatccgcaggaaacgtgtttcctgcggaatgtacaccaaaatc 7159669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 12267499 - 12267547
Alignment:
Q  71 agctaaaatttctagtaatggttgggtttgctacaaagaaagttggagc 119  Q
    |||||||| |||||||||| | | || ||||||||||||||||||||||    
T  12267499 agctaaaagttctagtaattgctaggcttgctacaaagaaagttggagc 12267547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 16667592 - 16667640
Alignment:
Q  80 ttctagtaatggttgggtttgctacaaagaaagttggagccgagcctgg 128  Q
    |||||||||||| |||  |||||||||||||||||||||| ||| ||||    
T  16667592 ttctagtaatggctggacttgctacaaagaaagttggagctgagtctgg 16667640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 37654878 - 37654826
Alignment:
Q  25 aatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcagctaaa 77  Q
    |||||||||||||||||||||||  |||||||||| || ||| ||||| ||||    
T  37654878 aatctgcaggaaatgtgtttcctatggaatttacataacaattcgcaggtaaa 37654826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 2e-47; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 22 - 166
Target Start/End: Original strand, 41114903 - 41115054
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag------ctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||      |||||| ||||||||||||||| | ||||||||||||||||||    
T  41114903 caaaatctgcaggaaatgtgtttcctgcggaatttacacgaaaatccgcaggaaaaactaaaaattctagtaatggttgagcttgctacaaagaaagttg 41115002  T
Q  116 gagccgagcctggacactagccgaggctagctggggg-tggctccgcccctg 166  Q
    ||||||||||||| |||||||| |||||||||||||| ||||||||||||||    
T  41115003 gagccgagcctgggcactagcccaggctagctgggggatggctccgcccctg 41115054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 22 - 166
Target Start/End: Complemental strand, 13203849 - 13203698
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag------ctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||      |||||| ||||||||||||||||| ||||||||||||||||||    
T  13203849 caaaatctgcaggaaacgtgtttcctgcggaatttacacaaaaatccgcaggaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttg 13203750  T
Q  116 gagccgagcctggacactagccgaggctagctg-ggggtggctccgcccctg 166  Q
    |||| |||||||| |||||||| |||||||||| ||||||||||| ||||||    
T  13203749 gagctgagcctgggcactagcccaggctagctggggggtggctccacccctg 13203698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 22 - 167
Target Start/End: Original strand, 22572734 - 22572885
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag------ctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| |||||      |||||  |||||||||||||| || ||||||||||||||||||    
T  22572734 caaaatctgcaggaaatgtgtttcctggggaatttacacaaaaattcgcaggaaaagctaaatattctagtaatggttaggcttgctacaaagaaagttg 22572833  T
Q  116 gagccgagcctggacactagccgaggctagctgggggtggctccgcccctgt 167  Q
    |||| ||||||||||||||||| |||||||| ||||||||||||||| ||||    
T  22572834 gagctgagcctggacactagcccaggctagccgggggtggctccgccgctgt 22572885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 22 - 137
Target Start/End: Original strand, 6799919 - 6800040
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgc------agctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||      || ||||| ||||||||||||||| | ||||||||||||||||||    
T  6799919 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaggaaaagttaaaaattctagtaatggttgagcttgctacaaagaaagttg 6800018  T
Q  116 gagccgagcctggacactagcc 137  Q
    ||||||||||||| ||||||||    
T  6800019 gagccgagcctgggcactagcc 6800040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 22 - 130
Target Start/End: Complemental strand, 17148863 - 17148749
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag------ctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||      |||||| || ||||||||| || | ||||||||||||||||||    
T  17148863 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaggtaaacctaaaagttatagtaatggctgagcttgctacaaagaaagttg 17148764  T
Q  116 gagccgagcctggac 130  Q
    |||| ||||||||||    
T  17148763 gagctgagcctggac 17148749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 18299176 - 18299278
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgc------agctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||      || ||||| ||||||||||||||||| ||||||||||||||||||    
T  18299176 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaagaaaagttaaaaattctagtaatggttgggcttgctacaaagaaagttg 18299275  T
Q  116 gag 118  Q
    |||    
T  18299276 gag 18299278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 22 - 118
Target Start/End: Complemental strand, 12000605 - 12000502
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaa-atccgc------agctaaaatttctagtaatggttgggtttgctacaaagaaagtt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||      |||||||| ||||| |||||| |||  ||| |||||||||||||    
T  12000605 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaacatccgcaggaaaagctaaaacttctactaatggctggacttgttacaaagaaagtt 12000506  T
Q  115 ggag 118  Q
    ||||    
T  12000505 ggag 12000502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 125
Target Start/End: Complemental strand, 29257448 - 29257339
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccg------cagctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||       || ||||| || || ||||| ||||| || |||||||||||||||    
T  29257448 caaaatctgcaggaaatgtgtttcctgcgaaatttacacaaaaatccgaaggaaaaggtaaaaattttaataatgattgggctttctacaaagaaagttg 29257349  T
