View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17545_high_5 (Length: 283)

Name: NF17545_high_5

Description: NF17545

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF17545_high_5

[»] chr8 (1 HSPs)

Target: chr8 (Bit Score: 183; Significance: 5e-99; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 183; E-Value: 5e-99

Query Start/End: Original strand, 34 - 283

Target Start/End: Original strand, 27125200 - 27125446

Alignment:

Q	34	aaaatattaggttgaaaataagaggtagaatgtgccaattgtatatgaatcggctgaacctattcaggtcctaccgattcaatactcgattggtattgat	133	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	27125200	aaaatattaggttgaaaataggaggtagaatgtgccaattgtatatgaatcagctgaacctattgaggtc--accgattcaatactcgattggtcttgat	27125297	T

Q	134	taacaatatctacctaatttgtggttccttgcacaccttgttggtgaccgaattgtcaccaaaatcagttgaagctttgtgatcctacacagttacaact	233	Q
		\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	27125298	taacaatgtctacataatttgtggttccttgtacaccttgttggtgaatgaattgtcaccaaaatcagttgaagc-ttgtgatactacacagttacaact	27125396	T

Q	234	atggtggtcctacacagtttgaggtttattattctgagagctttattatc	283	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|
T	27125397	atggtggtcctacacagtttgatgtttattattctgaaagctttattatc	27125446	T

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