View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17545_low_1 (Length: 482)
Name: NF17545_low_1
Description: NF17545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17545_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 21 - 479
Target Start/End: Original strand, 33789189 - 33789650
Alignment:
| Q |
21 |
tatcgtctttcttttcatcaactgtgactttgtcaggttgagaagtaggagctaattcagttctgataaacttttttctagctgcaatttttgctcttct |
120 |
Q |
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| T |
33789189 |
tatcgtctttcttttcatcaactgtgactttgtcaggttgagaagtaggagctaattcagttctgataaacttttttctagctgcaatttttgctcttct |
33789288 |
T |
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| Q |
121 |
agcggataaaattgtagatccttcatccgaaattcctattccactatgttgtttcacatctttcttaacatctgctacatcagcaagttcagaagcagga |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33789289 |
agcggataaaattgtagatccttcatccgaaattcctattccactatgttgtttcacatctttcttaacatctgctacatcagcaagttcagaagcagga |
33789388 |
T |
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| Q |
221 |
acttttggttcttgtggagtgatagggagttcttcttgcatctcctttggc---tcttgaatcttttttcctcttcttacatatttgtaaacttttgtag |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33789389 |
acttttggttcttgtggagtgatagggagttcttcttgcatctcctttggctcttcttgaatcttttttcctcttcttacatatttgtaaacttttgtaa |
33789488 |
T |
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| Q |
318 |
aagctgttttggccttttttgcatcggattttgaagaggattgagagttcttccnnnnnnnagttaccaatgaagttgaaggaacattttcagctgactt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
33789489 |
aagctgttttggccttttttgcatcggattttgaagaggattgagagttcttccttattttagttaccaatgaagttgaaggaacattttcagctgactt |
33789588 |
T |
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| Q |
418 |
aacacttgttccttcagaggggtgaagtttatccctcaatactatccaagaattatctaccc |
479 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33789589 |
aacacttgttccttcagaggggtgaagtttatccctcaatactatccaagaattatctaccc |
33789650 |
T |
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