View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17544_high_1 (Length: 444)
Name: NF17544_high_1
Description: NF17544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17544_high_1 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 17 - 444
Target Start/End: Complemental strand, 41744170 - 41743745
Alignment:
| Q |
17 |
tgatgatgagaatgacgacgtctaattatgatgatgatgaaaataacaatgtttactctttgatgacggatgtcgaagaatatgtttgtcttgacattgt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||| |
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| T |
41744170 |
tgatgatgagaatgacgacgtctaattatgatgatgatgaaaataacaatgtttactctttgatgacg-atga-gaataatatgtttgtcttgacattgt |
41744073 |
T |
|
| Q |
117 |
acataatagggagagttttgcattaatatgtgaattattgatgatgtgaagatgcgtattacttgatgagtttgtctctatggatgcatatagagttgag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
41744072 |
acataatagggagagttttgcattaatatgtgaattattgatgatgtgaagatgtgtattacttgatgagtttgtctctatacatgcatatagagtcgag |
41743973 |
T |
|
| Q |
217 |
tctaggaaaacgaagatgaaatggagacaaatgtaagtccaataacacatctctatcaacaatatatgatgacaatatgtgtggtaccacgttcatatat |
316 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
41743972 |
tctaggaaaacgaagatgaaatgaagacaaatgtaagtccagtaacacatctctatcaacaatatatgatgacgatatgtgtgataccacgttcatatat |
41743873 |
T |
|
| Q |
317 |
gttttaagatgaagtccatctgcatatggatagagttgcactgctaaagtataatttaaaaatttacgttattaagtgataaaatgttgagtttataaca |
416 |
Q |
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| T |
41743872 |
gtcttaagatgaagtccatctgcatatggatagagtcgcactgctaaagtataatttaaaaatttacgttattaagtgataaaatgttgagtttataaca |
41743773 |
T |
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| Q |
417 |
aactttttattaaatatattctttctta |
444 |
Q |
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| T |
41743772 |
tactttttattaaatatattctttctta |
41743745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 17 - 343
Target Start/End: Complemental strand, 24622312 - 24621979
Alignment:
| Q |
17 |
tgatgatgagaatgacgacgtctaattatgatgatgatgaaaataacaatgtttactctttgatgacg--gatgtcgaaga--atatgtttgtcttgaca |
112 |
Q |
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||||||||||||||| ||||| |||||||||||||||||| | | | |||||||| ||||||||||| || || || ||||||||| ||||| |
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| T |
24622312 |
tgatgatgagaatgatgacgtgtaattatgatgatgatgagattgatgatgtttaccctttgatgacgatgagagtgatgaatatatgtttgccttgatg |
24622213 |
T |
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| Q |
113 |
ttgtacataatagggag---agttttgcattaatatgtgaattattgatgatgtgaagatgcgtattacttgatgagtttgtctctatggatgcatatag |
209 |
Q |
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| T |
24622212 |
ttatgcataataggaaggctcttgttgcattaatatgtgaattgttgatgatgtgaaaatgtgtattacttgatgagtcggtcttcatgcatgcatatag |
24622113 |
T |
|
| Q |
210 |
agttgagtctaggaaaacgaagatgaaatggagacaaatgtaagtccaataacacatctctatcaacaatatatgatgacaatatgtgtggtaccacgtt |
309 |
Q |
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||||||||||||||||| ||||||||| | |||| | ||||| |||| ||||| |||||| ||||||| ||||||||| ||| ||||||||| || || |
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| T |
24622112 |
agttgagtctaggaaaaagaagatgaagagaagacgagtgtaaatccagtaacatatctctgacaacaatttatgatgacgataggtgtggtactacatt |
24622013 |
T |
|
| Q |
310 |
catatatgttttaagatgaagtccatctgcatat |
343 |
Q |
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||||||||| || |||| |||| || ||||||| |
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| T |
24622012 |
catatatgtcataggatggagtcaatatgcatat |
24621979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 101 - 332
Target Start/End: Original strand, 34635732 - 34635965
Alignment:
| Q |
101 |
tttgtcttgacattgtacataatagggagagttttgcattaata-tgtgaattattgatgatgtgaagatgcgtattacttgatgagtttgtctctatgg |
199 |
Q |
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|||||||||| | ||||||||||| | |||||| ||||| ||| |||||||| |||||||| ||| | || || ||||||||||||||||||| ||| |
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| T |
34635732 |
