View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17545_low_15 (Length: 233)
Name: NF17545_low_15
Description: NF17545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17545_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 36684022 - 36683807
Alignment:
| Q |
1 |
cagcacgatgtttaaagtgaatgacgggaagaaggatgtctacgactttggaagtgtgctttttgaactgattacaggcaaaacatataacgaacttact |
100 |
Q |
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| T |
36684022 |
cagcacgatgtttaaagtgaatgacgggaagaaggatgtctacgactttggaagtgtgctttttgaactgattacaggaaaaacatataacgaactgact |
36683923 |
T |
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| Q |
101 |
cgttcatccaccaccactaatctctatgataacccttcgaatttttataacgccattgataaatctctgcctgggcaaggatttgaaaacggagtatgtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36683922 |
cgttcatccaccaccactaatctctatgataacccttcaaatttttataatgccattgataaatctctgcctgggcaaggatttgaaaatggagtatgtg |
36683823 |
T |
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| Q |
201 |
ctctcctaaagattgc |
216 |
Q |
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|||||||||||||||| |
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| T |
36683822 |
ctctcctaaagattgc |
36683807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 7 - 216
Target Start/End: Complemental strand, 36673588 - 36673379
Alignment:
| Q |
7 |
gatgtttaaagtgaatgacgggaagaaggatgtctacgactttggaagtgtgctttttgaactgattacaggcaaaacatataacgaacttactcgttca |
106 |
Q |
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| T |
36673588 |
gatgtttaaggtggacgacgggaagaaggatgtctacgactttggaagtgtgctttttgaattgatgacagggaaaacatataatgaattgtcgcgttca |
36673489 |
T |
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| Q |
107 |
tccaccaccactaatctctatgataacccttcgaatttttataacgccattgataaatctctgcctgggcaaggatttgaaaacggagtatgtgctctcc |
206 |
Q |
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| T |
36673488 |
tctgacactactaatctatgtggtaaccctttgagtttttataacgtcattgataaatctttgaccggggaaggacttgaaaatgaagtttgtactctca |
36673389 |
T |
|
| Q |
207 |
taaagattgc |
216 |
Q |
| |
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| T |
36673388 |
ttaagattgc |
36673379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 7 - 216
Target Start/End: Complemental strand, 36676343 - 36676134
Alignment:
| Q |
7 |
gatgtttaaagtgaatgacgggaagaaggatgtctacgactttggaagtgtgctttttgaactgattacaggcaaaacatataacgaacttactcgttca |
106 |
Q |
| |
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||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||| ||| | | |||||| |
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| T |
36676343 |
gatgtttaaggtgaacgacgggaagaaggatgtctacgactttggaagtgtgctttttgaattgatgacagggaaaacatataatgaattgtcgcgttca |
36676244 |
T |
|
| Q |
107 |
tccaccaccactaatctctatgataacccttcgaatttttataacgccattgataaatctctgcctgggcaaggatttgaaaacggagtatgtgctctcc |
206 |
Q |
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|| ||| |||||||| | || |||||||| || ||||||||| | |||||||||||| || | ||| ||||| ||||||| | ||| ||| ||||| |
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| T |
36676243 |
tctgacactactaatctatgtggtaaccctttgagtttttataatgttattgataaatctttgaccggggaaggacttgaaaatgaagtttgtactctca |
36676144 |
T |
|
| Q |
207 |
taaagattgc |
216 |
Q |
| |
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| |||||||| |
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| T |
36676143 |
ttaagattgc |
36676134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 23 - 216
Target Start/End: Complemental strand, 36695856 - 36695663
Alignment:
| Q |
23 |
gacgggaagaaggatgtctacgactttggaagtgtgctttttgaactgattacaggcaaaacatataacgaacttactcgttcatccaccaccactaatc |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||| ||| | | |||||||| ||| ||||||| |
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| T |
36695856 |
gacgggaagaaggatgtctacgactttggaagtgtgctttttgaattgatgacagggaaaacatataatgaattgtcgcgttcatctgacactactaatc |
36695757 |
T |
|
| Q |
123 |
tctatgataacccttcgaatttttataacgccattgataaatctctgcctgggcaaggatttgaaaacggagtatgtgctctcctaaagattgc |
216 |
Q |
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| | || |||||||| || ||||||||| | |||||||||||| || | ||| ||||| ||||||| | ||| ||| ||||| | |||||||| |
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| T |
36695756 |
tatgtggtaaccctttgagtttttataatgttattgataaatctttgaccggggaaggacttgaaaatgaagtttgtactctcattaagattgc |
36695663 |
T |
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