View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17546_low_11 (Length: 342)
Name: NF17546_low_11
Description: NF17546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17546_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 16 - 300
Target Start/End: Complemental strand, 235709 - 235421
Alignment:
| Q |
16 |
ttagcaaccaacttcat---tcccgacatcatcacacccgaagacagagaaacaataagaccaccatcctcactcgatggccatgtcgtcagccacttca |
112 |
Q |
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| T |
235709 |
ttagcaaccaacttcatcattcccgacatcatcacacccgaagacagagaaacaataagaccaccgtcctcacccgatggccatgtcgtcagccacttca |
235610 |
T |
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| Q |
113 |
atcctaaaaaagtggtcgctgtcatgtcccatggaaaaaa-ccctatcattgtcggctcattgaactgtactggagaagaaccagtagtgttgaaatgtg |
211 |
Q |
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| T |
235609 |
atcctaaaatagtggtcgctgtcatgtcccatggaaaaaaaccctatcattgtcggctcgttgaactgtactggagaagaaccagtagtgttgaaatgtg |
235510 |
T |
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| Q |
212 |
gcgatgagaattggaaacttattcctggaatgtcggcctatttaggagacattcgtgttttcaaaggccagccttatgtggttgataaa |
300 |
Q |
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| T |
235509 |
gcgatgagaattggaaacttattcctggaatgtcggcctatttaggagacatccgtgttttcaaaggccagccttatgtggttgataaa |
235421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 143 - 321
Target Start/End: Original strand, 8814023 - 8814204
Alignment:
| Q |
143 |
atggaaaaaaccctatcattgtcggctcattgaactgtactggagaagaacca---gtagtgttgaaatgtggcgatgagaattggaaacttattcctgg |
239 |
Q |
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| T |
8814023 |
atggaaataaacctatcatcgtcgcctcatttaactgtaaaggagaagaacaactggtagtgttcaaatgcggcgatgagaattggaagtttattcctga |
8814122 |
T |
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| Q |
240 |
aatgtcggcctatttaggagacattcgtgttttcaaaggccagccttatgtggttgataaaactgggcggactgttactgtt |
321 |
Q |
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| T |
8814123 |
aatgtcagtctactttggagatatccgtgctttcaaaggtcagtgttatgtggtagacaaaactggacagactgttactgtt |
8814204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 193 - 321
Target Start/End: Original strand, 251114 - 251242
Alignment:
| Q |
193 |
ccagtagtgttgaaatgtggcgatgagaattggaaacttattcctggaatgtcggcctatttaggagacattcgtgttttcaaaggccagccttatgtgg |
292 |
Q |
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| T |
251114 |
ccagtagtgttcaaatgcggtgatgagaattggaaggctatacctaacatgtcggcttattttggagacatttgtgttttcaaaggccgaccttatgcgg |
251213 |
T |
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| Q |
293 |
ttgataaaactgggcggactgttactgtt |
321 |
Q |
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| T |
251214 |
tagacaatactggacggacagttactgtt |
251242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 305
Target Start/End: Complemental strand, 247267 - 247148
Alignment:
| Q |
186 |
agaagaaccagtagtgttgaaatgtggcgatgagaattggaaacttattcctggaatgtcggcctatttaggagacattcgtgttttcaaaggccagcct |
285 |
Q |
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|||| |||||| | |||||||||| || |||||||||||||| ||| ||| ||||||| ||||||||||||||| ||||||||||||||| ||| |
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| T |
247267 |
agaacaaccagcattgttgaaatgcggtgatgagaattggaaggctatacctcacatgtcggtttatttaggagacatttgtgttttcaaaggccgacct |
247168 |
T |
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| Q |
286 |
tatgtggttgataaaactgg |
305 |
Q |
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|||| ||| || |||||||| |
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| T |
247167 |
tatgcggtagacaaaactgg |
247148 |
T |
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