View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17544_high_6 (Length: 384)
Name: NF17544_high_6
Description: NF17544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17544_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 50 - 332
Target Start/End: Original strand, 1820775 - 1821058
Alignment:
| Q |
50 |
cggagaaccatcaccggcatgacaacaacatttttgtcttgtttctcgagttcttcaacacgttctttaagttgtttcacataatcaattgcttctcgaa |
149 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1820775 |
cggagaaccatcaccggcgtgacaccaacatttttgtcttgtttctcgagctcttcaacatgttctttaagttgtttcacataatcaatcgcttctcgaa |
1820874 |
T |
|
| Q |
150 |
gtattgaagccttgtccatctataaagaaggaatcgtaaaattttaatattataata-ttcttaaataagtaaatgattgaacttaatggttaataaact |
248 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1820875 |
gtaatgaagccttgtccatctataaagaaggaatcgtaaaattttaatattataatatttcttaaataagtaaatgattgaacttaatggttaataaact |
1820974 |
T |
|
| Q |
249 |
ctactaaagtatgacttatttgaaaggatttaggtttgatttatgagctgaacaccaaaatttcttcgccttccttctaatata |
332 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1820975 |
ctactaaagtatgacttgtttgaaaggatttaggtttgatttatgagctgaacaccaaaatttcttcgccttccttctaatata |
1821058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 50 - 195
Target Start/End: Original strand, 1841039 - 1841184
Alignment:
| Q |
50 |
cggagaaccatcaccggcatgacaacaacatttttgtcttgtttctcgagttcttcaacacgttctttaagttgtttcacataatcaattgcttctcgaa |
149 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1841039 |
cggagaaccatcaccggcgtgacaccaacatttttgtcttgtttctcgagctcatcaacacgttctttaagttgtttcacataatcaattgcttctcgaa |
1841138 |
T |
|
| Q |
150 |
gtattgaagccttgtccatctataaagaaggaatcgtaaaatttta |
195 |
Q |
| |
|
|||||||||||||||| |||||||| | ||||| |||||||||| |
|
|
| T |
1841139 |
gtattgaagccttgtctgtctataaaaatggaatattaaaatttta |
1841184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 1840975 - 1841024
Alignment:
| Q |
1 |
acaacttgtttcaccagaatttgtgtcttcattgtaattattgattccac |
50 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||| |||||| |
|
|
| T |
1840975 |
acaacttgtttcactcgaattcgtgtcttcattgtaattattgtttccac |
1841024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 1820720 - 1820753
Alignment:
| Q |
1 |
acaacttgtttcaccagaatttgtgtcttcattg |
34 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |
|
|
| T |
1820720 |
acaacttgtttcaccagaatttgtgtattcattg |
1820753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University