Q  116 gagccgagcc 125  Q
    |||| |||||    
T  29257348 gagctgagcc 29257339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 71 - 128
Target Start/End: Complemental strand, 25562950 - 25562893
Alignment:
Q  71 agctaaaatttctagtaatggttgggtttgctacaaagaaagttggagccgagcctgg 128  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  25562950 agctaaaagttctagtaatggttgggcttgctacaaagaaagttggagctgagcctgg 25562893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 2475917 - 2475790
Alignment:
Q  14 atcattgacaaaatctgcaggaaatgtgtttcctg-----cggaatttacacaaaaatccgca------gctaaaatttctagtaatggttgggtttgct 102  Q
    ||||||| ||||||||||| |||||| ||||| ||     |||||||||||||||||||||||      ||||||| |||||||||||| |||| || ||    
T  2475917 atcattggcaaaatctgcaagaaatgagtttcatgttgtgcggaatttacacaaaaatccgcaagacaagctaaaagttctagtaatggctgggcttcct 2475818  T
Q  103 acaaagaaagttggagccgagcctggac 130  Q
    ||||||||||||||||| ||| ||||||    
T  2475817 acaaagaaagttggagctgagtctggac 2475790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 164
Target Start/End: Complemental strand, 41010556 - 41010409
Alignment:
Q  23 aaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag------ctaaaatttctagtaatggttgggtttgctacaaagaaagttgg 116  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||      |||||| |||||||||| | ||   ||  |||||| ||||||||    
T  41010556 aaaatctgcaggaaatgtgtttcctgcagaatttatacaaaaatccgcagaaaaaactaaaagttctagtaatagctgaacttagtacaaaaaaagttgg 41010457  T
Q  117 agccgagcctggacactagccgaggctagctgggggtggctccgcccc 164  Q
    ||| ||| || |||    ||| ||||||||||||| ||||||||||||    
T  41010456 agctgagtctagactagtgcccaggctagctggggttggctccgcccc 41010409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 124
Target Start/End: Original strand, 304158 - 304264
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag------ctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    ||||||||||| ||||||||||||||||| |||||||||||   |||||||      |||||| |||||||||||| || | ||||||||||||||||||    
T  304158 caaaatctgcaagaaatgtgtttcctgcgaaatttacacaac--tccgcaggaaaagctaaaagttctagtaatggctgagcttgctacaaagaaagttg 304255  T
Q  116 gagccgagc 124  Q
    |||| ||||    
T  304256 gagctgagc 304264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 166
Target Start/End: Original strand, 33909376 - 33909525
Alignment:
Q  23 aaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag------ctaaaatttctagtaatggttgggtttgctacaaagaaagttgg 116  Q
    |||||||||||||||||| | |||||| |||||| ||||||||| |||||      |||||| |||||||||||  || | |||||||||||||||||||    
T  33909376 aaaatctgcaggaaatgtttctcctgcagaattttcacaaaaattcgcaggaaaaactaaaaattctagtaatgactgagcttgctacaaagaaagttgg 33909475  T
Q  117 agccgagcctggacactagccgaggctagctgggggtggctccgcccctg 166  Q
    |||  || |||| |    ||| ||| |||||| |||||||||||||||||    
T  33909476 agctaagtctgggctagtgcccaggttagctgagggtggctccgcccctg 33909525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 25563017 - 25562967
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag 72  Q
    ||||||||||||||||||| |||||||||||||||||| || |||||||||    
T  25563017 caaaatctgcaggaaatgtatttcctgcggaatttacaaaacaatccgcag 25562967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 64
Target Start/End: Complemental strand, 15651281 - 15651247
Alignment:
Q  30 gcaggaaatgtgtttcctgcggaatttacacaaaa 64  Q
    |||||||||||||||||||||||||||||||||||    
T  15651281 gcaggaaatgtgtttcctgcggaatttacacaaaa 15651247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 17249400 - 17249354
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatcc 68  Q
    |||||||| || ||||||||||||||| |||||||||||||||||||    
T  17249400 caaaatctacaagaaatgtgtttcctgtggaatttacacaaaaatcc 17249354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 15429264 - 15429213
Alignment:
Q  18 ttgacaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccg 69  Q
    |||||||||||  |||||||  ||||||||||||||||||||| ||||||||    
T  15429264 ttgacaaaatccacaggaaacatgtttcctgcggaatttacaccaaaatccg 15429213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 166
Target Start/End: Complemental strand, 15651198 - 15651169
Alignment:
Q  137 cgaggctagctgggggtggctccgcccctg 166  Q
    ||||||||||||||||||||||||||||||    
T  15651198 cgaggctagctgggggtggctccgcccctg 15651169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 8e-47; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 22 - 166
Target Start/End: Complemental strand, 53651985 - 53651835
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag------ctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||      |||||| ||||||||||||| ||| ||||||||||||||||||    
T  53651985 caaaatctgcaggaaatgcatttcctgcggaatttacacaaaaatccgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttg 53651886  T
Q  116 gagccgagcctggacactagccgaggctagctgggggtggctccgcccctg 166  Q
    |||| |||||||| |||||||| ||||||||||||||||||||||||||||    
T  53651885 gagctgagcctgggcactagcccaggctagctgggggtggctccgcccctg 53651835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 22 - 166
Target Start/End: Complemental strand, 44047671 - 44047520
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag------ctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    |||||||||||||||||   |||||||||||||||||||||||||||||||      |||||| ||||||||||||| ||| ||||||||||||||||||    
