View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17546_low_16 (Length: 275)
Name: NF17546_low_16
Description: NF17546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17546_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 31331823 - 31331571
Alignment:
| Q |
18 |
aattgagcatctcaaatatgaagttaaggacttttttgtcatcaaggttttgagtttattcatttttccatgttgggaaattgctcacatggcaagctga |
117 |
Q |
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| T |
31331823 |
aattgagcatctcaaatatgaagttaaggacttttttgtcatcaaggttttgagtttattcatttttccatgttgggaaattgctcacatggcaagctga |
31331724 |
T |
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| Q |
118 |
caaaaatggtttatgtgtattggctaaaagaaggaacaatagttatctattgagaattttgggtccatccttaaatgtgacccctacatcccatgctctg |
217 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31331723 |
caaaaatgggttatgtgtattggctaaaagaaggaacaatagttatctattgagaattttgggtccatccttaaatgtgacccctacatcccatgctctg |
31331624 |
T |
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| Q |
218 |
aaagttatacacatcagggcctaaatccaaattgtctagggttttcttctcac |
270 |
Q |
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| T |
31331623 |
aaagttatacacatcagggcctaaatccaaattgtctagggttttcttctcac |
31331571 |
T |
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