View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17545_high_2 (Length: 305)
Name: NF17545_high_2
Description: NF17545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17545_high_2 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 12 - 305
Target Start/End: Complemental strand, 51996398 - 51996119
Alignment:
| Q |
12 |
atctatcacatttggtttgttccaggttggtcaacaaacaagcttatcacttgcaaagaatgccaaaaatttgcataccttagatttatcatggtgtcga |
111 |
Q |
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| T |
51996398 |
atctatcacatttggtttgttccaggttggccaacaaacaagcttatcacttgcaaagaatgccaaaaatttgcataccttagatttatcatggtgtcga |
51996299 |
T |
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| Q |
112 |
aacttgacagacaatgagtttggtttaattgtcgatagctgctcgtcgttgaggttccttaaactttttggatgctcacaggtaaataaatttattaaag |
211 |
Q |
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| T |
51996298 |
aacttgacagacaatgagtttggtttaattgtcgatagctgctcgtcattgaggttccttaaactttttggatgctcacaggtaaataaatttattaa-- |
51996201 |
T |
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| Q |
212 |
gaatttctagtgatcaatttcatgtaaccatgaagaaatatatatgcttagttgagtctttgtacgaagacatcagttgttttgttggggaaga |
305 |
Q |
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| T |
51996200 |
------------atcaatttcatgtagtcatgaagaaatatatatgtttcgttgagtctttgtacgaagaaatcagttgttttgttggggaaga |
51996119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 20 - 199
Target Start/End: Original strand, 51990338 - 51990517
Alignment:
| Q |
20 |
catttggtttgttccaggttggtcaacaaacaagcttatcacttgcaaagaatgccaaaaatttgcataccttagatttatcatggtgtcgaaacttgac |
119 |
Q |
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| T |
51990338 |
catttggtttgttccaggttggccaacaaacaaccttgtcatttgcaaacaaggccagaaatttgcataccttagatctatcatggcgtcaaaatttaac |
51990437 |
T |
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| Q |
120 |
agacaatgagtttggtttaattgtcgatagctgctcgtcgttgaggttccttaaactttttggatgctcacaggtaaata |
199 |
Q |
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| T |
51990438 |
agacaatgagtttggtttaattgtcgatagctgcttgtcactgaggttcctgaaacttctgggatgcttacaggtaaata |
51990517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 52008910 - 52008727
Alignment:
| Q |
19 |
acatttggtttgttccaggttggtcaacaaacaagcttatcacttgcaaagaatgccaaaaatttgcataccttagatttatcatggtgtcgaaacttga |
118 |
Q |
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||||||||||| |||||||||| ||||| |||| ||||||||||||||| ||||| ||||| ||||||||||||||| | |||||||||||||| |||| |
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| T |
52008910 |
acatttggtttaatccaggttggccaacagacaaccttatcacttgcaaacaatgcaaaaaaattgcataccttagatctgtcatggtgtcgaaatttga |
52008811 |
T |
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| Q |
119 |
cagacaatgagtttggtttaattgtcgatagctgctcgtcgttgaggttccttaaactttttggatgctcacaggtaaataaat |
202 |
Q |
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| T |
52008810 |
cagacaacgagtttggtttaattgtggatagctgtttgtcgctaaggtcacttaaacttttcggatgttcacaggtaaataaat |
52008727 |
T |
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