T  44047671 caaaatctgcaggaaatacatttcctgcggaatttacacaaaaatccgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttg 44047572  T
Q  116 gagccgagcctggacactagccgaggctagctg-ggggtggctccgcccctg 166  Q
    |||| ||||||||  ||||||| |||||||||| ||||||||||||||||||    
T  44047571 gagctgagcctgggtactagcccaggctagctggggggtggctccgcccctg 44047520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 34 - 167
Target Start/End: Complemental strand, 44625773 - 44625633
Alignment:
Q  34 gaaatgtgtttcctgcggaatttacacaaaaatccgcag------ctaaaatttctagtaatggttgggtttgctacaaagaaagttggagccgagcctg 127  Q
    |||||||||||||| | ||||||||||||||||| ||||      |||||| |||||||||| |||||| ||||||||||||||||||||||||||||||    
T  44625773 gaaatgtgtttcctccagaatttacacaaaaatctgcaggaaaagctaaaaattctagtaatagttgggcttgctacaaagaaagttggagccgagcctg 44625674  T
Q  128 gacactagccgaggctagctg-ggggtggctccgcccctgt 167  Q
    | |||||||| |||||||||| |||||||||||||||||||    
T  44625673 ggcactagcccaggctagctggggggtggctccgcccctgt 44625633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 22 - 166
Target Start/End: Complemental strand, 37516729 - 37516567
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgc------------------agctaaaatttctagtaatggttgggtttgcta 103  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||                  |||||||| ||||||||||||||||  ||||||    
T  37516729 caaaatctgcaggaaatgtgtttcctgcagaatttacacaaaattccgcaggtaaatccgcaggaaaagctaaaaattctagtaatggttggacttgcta 37516630  T
Q  104 caaagaaagttggagccgagcctggacactagccgaggctagctgggggtggctccgcccctg 166  Q
    |||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||    
T  37516629 caaagaaagttggaaccgagcctgggcactagcccaggctagctgggggtggctccgcccctg 37516567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 22 - 168
Target Start/End: Complemental strand, 28311364 - 28311211
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag------ctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    |||||||| ||||||||   |||||||||||||||||||||||||||||||      |||||| ||||||||||||| ||| ||| ||||||||||||||    
T  28311364 caaaatctacaggaaatacatttcctgcggaatttacacaaaaatccgcaggaaaaactaaaaattctagtaatggtagggcttgttacaaagaaagttg 28311265  T
Q  116 gagccgagcctggacactagccgaggctagctg-ggggtggctccgcccctgtg 168  Q
    |||| |||||||| |||||  | |||||||||| ||||||||||||||||||||    
T  28311264 gagctgagcctgggcactattccaggctagctggggggtggctccgcccctgtg 28311211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 42 - 166
Target Start/End: Original strand, 25391878 - 25392009
Alignment:
Q  42 tttcctgcggaatttacacaaaaatccgcag------ctaaaatttctagtaatggttgggtttgctacaaagaaagttggagccgagcctggacactag 135  Q
    |||| ||||||||||||||||||||||||||      |||||| ||||||||||||| ||| ||||||| |||||||||||||| |||||||| || |||    
T  25391878 tttcttgcggaatttacacaaaaatccgcaggaaaagctaaaaattctagtaatggtagggcttgctacgaagaaagttggagctgagcctgggcattag 25391977  T
Q  136 ccgaggctagct-gggggtggctccgcccctg 166  Q
    || ||||||||| |||||||||||||||||||    
T  25391978 cccaggctagctggggggtggctccgcccctg 25392009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 22 - 166
Target Start/End: Original strand, 26371055 - 26371218
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag------------------ctaaaatttctagtaatggttgggtttgcta 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||                  ||||||||||||||||||||||| |||||||    
T  26371055 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaggtaaatccgcagaaaatgctaaaatttctagtaatggttggatttgcta 26371154  T
Q  104 caaagaaagttggagccgagcctggacactagccgaggctagct-gggggtggctccgcccctg 166  Q
     ||| |||||||||||||||||| | |||||||| ||||||| | |||||||||||| ||||||    
T  26371155 aaaataaagttggagccgagcctaggcactagcccaggctagttggggggtggctccacccctg 26371218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 71 - 161
Target Start/End: Original strand, 43700243 - 43700333
Alignment:
Q  71 agctaaaatttctagtaatggttgggtttgctacaaagaaagttggagccgagcctggacactagccgaggctagctgggggtggctccgc 161  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||  |||||| | |||||| ||||||||||||||||    
T  43700243 agctaaaaattctagtaatggttgggcttgctacaaagaaagttggagccgagcctgagcactagtccaggctaactgggggtggctccgc 43700333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 22 - 167
Target Start/End: Complemental strand, 53987951 - 53987799
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgc------agctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||      |||||||| ||||||||||||||| | |  ||||||||||| |||    
T  53987951 caaaatctgcaggaaatgtgtttcctgcggaatttacataaaaatccgcaggaaaagctaaaagttctagtaatggttgagctgactacaaagaaaattg 53987852  T
Q  116 gagccgagcctggacactagccgaggctagctg-ggggtggctccgcccctgt 167  Q
     ||| ||||||||||    ||| | |||||||| |||||||||||||||||||    
T  53987851 aagctgagcctggactagtgcccaagctagctgaggggtggctccgcccctgt 53987799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 22 - 167
Target Start/End: Complemental strand, 9600437 - 9600286
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgc------agctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||      ||| |||| |||||||||||| |||| || ||||||||||| | |    
T  9600437 caaaatctgcaggaaatgtgtttcctgcagaatttacataaaaatccgcaggaaaagccaaaagttctagtaatggctgggattactacaaagaaaatag 9600338  T
Q  116 gagccgagcctggacactagccgaggctagctgggggtggctccgcccctgt 167  Q
    |||| |||| ||| |    ||| |||||||||||||||||||||||||||||    