tttgtcttgataatgtacataataagaagagtt--gcatttataatgtgaattgttgatgatatgatggtgtttaatacttgatgagtttgtctccatgc |
34635829 |
T |
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| Q |
200 |
atgcatatagagttgagtctagg--aaaacgaagatgaaatggagacaaatgtaagtccaataacacatctct-atcaacaatatatgatgac-aatatg |
295 |
Q |
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|| |||||||||||| ||||||| |||| || ||||||||| |||| |||||||||||| |||||||||||| | ||||||| |||||||| || | | |
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| T |
34635830 |
atacatatagagttgtgtctaggaaaaaatgaggatgaaatgaagacgaatgtaagtccagtaacacatctctgacaaacaata-atgatgacgaaaagg |
34635928 |
T |
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| Q |
296 |
tgtggtaccacgttcatatatgttttaagatgaagtc |
332 |
Q |
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| T |
34635929 |
tgtggtaccacatttatataggtcttaggatgaagtc |
34635965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 174 - 268
Target Start/End: Original strand, 18785371 - 18785465
Alignment:
| Q |
174 |
attacttgatgagtttgtctctatggatgcatatagagttgagtctaggaaaacgaagatgaaatggagacaaatgtaagtccaataacacatct |
268 |
Q |
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| T |
18785371 |
attacttgatgagtttgtctccatgcatgcatataaagttgagtttaggaaaatgaagatgaaatgaagacgaatgtaagtccagtaacacatct |
18785465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 187
Target Start/End: Complemental strand, 22521627 - 22521540
Alignment:
| Q |
101 |
tttgtcttgacattgtacataatagggagagttttgcattaatatgtgaattattgatgatgtgaagatgcgtat-tacttgatgagt |
187 |
Q |
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| T |
22521627 |
tttgtcttgatgtcgtgcataataggaagagtcttgcattgatatgtgaattgttgatcatgtgaagacgtgtatatacttgatgagt |
22521540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 101 - 212
Target Start/End: Complemental strand, 19019729 - 19019617
Alignment:
| Q |
101 |
tttgtcttgacattgtacataatagggagagttttgcattaatatgtgaattattgatgatgtgaagatgcgtat-tacttgatgagtttgtctctatgg |
199 |
Q |
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|||||||||| |||| ||||||||| | ||| ||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||| |||| || |
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| T |
19019729 |
tttgtcttgatgttgtgcataataggaatagtcttgcattaatatgtgaattgttgatgatgtgaagatgtgtatatacttgatgagttagtcttcatac |
19019630 |
T |
|
| Q |
200 |
atgcatatagagt |
212 |
Q |
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||||||||||||| |
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| T |
19019629 |
atgcatatagagt |
19019617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 118 - 222
Target Start/End: Original strand, 33499706 - 33499810
Alignment:
| Q |
118 |
cataatagggagagttttgcattaatatgtgaattattgatgatgtgaagatgcgtattacttgatgagtttgtctctatggatgcatatagagttgagt |
217 |
Q |
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|||| |||||||||| | ||||||||||||||||| ||||||||||| | || |||||||||| |||| |||||| ||| |||||||||||||||| | |
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| T |
33499706 |
catattagggagagtctagcattaatatgtgaattgttgatgatgtgcaaatatgtattacttgtcgagtatgtctccatgcatgcatatagagttgatt |
33499805 |
T |
|
| Q |
218 |
ctagg |
222 |
Q |
| |
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||||| |
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| T |
33499806 |
ctagg |
33499810 |
T |
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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 137 - 234
Target Start/End: Original strand, 43155284 - 43155380
Alignment:
| Q |
137 |
cattaatatgtgaattattgatgatgtgaagatgcgtattacttgatgagtttgtctctatggatgcatatagagttgagtctaggaaaacgaagatg |
234 |
Q |
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|||||||||||||||| |||||||||||||| | |||||||||| ||||| |||||| || |||||| ||| |||||| ||||||||| ||||||| |
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| T |
43155284 |
cattaatatgtgaattgttgatgatgtgaaggcgtgtattacttgttgagtctgtctccat-catgcatttagggttgagcctaggaaaaagaagatg |
43155380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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