View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17544_high_10 (Length: 374)

Name: NF17544_high_10
Description: NF17544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17544_high_10
NF17544_high_10
[»] chr6 (3 HSPs)
chr6 (5-352)||(17075396-17075743)
chr6 (120-352)||(11053470-11053702)
chr6 (12-124)||(11064036-11064148)
[»] chr8 (2 HSPs)
chr8 (12-352)||(17683923-17684263)
chr8 (9-172)||(36159902-36160065)
[»] chr4 (2 HSPs)
chr4 (6-259)||(10559739-10559992)
chr4 (282-353)||(10558419-10558490)
[»] chr1 (1 HSPs)
chr1 (5-352)||(26741546-26741893)


Alignment Details
Target: chr6 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 5 - 352
Target Start/End: Complemental strand, 17075743 - 17075396
Alignment:
Q  5 cacaaccttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcgaagaaaccgcc 104  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || ||||| ||||| ||| ||| |||||||||| |     
T  17075743 cacaaccttctcatttccatgcactgccacccaattaacccaatcattgttaacggaccccgatgacgaactaccatccgaagctcccgaagaaaccact 17075644  T
Q  105 ctaaccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcaaaacggcggcccggtctttgctgggcaaccgcgcca 204  Q
     | |||||||||||||| || ||||| ||||||||||||||| ||||||||||||| ||||| ||||| | ||  || |||||||| |||| ||||||||    
T  17075643 tttaccgcctttttaaggcgttccgagccttgtaattttctcaatttagattttaagatgtgtaaaactgaggaacgatctttgctaggcagccgcgcca 17075544  T
Q  205 ccttcttcaaactaaataccgaatgccgcaaaattccattcactttcttcctctttataactattgaactggatttagcaaaaggccgcaccactttctt 304  Q
    |||| |||| |||||  ||||| || ||||||||||| ||||||||||||| |||  |||| || | ||||||||  ||||  |||||||||||||||||    
T  17075543 cctttttcagactaatcaccgagtgtcgcaaaattccgttcactttcttccgcttgttaacgatggtactggattgtgcaatgggccgcaccactttctt 17075444  T
Q  305 aaccttctttcttgtcgaagaaataacaccagcgactccatgatgatg 352  Q
    ||||||||| |||| ||||||||||||||||||| | |||| ||||||    
T  17075443 aaccttcttccttgccgaagaaataacaccagcgtcaccattatgatg 17075396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 120 - 352
Target Start/End: Complemental strand, 11053702 - 11053470
Alignment:
Q  120 agacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcaaaacggcggcccggtctttgctgggcaaccgcgccaccttcttcaaactaa 219  Q
    ||||| || |||||||||||||| ||||||||||||||||| || || |||| || || ||| |||||||| ||||||||||||||||| ||||||||||    
T  11053702 agacggtctgaaccttgtaatttcctcgatttagattttaagatatgtaaaatggtggaccgatctttgctaggcaaccgcgccacctttttcaaactaa 11053603  T
Q  220 ataccgaatgccgcaaaattccattcactttcttcctctttataactattga-actggatttagcaaaaggccgcaccactttcttaaccttctttcttg 318  Q
      ||||| ||||||| ||  ||||||||||||||||  ||  |  | |  || || |||||  |||| ||||||||||||||||||||||||||||||||    
T  11053602 tcaccgagtgccgcagaaccccattcactttcttccgattgtttgc-acagataccggattgggcaataggccgcaccactttcttaaccttctttcttg 11053504  T
Q  319 tcgaagaaataacaccagcgactccatgatgatg 352  Q
     ||| ||||||||||||||| | |||||||||||    
T  11053503 ccgatgaaataacaccagcgtcaccatgatgatg 11053470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 12 - 124
Target Start/End: Complemental strand, 11064148 - 11064036
Alignment:
Q  12 ttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcgaagaaaccgccctaaccg 111  Q
    ||||||||| ||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| || || ||||||  ||| |||||| || |||||     
T  11064148 ttctcattctcatgcactgccacccaattgacccaatcattattaaccgatcccgacgaggaactaccttccgaaacttccgaggaaaccaccttaacca 11064049  T
Q  112 cctttttaagacg 124  Q
    |||||||||||||    
T  11064048 cctttttaagacg 11064036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 12 - 352
Target Start/End: Original strand, 17683923 - 17684263
Alignment:
Q  12 ttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcgaagaaaccgccctaaccg 111  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| || || ||||||| ||| |||||| || | |||     
T  17683923 ttctcattcccatgcactgccacccaattaacccaatcattattaaccgacctcgacgaggaactaccttccgaaactcccgaggaaaccacctttacca 17684022  T
Q  112 cctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcaaaacggcggcccggtctttgctgggcaaccgcgccaccttctt 211  Q
    ||||||||||||| || |||||||||||||| ||||||||||||||||| || || ||||||| || ||| |||||||| |||||| |||||||||| ||    