T  9600337 gagctgagcttgggctagtgcccaggctagctgggggtggctccgcccctgt 9600286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 33179158 - 33179268
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgc------agctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||      |||||||| |||||||||||| |||  |||||||||| |||||||    
T  33179158 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaattcgcaggaaaagctaaaagttctagtaatggctggacttgctacaaaaaaagttg 33179257  T
Q  116 gagccgagcct 126  Q
    |||| ||||||    
T  33179258 gagctgagcct 33179268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 42 - 166
Target Start/End: Complemental strand, 12909887 - 12909763
Alignment:
Q  42 tttcctgcggaatttacacaaaaatccgcag------ctaaaatttctagtaatggttgggtttgctacaaagaaagttggagccgagcctggacactag 135  Q
    |||||||||||||||||||||||||||||||      |||||| ||||||||||||| ||| |||||||||||||||||||||| |||||||       |    
T  12909887 tttcctgcggaatttacacaaaaatccgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttggagctgagcctg-------g 12909795  T
Q  136 ccgaggctagct-gggggtggctccgcccctg 166  Q
    || ||||||||| |||||||||||||||||||    
T  12909794 cccaggctagctggggggtggctccgcccctg 12909763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 53068329 - 53068226
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgc------agctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||      || ||||| |||||||||||| |||  ||| ||||||||||||||    
T  53068329 caaaatctgcaggaaatgtgtttcctgtggaatttacacaaaaatccgcaggaaaagttaaaacttctagtaatggctggacttgttacaaagaaagttg 53068230  T
Q  116 gagc 119  Q
    ||||    
T  53068229 gagc 53068226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 22 - 164
Target Start/End: Complemental strand, 14461152 - 14461007
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcagc------taaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    |||||||||||||| ||   |||||||||||||||||| ||||||||||||       ||||| ||||||||||||| ||| |||||||||||||| |||    
T  14461152 caaaatctgcaggacatacatttcctgcggaatttacataaaaatccgcaggaaaagttaaaaattctagtaatggtagggcttgctacaaagaaaattg 14461053  T
Q  116 gagccgagcctggacactagccgaggctagctgggggtggctccgcccc 164  Q
    |||| |||||||| |   |||| ||||| |||||||| |||||||||||    
T  14461052 gagctgagcctgggc---agcccaggctcgctgggggaggctccgcccc 14461007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 7501043 - 7500919
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgc------------------agctaaaatttctagtaatggttgggtttgcta 103  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||                  |||||||| ||||||||||||||||| ||||||    
T  7501043 caaaatctgtaggaaatgtgtttcctgcggaatttacacaaacatccgcatgtaaatccgcaggaaaagctaaaaattctagtaatggttgggcttgcta 7500944  T
Q  104 caaagaaagttggagccgagcctgg 128  Q
    |||||||||||||||||||||||||    
T  7500943 caaagaaagttggagccgagcctgg 7500919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 35077311 - 35077267
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaat 66  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  35077311 caaaatctgcaggaaatgtgtttcctgcggaatttacataaaaat 35077267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 26278450 - 26278403
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccg 69  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||    
T  26278450 caaaatctgcaggaaatgtgtttcctccggaatttacataaaaatccg 26278403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 41218405 - 41218454
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgca 71  Q
    ||||||| |||||||||||||||||||||||||||| |||||||| ||||    
T  41218405 caaaatcggcaggaaatgtgtttcctgcggaatttagacaaaaatgcgca 41218454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 166
Target Start/End: Original strand, 41218472 - 41218568
Alignment:
Q  71 agctaaaatttctagtaatggttgggtttgctacaaagaaagttggagccgagcctggacactagccgaggctagct-gggggtggctccgcccctg 166  Q
    |||||||| |||||||||||| |||| ||||||||| |||||| ||||| |||||||| |    ||  ||||||||| |||||||||||||||||||    
T  41218472 agctaaaagttctagtaatggctgggcttgctacaaggaaagtcggagctgagcctgggctagtgctcaggctagctggggggtggctccgcccctg 41218568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 160
Target Start/End: Original strand, 41358725 - 41358805
Alignment:
Q  80 ttctagtaatggttgggtttgctacaaagaaagttggagccgagcctggacactagccgaggctagctgggggtggctccg 160  Q
    ||||| ||||||||| |||||||||||||||||| | ||| ||| ||||||    ||| ||||||||||||||||||||||    
T  41358725 ttctaataatggttgagtttgctacaaagaaagtagaagctgagtctggactagcgcccaggctagctgggggtggctccg 41358805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 71 - 166
Target Start/End: Complemental strand, 26278383 - 26278289
Alignment:
Q  71 agctaaaatttctagtaatggttgggtttgctacaaagaaagttggagccgagcctggacactagccgaggctagctgggggtggctccgcccctg 166  Q
    |||||||| |||||||||||| | || ||||| |||||||| ||||||| |||||||| |    ||| ||||||||| ||||||||||||||||||    
T  26278383 agctaaaaattctagtaatggctaggcttgctccaaagaaaattggagctgagcctgggctagtgcccaggctagct-ggggtggctccgcccctg 26278289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 38239540 - 38239494
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatcc 68  Q
    ||||||| |||| ||||||||||||||| |||||||||| |||||||    
T  38239540 caaaatccgcagaaaatgtgtttcctgcagaatttacactaaaatcc 38239494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 47511678 - 47511728
