View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17546_low_17 (Length: 259)
Name: NF17546_low_17
Description: NF17546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17546_low_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 45390937 - 45391131
Alignment:
| Q |
1 |
tctgaaccctctccaaaaccttcaatggctccgctttctctcctttcacaaccaccgtatgagacttgcaatcagttatcacttcttcaacacctggaaa |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45390937 |
tctgaaccctttccaaaaccttcaatggctccgctttctctcctttcacaaccaccgtatgagacttgcaatcagttatcacttcttcaacacctggaaa |
45391036 |
T |
|
| Q |
101 |
atctttcaacgaccgacgaactttccgagcacagctttcacaatgcatgaaaactttcagcaaaatctctgccggaggtggcgcaggaacagcag |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45391037 |
atctttcaacgaccgacgaactttccgagcacagctttcacaatgcatgaaaactttcagcaaaatctctgccggaggtggcgcaggaacagcag |
45391131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 45386568 - 45386745
Alignment:
| Q |
1 |
tctgaaccctctccaaaaccttcaatggctccgctttctctcctttcacaaccaccgtatgagacttgcaatcagttatcacttcttcaacacctggaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
45386568 |
tctgaaccctctccaaaaccttcaatggctctgctttctctcctttcacaaccaccatatgagatttgcaatcagttatcacttcttcaacacctggaaa |
45386667 |
T |
|
| Q |
101 |
atctttcaacgaccgacgaactttccgagcacagctttcacaatgcatgaaaactttcagcaaaatctctgccggagg |
178 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
45386668 |
atctttcaatgaccgacgaactttccgagcacagccttcacaatgcatgaaaactctcagcaaaatctctgctggagg |
45386745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 734545 - 734739
Alignment:
| Q |
1 |
tctgaaccctctccaaaaccttcaatggctccgctttctctcctttcacaaccaccgtatgagacttgcaatcagttatcacttcttcaacacctggaaa |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
734545 |
tctgaaccctttccaaaaccttcaatggctccgctttctctcctttcacaaccaccgtatgagacttgcaatcagctatcacttcttcaacacctggaaa |
734644 |
T |
|
| Q |
101 |
atctttcaacgaccgacgaactttccgagcacagctttcacaatgcatgaaaactttcagcaaaatctctgccggaggtggcgcaggaacagcag |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
734645 |
atctttcaacgaccgacgaactttccgagcacagctttcacaatgcatgaaaactttcagcaaaatctctgccggaggtggcgcaggaacagcag |
734739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 40578002 - 40578088
Alignment:
| Q |
17 |
aaccttcaatggctccgctttctctcctttcacaaccaccgtatgagacttgcaatcagttatcacttcttcaacacctggaaaatc |
103 |
Q |
| |
|
|||||||||||| |||||||| |||||||| |||| ||| | ||||| ||||||||||| | ||| |||||||| |||| |||||| |
|
|
| T |
40578002 |
aaccttcaatggatccgctttttctcctttaacaataaccttgtgagatttgcaatcagtaaccacatcttcaacccctgaaaaatc |
40578088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 162
Target Start/End: Original strand, 40578165 - 40578235
Alignment:
| Q |
92 |
acctggaaaatctttcaacgaccgacgaactttccgagcacagctttcacaatgcatgaaaactttcagca |
162 |
Q |
| |
|
|||||||||| |||| | || ||||||||||| |||||||| | ||||||||||||||| ||||| |||| |
|
|
| T |
40578165 |
acctggaaaacctttgagtgaacgacgaactttacgagcacaaccttcacaatgcatgaagactttaagca |
40578235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University