View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17546_high_10 (Length: 288)
Name: NF17546_high_10
Description: NF17546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17546_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 18751568 - 18751296
Alignment:
| Q |
1 |
attattcaaataaattactgttctcattattgtttaactaacaattgaattcaacttggcattttatgttaatttttcctgatttaggaattcactgaga |
100 |
Q |
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| T |
18751568 |
attattaaaataaattattgttctcattatggtttaactaacaattgaattcaacttggcattctatgttaatttttcttgatttaggaactcactgaga |
18751469 |
T |
|
| Q |
101 |
tcgtatctcatcccattatgttgannnnnnnnc-caggtataagttattttgaagtctgtcggataccgaatcacaaatgtctaaagtctagaattctca |
199 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
18751468 |
tcgtatctcatcccattatgttgatttcttttttcaggtataagttattttgaagtctgtcggataccgaatcacaaatgtctaaagtctagaactctca |
18751369 |
T |
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| Q |
200 |
attatagtttaaacttccccctttttgtaaaatgtggctgattgtatttaacgttatatttcaatttatctct |
272 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
18751368 |
attatagtttaaacttctccctttttgtaaaatgtggctgattgtatttgacgttatatttcaatttatctct |
18751296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 260
Target Start/End: Complemental strand, 22313887 - 22313787
Alignment:
| Q |
161 |
ggataccgaatcacaaatgtctaaagtctagaattctcaattatagtttaaacttccccctttttgtaaaatgtggctga--ttgtatttaacgttatat |
258 |
Q |
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||||| || ||||||| ||| || |||||||| ||| || ||||||||| ||||| |||| |||||||||||||||||| |||||||||| ||| ||| |
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| T |
22313887 |
ggatatcggatcacaagtgtttatagtctaga-ttcccagttatagttttaacttttccctctttgtaaaatgtggctgattttgtatttaaagttctat |
22313789 |
T |
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| Q |
259 |
tt |
260 |
Q |
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|| |
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| T |
22313788 |
tt |
22313787 |
T |
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