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag 72  Q
    ||||||| |||||||||||||||||| |  |||||| ||||||||||||||    
T  47511678 caaaatccgcaggaaatgtgtttccttcaaaatttatacaaaaatccgcag 47511728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 5e-45; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 22 - 166
Target Start/End: Original strand, 1781056 - 1781207
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag------ctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| |||      ||||||||| |||||||||||||||||||||||||||||||||    
T  1781056 caaaatctgcaggaaatgtgtttcctgaggaatttacacaaaaatccacaggaaaagctaaaatttatagtaatggttgggtttgctacaaagaaagttg 1781155  T
Q  116 gagccgagcctggacactagccgaggctagct-gggggtggctccgcccctg 166  Q
    ||||||| ||||| |||||||| || |||||| |||||||||||||||||||    
T  1781156 gagccgaacctgggcactagcccagactagctggggggtggctccgcccctg 1781207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 22 - 166
Target Start/End: Original strand, 10397826 - 10397977
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag------ctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||||||      |||||| |||| |||||||||||||||||||||||||||||||    
T  10397826 caaaatatgcaggaaatgtgtttcctgcggaatttacacaacaatccgcaggaaaagctaaaaattctcgtaatggttgggtttgctacaaagaaagttg 10397925  T
Q  116 gagccgagcctggacactagccgaggctagct-gggggtggctccgcccctg 166  Q
    |||| |||||||| |||||||| ||||||||| |||||||||||||||||||    
T  10397926 gagctgagcctgggcactagcccaggctagctggggggtggctccgcccctg 10397977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 22 - 166
Target Start/End: Original strand, 23663793 - 23663944
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag------ctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||      |||||| || ||| |||||||||| ||||||||||||||||||    
T  23663793 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaggaaaagctaaaaattatagcaatggttgggcttgctacaaagaaagttg 23663892  T
Q  116 gagccgagcctggacactagccgaggctagct-gggggtggctccgcccctg 166  Q
    ||||||||||||| |||||||| ||||||||| |||||||||||| ||||||    
T  23663893 gagccgagcctgggcactagcccaggctagctggggggtggctcctcccctg 23663944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 22 - 163
Target Start/End: Original strand, 34249047 - 34249195
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag------ctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||      |||||| ||||||||||||||||| ||||||||||||||||||    
T  34249047 caaaatctgcaggaaatgtgtttcctgcagaatttacacaaaaatccgcaggaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttg 34249146  T
Q  116 gagccgagcctggacactagccgaggctagct-gggggtggctccgccc 163  Q
    |||  ||| |||| |||||||| | ||||||| ||||||||||||||||    
T  34249147 gagttgagtctgggcactagcccaagctagctggggggtggctccgccc 34249195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 22 - 166
Target Start/End: Complemental strand, 9696137 - 9695975
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag------------------ctaaaatttctagtaatggttgggtttgcta 103  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| ||||                  |||||| ||||| ||||| ||||| ||||||    
T  9696137 caaaatctgcaggaaatatgtttcctgcggaatttacacaaaaatctgcaggtaaatccgcaggaaaatctaaaaattctaataatgattgggcttgcta 9696038  T
Q  104 caaagaaagttggagccgagcctggacactagccgaggctagctgggggtggctccgcccctg 166  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||    
T  9696037 caaagaaagttggagccgagcctgggcactagcccaggctagctgggggtgactccgcccctg 9695975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 9046945 - 9047111
Alignment:
Q  18 ttgacaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatc------------cgcag------ctaaaatttctagtaatggttgggttt 99  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||            |||||      |||||| ||||||||||||||||  ||    
T  9046945 ttgacaaaatctgcaggaaatgtgtttcctgcggaatctacacaaaaatctacaggtaaatccgcaggaaaagctaaaaattctagtaatggttggactt 9047044  T
Q  100 gctacaaagaaagttggagccgagcctggacactagccgaggctagctgggggtggctccgcccctg 166  Q
     ||||||||||||||| ||| ||| ||||||||||||| ||||||||||||||||||||||||||||    
T  9047045 actacaaagaaagttgaagctgagtctggacactagcccaggctagctgggggtggctccgcccctg 9047111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 22 - 127
Target Start/End: Original strand, 14938944 - 14939055
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgc------agctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||      | |||||| |||||||||||| | ||||||||||||||||| |||    
T  14938944 caaaatctgcaggaaatgtgtttcctgcggaatttacataaaaatcagcataaaaaactaaaagttctagtaatggctaggtttgctacaaagaaaattg 14939043  T
Q  116 gagccgagcctg 127  Q
    |||| |||||||    
T  14939044 gagctgagcctg 14939055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 339416 - 339314
Alignment:
Q  23 aaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgc------agctaaaatttctagtaatggttgggtttgctacaaagaaagttgg 116  Q
    |||||||||||||||||| |||||| |||||||||||||||||||| |      |||||||| || ||||||||| || ||||||||||||||||||| |    
T  339416 aaaatctgcaggaaatgtatttcctacggaatttacacaaaaatccacaggaaaagctaaaagttttagtaatggctgagtttgctacaaagaaagttag 339317  T
Q  117 agc 119  Q
    |||    
T  339316 agc 339314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 2836230 - 2836399
Alignment:
