View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17544_high_12 (Length: 355)
Name: NF17544_high_12
Description: NF17544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17544_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 52108785 - 52109113
Alignment:
| Q |
1 |
atcgttaaccctaatttctgaataaactcagcacgttccctcatgacttcaacggttgaaggaagctccaaatcctgcaattcatcaggaataattccca |
100 |
Q |
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| T |
52108785 |
atcgttaaccctaatttctgaataaactcaacacgttccctcatgacttcaacggttgaaggaagctccaaatcctgcaattcatcaggaataattccca |
52108884 |
T |
|
| Q |
101 |
aacccttgagataatcgaagatgatgacccgcgaaacgagtttctctttgcggccttgaatcacaccccatgtaacagtaggcatctcgtattcgggaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
52108885 |
aacccttgagataatcgaagatgatgacccgcgaaacgagtttctctttgcggccttgaatcacaccccatgtaacagtaggcatctcgtattccggaaa |
52108984 |
T |
|
| Q |
201 |
tttggaatcttgggttccatagagattgaatagtaaaaccctaaaattgtttgaaattgtttggggatttggaagtggatttggatttaattggtgagaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
52108985 |
tttggaatcttgggttccatagagattgaatagtaaaaccctaaaattgtttgaaa---tttggggatttggaagtggatttggatttaattggtgagaa |
52109081 |
T |
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| Q |
301 |
attagcttagaaacattaacattgcgtgatga |
332 |
Q |
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| T |
52109082 |
attagcttggaaacattaacattgcgtgatga |
52109113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 44520057 - 44520314
Alignment:
| Q |
1 |
atcgttaaccctaatttctgaataaactcagcacgttccctcatgacttcaacggttgaaggaagctccaaatcctgcaattcatcaggaataattccca |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44520057 |
atcgttaaccctaatttctgaataaactcaacacgttccctcatgacttcaacggttgaaggaagctccaaatcctgcaattcatcaggaataattccca |
44520156 |
T |
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| Q |
101 |
aacccttgagataatcgaagatgatgacccgcgaaacgagtttctctttgcggccttgaatcacaccccatgtaacagtaggcatctcgtattcgggaaa |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44520157 |
aacccttgagataatcgaagatgatgaccctcgaaacgagtttctctttgcgaccttgaatcacaccccatgtaacagtaggcatctcgtattcaggaaa |
44520256 |
T |
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| Q |
201 |
tttggaatcttgggttccatagagattgaatagtaaaaccctaaaattgtttgaaatt |
258 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
44520257 |
tttggaatcttgggttccatagagattgaagaataaaaccctaaaattgtttgaaatt |
44520314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 44520337 - 44520388
Alignment:
| Q |
265 |
ggatttggaagtggatttggatttaattggtgagaaattagcttagaaacat |
316 |
Q |
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|||| |||||||| |||||||| ||||||||| ||||||||||||||||||| |
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| T |
44520337 |
ggatgtggaagtgcatttggatataattggtgtgaaattagcttagaaacat |
44520388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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