View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17545_low_14 (Length: 236)
Name: NF17545_low_14
Description: NF17545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17545_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 13097693 - 13097914
Alignment:
| Q |
1 |
tatggataccactactttaaaaggacaaaattaatgttcaaccatcacttctcatttcatttatctcttatcatttgttgcatnnnnnnntttctctcac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||| |
|
|
| T |
13097693 |
tatggataccactactttaaaaggacaacattaatgttcaaccatcacttctcatttcatttctctcttagcatttgttgcataaaaaaatttctctcac |
13097792 |
T |
|
| Q |
101 |
atagaagaaactaaaaactatggggtacttaacatctttgttgactttcatttttatttttgctgatgtggtgttctatatgacaaaaggtgaaccacta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13097793 |
atagaagaaactaaaaactatggggtacttaagttctttgttgactttcatttttatttttgctgatgtggtgttctatatgacaaaagatgaaccacta |
13097892 |
T |
|
| Q |
201 |
gttccagcattgttcatctttg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
13097893 |
gttccagcattgttcatctttg |
13097914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 13094639 - 13094692
Alignment:
| Q |
98 |
cacatagaagaaactaaaaactatggggtacttaacatctttgttgactttcat |
151 |
Q |
| |
|
||||||||||||||||| || ||||| |||||||| ||||||||||||||||| |
|
|
| T |
13094639 |
cacatagaagaaactaataaatatggagtacttaagttctttgttgactttcat |
13094692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University