Q  18 ttgacaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgc------------------agctaaaatttctagtaatggttgggttt 99  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||||                  |||||||| |||||| |||||||||||||    
T  2836230 ttgacaaaatctgcaggaaatgtatttcctgcggaatttacacgaaaatccgcagatcaatccgcagaaaaagctaaaagttctaggaatggttgggttt 2836329  T
Q  100 gctacaaagaaagttggagccgagcctggac-actagccgaggctagctgggggtggctccgcccctgtgt 169  Q
    ||||||||||||||||||||  | |||| || | |  |||| | |||||||||||||||||||||||||||    
T  2836330 gctacaaagaaagttggagctaaacctgaactagtgcccga-gttagctgggggtggctccgcccctgtgt 2836399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 2941304 - 2941249
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcagctaaa 77  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||    
T  2941304 caaaatctgcaggaaatgtgtttcctgcgaaatttacactaaaatccgcaggtaaa 2941249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 15122125 - 15122070
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcagctaaa 77  Q
    |||||||||||||||||||||||||||| ||||||| ||| |||||||||| ||||    
T  15122125 caaaatctgcaggaaatgtgtttcctgcagaatttagacacaaatccgcaggtaaa 15122070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 128
Target Start/End: Complemental strand, 2960758 - 2960654
Alignment:
Q  30 gcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag------ctaaaatttctagtaatggttgggtttgctacaaagaaagttggagccgag 123  Q
    ||||||||||||||| ||||| |||||||| || |||||||||      |||||| |||||||| ||| |||  |||||||||||||| ||||||| |||    
T  2960758 gcaggaaatgtgttttctgcgaaatttacataataatccgcaggaaaagctaaaagttctagtattggctggacttgctacaaagaaaattggagctgag 2960659  T
Q  124 cctgg 128  Q
    |||||    
T  2960658 cctgg 2960654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 15529028 - 15528973
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcagctaaa 77  Q
    |||||||||||||||||   |||||||||||||||||||||| |||||||| ||||    
T  15529028 caaaatctgcaggaaatacatttcctgcggaatttacacaaacatccgcaggtaaa 15528973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 80 - 166
Target Start/End: Complemental strand, 34188808 - 34188721
Alignment:
Q  80 ttctagtaatggttgggtttgctacaaagaaagttggagccgagcctggacactagccgaggctagctggg-ggtggctccgcccctg 166  Q
    |||||||||||| |||| |||||||||||||||||||||| |||||| | |    ||| |||||||||||| |||| |||||||||||    
T  34188808 ttctagtaatggctgggcttgctacaaagaaagttggagctgagcctcggctagtgcccaggctagctgggaggtgactccgcccctg 34188721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 15528961 - 15528914
Alignment:
Q  71 agctaaaatttctagtaatggttgggtttgctacaaagaaagttggag 118  Q
    |||||||| ||||| ||||||| ||| |||||||||||||||||||||    
T  15528961 agctaaaaattctaataatggtagggcttgctacaaagaaagttggag 15528914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 80 - 166
Target Start/End: Complemental strand, 5582493 - 5582407
Alignment:
Q  80 ttctagtaatggttgggtttgctacaaagaaagttggagccgagcctggacactagccgaggctagctgggggtggctccgcccctg 166  Q
    |||||||||| | || | |||||||||||||||| | ||  |||||||| |    ||| ||||||||||||||||||||||||||||    
T  5582493 ttctagtaatagctgtgcttgctacaaagaaagtagaagttgagcctgggctagtgcccaggctagctgggggtggctccgcccctg 5582407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 5e-42; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 26722968 - 26723134
Alignment:
Q  18 ttgacaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag------------------ctaaaatttctagtaatggttgggttt 99  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||                  ||||||||||||||||||||||| |||    
T  26722968 ttgacaaaatctgcaggaaatgtgtttcctgcggaatttacataaaaatccgcaggtaaatccgtaggaaaagctaaaatttctagtaatggttggattt 26723067  T
Q  100 gctacaaagaaagttggagccgagcctggacactagccgaggctagctgggggtggctccgcccctg 166  Q
    |||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  26723068 gctacaaaaaaagttggagccgagcctggaaactagcccaggctagctgggggtggctccgcccctg 26723134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 71 - 166
Target Start/End: Original strand, 35300529 - 35300625
Alignment:
Q  71 agctaaaatttctagtaatggttgggtttgctacaaagaaagttggagccgagcctggacactagccgaggctagct-gggggtggctccgcccctg 166  Q
    |||||||  ||||||||||||| ||| |||||||||||||||||||||| |||||||| |||||||| ||||||||| |||||||||||||||||||    
T  35300529 agctaaacattctagtaatggtagggcttgctacaaagaaagttggagctgagcctgggcactagcccaggctagctggggggtggctccgcccctg 35300625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 21932809 - 21932924
Alignment:
Q  18 ttgacaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgc------agctaaaatttctagtaatggttgggtttgctacaaagaaa 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || |||      || ||||| || |||||||||||||| ||||||||||||||    
T  21932809 ttgacaaaatctgcaggaaatgtgtttcctgcggaatttacacaaatat-cgcaggaaaagttaaaagttttagtaatggttgggcttgctacaaagaaa 21932907  T
Q  112 gttggagccgagcctgg 128  Q
    |||||||  ||||||||    
T  21932908 gttggagttgagcctgg 21932924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 71 - 166
Target Start/End: Original strand, 41759709 - 41759804
Alignment:
Q  71 agctaaaatttctagtaatggttgggtttgctacaaagaaagttggagccgagcctggacactagccgaggctagctgggggtggctccgcccctg 166  Q
    |||||||| |||||||||||| |||| |||||||||||||||||||||| |||||||| |    ||| ||||||||||||||||||||||||||||    
T  41759709 agctaaaagttctagtaatggctgggcttgctacaaagaaagttggagctgagcctgggctagtgcccaggctagctgggggtggctccgcccctg 41759804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 815019 - 815131
