View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17544_high_20 (Length: 324)
Name: NF17544_high_20
Description: NF17544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17544_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 25011408 - 25011720
Alignment:
| Q |
1 |
aagaaacatagtagatcgttgtcttgctacaaaaagattgtaaacaaattccactaagctggtgaaactagtatatctgaaa-cacgttgctttgtcaaa |
99 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
25011408 |
aagaaacatagtagattgttgtcttgctacaaaaagattgtaaacaaattccactaagctggtgaaactagtatatctgaaaacacgttgctttgtcaaa |
25011507 |
T |
|
| Q |
100 |
ttatcgtttcgtgtaagtgctatacactattcgaagaattccacaggattgaagagtaagtttgaagagaaattattgaaaccgtcaagttgagtactca |
199 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25011508 |
ttatcgtttcgaaaaagtgctatacactattcgaagaattccacaggattgaagagtaagtttgaagagaaattattgaaaccgtcaagttgagtactca |
25011607 |
T |
|
| Q |
200 |
cagagtgaagaatccctttggttgtaacatcaaatgcacctgcagtaccaccagcagcactgatccagtcaacgatcctctgcctgtgtgcatcttgatg |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25011608 |
cagagtgaagaatccctttggttgtaacatcaaatgcacctgcagtaccaccagcagcactgatccagtcaacgatcctctgcctgtgtgcatcttgatt |
25011707 |
T |
|
| Q |
300 |
atg-tccatctca |
311 |
Q |
| |
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||| ||||||||| |
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| T |
25011708 |
atgatccatctca |
25011720 |
T |
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