T  17684023 cctttttaagacggtctgaaccttgtaatttcctcgatttagattttaagatatgtaaaacggtggaccgatctttgctaggcaactgcgccaccttttt 17684122  T
Q  212 caaactaaataccgaatgccgcaaaattccattcactttcttcc---tcttt--ataactattgaactggatttagcaaaaggccgcaccactttcttaa 306  Q
    ||||||||  ||||| ||||||||||  ||||||||||||||||   | |||  | || ||| | | ||||      || |||||||||||||||| | |    
T  17684123 caaactaatcaccgagtgccgcaaaaccccattcactttcttccgtttgtttgcacaaatatcggattgga-----aaataggccgcaccactttcctga 17684217  T
Q  307 ccttctttcttgtcgaagaaataacaccagcgactccatgatgatg 352  Q
    |||||||||||| ||| ||||||||||||||| | |||||||||||    
T  17684218 ccttctttcttgccgatgaaataacaccagcgtcaccatgatgatg 17684263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 36159902 - 36160065
Alignment:
Q  9 accttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcgaagaaaccgccctaa 108  Q
    ||||||||||||||||||||  ||||  ||||||||||||| |||||||| || |  || || |||||   ||||||| ||| ||||||  || || | |    
T  36159902 accttctcattcccatgcacaaccacaaaattaacccaatcgttgttaactgaacatgaagaagaacttttatctgaagctcccgaagaccccaccttca 36160001  T
Q  109 ccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcaaaac 172  Q
    |||||||||| ||||||||||| || ||||||||||| | ||||||||||| ||||||||||||    
T  36160002 ccgcctttttcagacgatccgacccatgtaattttctagctttagattttagaatgtgcaaaac 36160065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 126; Significance: 7e-65; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 6 - 259
Target Start/End: Complemental strand, 10559992 - 10559739
Alignment:
Q  6 acaaccttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcgaagaaaccgccc 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||| || ||||| ||||||||| ||| |||||||||| ||     
T  10559992 acaaccttctcattcccatgcactgccacccaattaacccaatcattgttatctgaacccgaggaagaactaccatctgaagctcccgaagaaaccacct 10559893  T
Q  106 taaccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcaaaacggcggcccggtctttgctgggcaaccgcgccac 205  Q
    | ||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||| ||||||| ||   | |||||||| |||| | || ||||    
T  10559892 ttaccgcctttttgagacgatctgatccttgtaattttctcgatttagattttaagatgtgtaaaacggtggattgatctttgctaggcagctgccccac 10559793  T
Q  206 cttcttcaaactaaataccgaatgccgcaaaattccattcactttcttcctctt 259  Q
    ||| ||||||||||  ||||| ||||||| ||  ||||||||||||||||||||    
T  10559792 ctttttcaaactaatcaccgagtgccgcagaaacccattcactttcttcctctt 10559739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 282 - 353
Target Start/End: Complemental strand, 10558490 - 10558419
Alignment:
Q  282 gcaaaaggccgcaccactttcttaaccttctttcttgtcgaagaaataacaccagcgactccatgatgatgt 353  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||    
T  10558490 gcaataggccgcaccactttcttaaccttctttcttgccgaagaaataacaccagcgtcaccatgatgatgt 10558419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 5 - 352
Target Start/End: Original strand, 26741546 - 26741893
Alignment:
Q  5 cacaaccttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcgaagaaaccgcc 104  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |||||||| || ||||| || ||||| ||||| ||| ||| |||||||||| ||    
T  26741546 cacaaccttctcattcccatgcacttccacccaattaacccaatcgttgttaactgaacccgaggaagaactaccatccgaagctcccgaagaaaccacc 26741645  T
Q  105 ctaaccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcaaaacggcggcccggtctttgctgggcaaccgcgcca 204  Q
    || || ||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||| ||||| | ||  || ||||||| ||||| |||  |||    
T  26741646 cttacagccttcttaagacgatccgatccttgtaattttctcgacttagattttaagatgtgtaaaactgtggaacgatctttgcagggcagccgatcca 26741745  T
Q  205 ccttcttcaaactaaataccgaatgccgcaaaattccattcactttcttcctctttataactattgaactggatttagcaaaaggccgcaccactttctt 304  Q
    |||| ||||||||||  ||||  | ||| || ||  ||||||||||||||| |||  |||| |  | ||  |||| ||||| |||| || ||||| ||||    
T  26741746 cctttttcaaactaatcaccgggttccgtaagatctcattcactttcttccgcttgttaacaaaggtacatgattgagcaataggctgcgccactctctt 26741845  T
Q  305 aaccttctttcttgtcgaagaaataacaccagcgactccatgatgatg 352  Q
    ||||||||| || | ||| ||||||||||||||  | |||||||||||    
T  26741846 aaccttcttcctagccgatgaaataacaccagcatcaccatgatgatg 26741893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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