View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17544_high_2 (Length: 432)
Name: NF17544_high_2
Description: NF17544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17544_high_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 30 - 432
Target Start/End: Complemental strand, 47038435 - 47038034
Alignment:
| Q |
30 |
cttacatcactccggtagctgctgctcgtgcctacgacaccgccgtattctatttaagaggtcctacggctcgtcttaatttccccgaattattgctcga |
129 |
Q |
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| T |
47038435 |
cttacatcactccggtagctgctgctcgtgcctacgacaccgccgtattctatttaagaggtcctacggctcgtcttaatttccccgaattattgctcga |
47038336 |
T |
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| Q |
130 |
agacgacgaagaaaacaacgacggttctattcagcaaggtaacatgtctgctgatttaatacgcaaaaaagctaccaaagtcggtgctagagttgatgct |
229 |
Q |
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| T |
47038335 |
agacgacgaagaaaacaaggacggttctattcagcaaggtaacatgtctgctgatttaatacgcaaaaaagctaccaaagtcggtgctagagttgatgct |
47038236 |
T |
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| Q |
230 |
cttcaagcggctcttgaagcttcttctcgttctgattccgatcaattcaacgctgatgtgaaacctgatttgaacaagtttccagaacctgatgatgtcc |
329 |
Q |
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| T |
47038235 |
cttcaagcggctcttcaagcttcttctcgttctgattccgatcaattcaacgctgatgtgaaacctgatttgaacaagtttccagaacctgaagat-tat |
47038137 |
T |
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| Q |
330 |
atctcattgttcactcagaggtttaatattattgatatgatacttagtttctctctgtaatctttaatatccatcatctattaatcaacccaatattttg |
429 |
Q |
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| T |
47038136 |
taatgctttttcacttagaggtttaatattattgatatgatacttagtttctctctgtaatctttaatatccatcatctattaatcaacccaatattttg |
47038037 |
T |
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| Q |
430 |
tta |
432 |
Q |
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| T |
47038036 |
tta |
47038034 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 6026845 - 6026885
Alignment:
| Q |
197 |
aaagctaccaaagtcggtgctagagttgatgctcttcaagc |
237 |
Q |
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| T |
6026845 |
aaagctactgaagttggtgctagagttgatgctcttcaagc |
6026885 |
T |
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