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag------ctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    ||||||||||| ||||||| ||| |||||||||||||||||||||||| ||      |||||| |||||||||||| | | |||||||||||||||||||    
T  815019 caaaatctgcaagaaatgtattttctgcggaatttacacaaaaatccgtaggaaaagctaaaagttctagtaatggctagatttgctacaaagaaagttg 815118  T
Q  116 gagccgagcctgg 128  Q
    |||| ||||||||    
T  815119 gagctgagcctgg 815131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 28694074 - 28694129
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcagctaaa 77  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28694074 caaaatctgcaggaaatgtgtttcctgcagaatttacacaaaaatccgcagctaaa 28694129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 21688196 - 21688146
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag 72  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21688196 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag 21688146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 22 - 166
Target Start/End: Complemental strand, 30852424 - 30852275
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgc------agctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    ||||||||| |||||||||||||||||||||||||||| |||| |||||      || ||||| |||||||||||| || | || ||||||||||| |||    
T  30852424 caaaatctgaaggaaatgtgtttcctgcggaatttacataaaattccgcaggaaaagttaaaagttctagtaatggctgagcttactacaaagaaaattg 30852325  T
Q  116 gagccgagcctggacactagccgaggctagctgggggtggctccgcccctg 166  Q
    |||| |||||||| |    ||| ||||||||| |||||||||| |||||||    
T  30852324 gagctgagcctgggctagtgcccaggctagct-ggggtggctctgcccctg 30852275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 22 - 166
Target Start/End: Original strand, 5991442 - 5991602
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaa---------aatccgcag------ctaaaatttctagtaatggttgggtttgctacaa 106  Q
    |||||||||||||||||||||||||||||||||||||| |||         |||||||||      |||||| |||||||||||| |||| |||||||||    
T  5991442 caaaatctgcaggaaatgtgtttcctgcggaatttacataaaccgcaggtaaatccgcaggaaaaactaaaagttctagtaatggctgggcttgctacaa 5991541  T
Q  107 agaaagttggagccgagcctggacactagccgaggctagct-gggggtggctccgcccctg 166  Q
    ||||| ||||||  |||||||| |    ||| ||||||||| |||||||||||||||||||    
T  5991542 agaaaattggagttgagcctgggctagtgcccaggctagctggggggtggctccgcccctg 5991602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 7873242 - 7873297
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcagctaaa 77  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||    
T  7873242 caaaatctgcaggaaatgtgtttcctgcggaatttacataaaaacccgcaggtaaa 7873297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 42439608 - 42439710
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag------ctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    |||||||||||| |||||||||||||||| ||||||||||||| || ||||      |||||| |||||||||||| || |  |||||||||||||||||    
T  42439608 caaaatctgcagaaaatgtgtttcctgcgaaatttacacaaaactctgcaggtaaaactaaaagttctagtaatggctgagcatgctacaaagaaagttg 42439707  T
Q  116 gag 118  Q
    |||    
T  42439708 gag 42439710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 41759642 - 41759688
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatcc 68  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  41759642 caaaatctgcaggaaatgtgtttcctgcggaatttacaccaaaatcc 41759688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 38129027 - 38129083
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcagctaaaa 78  Q
    |||||| ||||||||||||||||||| | |||||||||||||||||||||| |||||    
T  38129027 caaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatccgcaggtaaaa 38129083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 3012391 - 3012336
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcagctaaa 77  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||| |||| ||||    
T  3012391 caaaatctgcaggaagtgtgtttcctgcggaatgtacacaaaaatcggcaggtaaa 3012336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 23704503 - 23704558
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcagctaaa 77  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||| ||| ||||    
T  23704503 caaaatctgcaggaaatgtgttttcggcggaatttacacaaaaatccacaggtaaa 23704558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 35300462 - 35300512
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag 72  Q
    |||||||||||||||||   |||||||||||||||||||||||||||||||    
T  35300462 caaaatctgcaggaaatacatttcctgcggaatttacacaaaaatccgcag 35300512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 38991194 - 38991244
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag 72  Q
    |||||||||||||||||||||||||  ||||||||| ||||||||||||||    
T  38991194 caaaatctgcaggaaatgtgtttccaacggaatttatacaaaaatccgcag 38991244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 3012324 - 3012280
Alignment:
Q  71 agctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||    
T  3012324 agctaaaagttctagtaatggttgggcttgctacaaagaaagttg 3012280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 7873309 - 7873357
Alignment:
Q  71 agctaaaatttctagtaatggttgggtttgctacaaagaaagttggagc 119  Q
    |||||||| ||||||||||||||||| |||||||||||||| |||||||    
T  7873309 agctaaaagttctagtaatggttgggcttgctacaaagaaaattggagc 7873357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 22206709 - 22206745
