View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17545_low_3 (Length: 332)
Name: NF17545_low_3
Description: NF17545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17545_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 36233323 - 36233032
Alignment:
| Q |
18 |
agaggttcaattcaaccactagcattgaacatatttcttcttttatacaatgtgacattattttctatatattactttcaaatcaaaatatagctggagt |
117 |
Q |
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| T |
36233323 |
agaggttcaattcaaccactagcattgaacatatttcttcttttatacaatgtgacattattttctatatattacttccaaatcaaaatatagctggagt |
36233224 |
T |
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| Q |
118 |
gttgatttgtcctttacaaccttgccttttaagcacaccaaaccaaatttgtaaccatatatattttctttcttcaattcccttttggactctcctccaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| || |
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| T |
36233223 |
gttgatttgtcctttacaaccttgccttttaagcacaccaaaccaaatttgtaaccaaatatattttctttcttcaattcccctttggactctccatcac |
36233124 |
T |
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| Q |
218 |
aatttctctatctatcctttccataaattaactcttatacatgtttcagatagaatgcttgaatgctcagagaaaggtaagaaaactctttcaaa |
312 |
Q |
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||||||| |||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
36233123 |
---ttctctagctattatttccatacattaactcttatacatgtttcagatagcatgcttgaatgtccagagaaaggtaagaaaactctttcaaa |
36233032 |
T |
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