View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17544_high_4 (Length: 406)
Name: NF17544_high_4
Description: NF17544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17544_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 197 - 376
Target Start/End: Original strand, 32830089 - 32830268
Alignment:
| Q |
197 |
aataaaactaattctaccattcttaagcttactatgaaattcaagaatcggtattccctcggtagccaaaatttcacattcacatagtcaccgaaaaagt |
296 |
Q |
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| T |
32830089 |
aataaaactaattctaccattcttaagcttactatgaaattcaagaatcggtattccctcggtagccaaaatttcacattcacatagtcaccgaaaaagt |
32830188 |
T |
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| Q |
297 |
gactgttgaatcgagatcagacgatgcagatttcaaaatcagaatcttggcaattctagggaatttggtttcgagatttc |
376 |
Q |
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| T |
32830189 |
gactgttgaatcgagatcagacgatgcagatttcaaaataagaatgttggcaattctagggaattttgtttcgagatttc |
32830268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 30 - 180
Target Start/End: Original strand, 32829948 - 32830098
Alignment:
| Q |
30 |
gaaatatggaagcaccaaattccaagcaatccatgtggtccaatgtatcaaaccaatccaatttcttgccttagcagccaaaacaatgtatcaaacttnn |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32829948 |
gaaatatggaagcaccaaattccaagcaatccatgtggtccaatgtatcaaaccaatccaatttcttgccttagcagccaaaacaatgtatcaaacttaa |
32830047 |
T |
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| Q |
130 |
nnnnnnnnnnnttgcatttacatgtctattcctttcacagcaataaaacta |
180 |
Q |
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| T |
32830048 |
aaaatcaaaaattgcatttacatgtctattcctttcacagcaataaaacta |
32830098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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