Alignment:
Q  23 aaaatctgcaggaaatgtgtttcctgcggaatttaca 59  Q
    |||||||||||||||||||||||||||||||||||||    
T  22206709 aaaatctgcaggaaatgtgtttcctgcggaatttaca 22206745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 22228030 - 22227994
Alignment:
Q  23 aaaatctgcaggaaatgtgtttcctgcggaatttaca 59  Q
    |||||||||||||||||||||||||||||||||||||    
T  22228030 aaaatctgcaggaaatgtgtttcctgcggaatttaca 22227994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 19377476 - 19377421
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcagctaaa 77  Q
    ||||||||||||||||||| |||||| |||||||| |||||| |||||||| ||||    
T  19377476 caaaatctgcaggaaatgtatttccttcggaatttccacaaacatccgcaggtaaa 19377421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 71 - 163
Target Start/End: Original strand, 22206775 - 22206868
Alignment:
Q  71 agctaaaatttctagtaatggttgggtttgctacaaagaaagttggagccgagcctggacactagccgaggctagctggg-ggtggctccgccc 163  Q
    |||||||| || ||||||||  |||| |||||||||||||| ||||||| |||||||| |    ||| |||||||||||| |||||||||||||    
T  22206775 agctaaaaattatagtaatgcctgggcttgctacaaagaaaattggagctgagcctgggctagtgcccaggctagctgggtggtggctccgccc 22206868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 71 - 163
Target Start/End: Complemental strand, 22227964 - 22227871
Alignment:
Q  71 agctaaaatttctagtaatggttgggtttgctacaaagaaagttggagccgagcctggacactagccgaggctagctggg-ggtggctccgccc 163  Q
    |||||||| || ||||||||  |||| |||||||||||||| ||||||| |||||||| |    ||| |||||||||||| |||||||||||||    
T  22227964 agctaaaaattatagtaatgcctgggcttgctacaaagaaaattggagctgagcctgggctagtgcccaggctagctgggtggtggctccgccc 22227871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 25688212 - 25688249
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttaca 59  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  25688212 caaaatctgcaggaaatatgtttcctgcggaatttaca 25688249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 4843385 - 4843338
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccg 69  Q
    ||||||||||| |||||||||||| |||||||| |||||||| |||||    
T  4843385 caaaatctgcatgaaatgtgtttcatgcggaatgtacacaaatatccg 4843338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 78; Significance: 5e-36; HSPs: 2)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 22 - 166
Target Start/End: Complemental strand, 11605 - 11456
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcagctaaa-----atttctagtaatggttgggtttgctacaaagaaagttgg 116  Q
    ||||||||||||||||||  ||| ||||||||||||||||| |||||||||  |||     | ||||||||||||| ||| |||||||||||||||||||    
T  11605 caaaatctgcaggaaatgcattttctgcggaatttacacaataatccgcaggaaaagaaaaaattctagtaatggtagggcttgctacaaagaaagttgg 11506  T
Q  117 agccgagcctggacactagccgaggctagctgggggtggctccgcccctg 166  Q
    ||| |||||||| |||||| | ||||||||||||||||||||||||||||    
T  11505 agctgagcctgggcactagtccaggctagctgggggtggctccgcccctg 11456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 6992 - 6889
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag------ctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    ||||||||||||||||||  |||||| |||||||||||||| |||||||||      |||||| ||||||||||||| ||| ||||||||||||||||||    
T  6992 caaaatctgcaggaaatgcatttccttcggaatttacacaataatccgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttg 6893  T
Q  116 gagc 119  Q
    ||||    
T  6892 gagc 6889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 125
Target Start/End: Complemental strand, 1777 - 1668
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccg------cagctaaaatttctagtaatggttgggtttgctacaaagaaagttg 115  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||       || ||||| || || ||||| ||||| || |||||||||||||||    
T  1777 caaaatctgcaggaaatgtgtttcctgcgaaatttacacaaaaatccgaaggaaaaggtaaaaattttaataatgattgggctttctacaaagaaagttg 1678  T
Q  116 gagccgagcc 125  Q
    |||| |||||    
T  1677 gagctgagcc 1668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0638 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 4192 - 4137
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcagctaaa 77  Q
    |||||||||||||||||||||||||| ||||||||||| ||| |||||||| ||||    
T  4192 caaaatctgcaggaaatgtgtttcctacggaatttacataaacatccgcaggtaaa 4137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0638; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 71 - 128
Target Start/End: Complemental strand, 4125 - 4068
Alignment:
Q  71 agctaaaatttctagtaatggttgggtttgctacaaagaaagttggagccgagcctgg 128  Q
    |||||||| |||||||||||| |||| |||||||||||||| ||||||| ||||||||    
T  4125 agctaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctgg 4068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 109333 - 109388
Alignment:
Q  22 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcagctaaa 77  Q
    |||||||||||| | |||||||| ||||||||||||||||||||| ||||| ||||    
T  109333 caaaatctgcagaacatgtgttttctgcggaatttacacaaaaattcgcaggtaaa 109388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 109403 - 109459
Alignment:
Q  74 taaaatttctagtaatggttgggtttgctacaaagaaagttggagccgagcctggac 130  Q
    ||||| ||||||||||   |||| |||||||||||||||||||||| ||||||||||    
T  109403 taaaagttctagtaataactggggttgctacaaagaaagttggagctgagcctggac 109459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University