View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17546_low_13 (Length: 296)
Name: NF17546_low_13
Description: NF17546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17546_low_13 |
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| [»] chr1 (3 HSPs) |
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| [»] chr6 (3 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 149 - 296
Target Start/End: Original strand, 38903799 - 38903947
Alignment:
| Q |
149 |
gttcatgtaaattgaacaacgacaatgtttgatgtgt-gttcatatgattgttaatgaccaatgatgataaatcataaggcttgtttctcaaaacattcg |
247 |
Q |
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| T |
38903799 |
gttcatgtaaattgaacaatgacaatttttgatgttttgtttatttgattataaatgaccaatgatgataaatc-taaggcttgtttctcaaaacattcg |
38903897 |
T |
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| Q |
248 |
cagtggccacccaagaactttcg-cgttcgccaggcttgagagtttatgc |
296 |
Q |
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| T |
38903898 |
cagtggccgcctaagaactttcgcctttcgccgggcttgagagttaatgc |
38903947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 207 - 289
Target Start/End: Original strand, 38904194 - 38904275
Alignment:
| Q |
207 |
caatgatgataaatcataaggcttgtttctcaaaacattcgcagtggccacccaagaactttcgcgttcgccaggcttgagag |
289 |
Q |
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| T |
38904194 |
caatgatgataaatc-taaggcttgtttctcaaaacattcgcagtggctgcctaatagctttcgccttcgccaggcttgagag |
38904275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 224 - 289
Target Start/End: Original strand, 38903516 - 38903581
Alignment:
| Q |
224 |
aaggcttgtttctcaaaacattcgcagtggccacccaagaactttcgcgttcgccaggcttgagag |
289 |
Q |
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| T |
38903516 |
aaggcttgtttctcaaaacattcgcagtggccgcctaagagctttcgccttcgccaggcttgagag |
38903581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 224 - 296
Target Start/End: Original strand, 33032186 - 33032258
Alignment:
| Q |
224 |
aaggcttgtttctcaaaacattcgcagtggccacccaagaactttcgcgttcgccaggcttgagagtttatgc |
296 |
Q |
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| T |
33032186 |
aaggcttgtttctcaaaacattcgcagtggccgcctaagaactttcgccttcgccaggcttgagagtttatgc |
33032258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 193 - 296
Target Start/End: Original strand, 33032427 - 33032530
Alignment:
| Q |
193 |
tgattgttaatgaccaatgatgataaatcataaggcttgtttctcaaaacattcgcagtggccacccaagaactttcg-cgttcgccaggcttgagagtt |
291 |
Q |
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| T |
33032427 |
tgattgtaaatgaccaatgatgataa-tattaaggcttgtttctcaaaacattcgcagtggccgcctaagagctttcgcctttcgccgggcttgagagtt |
33032525 |
T |
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| Q |
292 |
tatgc |
296 |
Q |
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|||| |
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| T |
33032526 |
aatgc |
33032530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 230 - 296
Target Start/End: Original strand, 33050800 - 33050867
Alignment:
| Q |
230 |
tgtttctcaaaacattcgcagtggccacccaagaactttcg-cgttcgccaggcttgagagtttatgc |
296 |
Q |
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| T |
33050800 |
tgtttctcaaaacattcgcagtggccgcctaagagctttcgcctttcgcctagcttgagagttaatgc |
33050867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 223 - 296
Target Start/End: Original strand, 43522007 - 43522080
Alignment:
| Q |
223 |
taaggcttgtttctcaaaacattcgcagtggccacccaagaactttcgcgttcgccaggcttgagagtttatgc |
296 |
Q |
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| T |
43522007 |
taaggcttgtttctcaaaacattcgcagtggccgcctaagaactttcgccttcgccaggcttgagagttaatgc |
43522080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 255
Target Start/End: Original strand, 43522193 - 43522230
Alignment:
| Q |
218 |
aatcataaggcttgtttctcaaaacattcgcagtggcc |
255 |
Q |
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| T |
43522193 |
aatcctaaggcttgtttctcaaaacattcgcattggcc |
43522230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 207 - 289
Target Start/End: Complemental strand, 53017295 - 53017214
Alignment:
| Q |
207 |
caatgatgataaatcataaggcttgtttctcaaaacattcgcagtggccacccaagaactttcgcgttcgccaggcttgagag |
289 |
Q |
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| T |
53017295 |
caatgatgataatcca-aaggcttgtttctcaaaacattcgcagtggccgcctaagagctttcgccttcgccaggcttgagag |
53017214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 223 - 289
Target Start/End: Complemental strand, 53017480 - 53017414
Alignment:
| Q |
223 |
taaggcttgtttctcaaaacattcgcagtggccacccaagaactttcgcgttcgccaggcttgagag |
289 |
Q |
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| T |
53017480 |
taaggcttgtttctcaaaacattcgcagtggccgaccaagagctttcgccttcgccaggcttgagag |
53017414 |
T |
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