View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17544_low_2 (Length: 255)

Name: NF17544_low_2
Description: NF17544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17544_low_2
NF17544_low_2
[»] chr3 (2 HSPs)
chr3 (142-233)||(4284502-4284593)
chr3 (23-90)||(4284383-4284450)
[»] chr7 (1 HSPs)
chr7 (34-90)||(10234324-10234380)
[»] chr6 (1 HSPs)
chr6 (37-84)||(28973359-28973406)


Alignment Details
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 142 - 233
Target Start/End: Original strand, 4284502 - 4284593
Alignment:
Q  142 caagatcaaataatgaagaaaaggaagaactttcagaagtcataaaatatggtatgactcgtgcgcccaagcacacgacccgttcgtggatc 233  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||    
T  4284502 caagatcaaataatgaagaaaaggaagaactttcagaagtcagaaaatatggtatgactcgtgcgcccaagcacacgacccatgcgtggatc 4284593  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 4284383 - 4284450
Alignment:
Q  23 tgtcatctgctatgataagtcctaatttatagtgtttttagtctttgaattaaataaaatttgtggga 90  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4284383 tgtcatctgctctgataagtcctaatttatagtgtttttagtctttgaattaaataaaatttgtggga 4284450  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 10234324 - 10234380
Alignment:
Q  34 atgataagtcctaatttatagtgtttttagtctttgaattaaataaaatttgtggga 90  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10234324 atgataagtcctaatttatagtgtttttagtctttgagttaaataaaatttgtggga 10234380  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 37 - 84
Target Start/End: Original strand, 28973359 - 28973406
Alignment:
Q  37 ataagtcctaatttatagtgtttttagtctttgaattaaataaaattt 84  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28973359 ataagtcctaatttatagtgtttttagtctttgaattaagtaaaattt 28973406  T

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