View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17546_low_18 (Length: 238)
Name: NF17546_low_18
Description: NF17546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17546_low_18 |
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| [»] chr2 (8 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 5576007 - 5576228
Alignment:
| Q |
17 |
aagtaattgtttatgtaatcattactgccaatattcacataatacaagcatttgctaaggtattcttgagctttgccaataccttcaagtctgctagcaa |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5576007 |
aagtaattgtttatgtaatcattactgccaatattcacataatacaagcatttgctaaggtattcttgagctttgtcaataccttcaagtctgctagcaa |
5576106 |
T |
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| Q |
117 |
ttcgagaaactataactttgtgattttctaactgtaatcccaaactgataacgaaaccctgcacagaaataatgttattttggtggcatatgtatgagca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5576107 |
ttcgagaaactataactttgtgattttctaactgtaatcccaaactgataacaaaaccctgcacagaaataatgttattttggtggcatatgtatgagca |
5576206 |
T |
|
| Q |
217 |
atgtaacaaaaatacacaagtc |
238 |
Q |
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|||| ||||||||||||||||| |
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| T |
5576207 |
atgtgacaaaaatacacaagtc |
5576228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 17 - 231
Target Start/End: Original strand, 5572976 - 5573190
Alignment:
| Q |
17 |
aagtaattgtttatgtaatcattactgccaatattcacataatacaagcatttgctaaggtattcttgagctttgccaataccttcaagtctgctagcaa |
116 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||| ||||||||||||||| |
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| T |
5572976 |
aagtaattgtttatgtaatcgttacttccaatattcacataatacaagcatttgttaaggtattgttgagctttgtcaatacctccaagtctgctagcaa |
5573075 |
T |
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| Q |
117 |
ttcgagaaactataactttgtgattttctaactgtaatcccaaactgataacgaaaccctgcacagaaataatgttattttggtggcatatgtatgagca |
216 |
Q |
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|| |||||||||||||| |||||||| ||||||||||||||| || ||| | ||||||| || || ||||||||||||| | ||||| |||||||| | |
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| T |
5573076 |
tttgagaaactataactctgtgatttcttaactgtaatcccaagctaatagcataaccctgtacggacataatgttatttttgcggcatgtgtatgagta |
5573175 |
T |
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| Q |
217 |
atgtaacaaaaatac |
231 |
Q |
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||||||||||||||| |
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| T |
5573176 |
atgtaacaaaaatac |
5573190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 17 - 231
Target Start/End: Original strand, 5592713 - 5592927
Alignment:
| Q |
17 |
aagtaattgtttatgtaatcattactgccaatattcacataatacaagcatttgctaaggtattcttgagctttgccaataccttcaagtctgctagcaa |
116 |
Q |
| |
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|||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||| ||| ||||| |||||||| |
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| T |
5592713 |
aagtaattatttatgtaatcattactgccaatatgcacataatacaagcatttgttaaggtattcttgagctttgtcaattcctccaagttggctagcaa |
5592812 |
T |
|
| Q |
117 |
ttcgagaaactataactttgtgattttctaactgtaatcccaaactgataacgaaaccctgcacagaaataatgttattttggtggcatatgtatgagca |
216 |
Q |
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|| |||||||||||||| |||||||| ||||||||||||||| || ||| | ||||||| || || ||||||||||||| | ||||| |||||||| | |
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| T |
5592813 |
tttgagaaactataactctgtgatttcttaactgtaatcccaagctaatagcataaccctgtacggacataatgttatttttgcggcatgtgtatgagta |
5592912 |
T |
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| Q |
217 |
atgtaacaaaaatac |
231 |
Q |
| |
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||||||||||||||| |
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| T |
5592913 |
atgtaacaaaaatac |
5592927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 17 - 177
Target Start/End: Original strand, 5586487 - 5586647
Alignment:
| Q |
17 |
aagtaattgtttatgtaatcattactgccaatattcacataatacaagcatttgctaaggtattcttgagctttgccaataccttcaagtctgctagcaa |
116 |
Q |
| |
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|||||||| ||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||| || || | ||||||||||||||| |
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| T |
5586487 |
aagtaattatttatgtaatcattactgccaatatgcacataatataagcatttattaaggtattcttgagctttgttaagacttccaagtctgctagcaa |
5586586 |
T |
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| Q |
117 |
ttcgagaaactataactttgtgattttctaactgtaatcccaaactgataacgaaaccctg |
177 |
Q |
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|| |||||| ||||||||||||||||| ||||||||||||||||||||| || |||||||| |
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| T |
5586587 |
tttgagaaattataactttgtgattttttaactgtaatcccaaactgatgacaaaaccctg |
5586647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 56 - 230
Target Start/End: Original strand, 5582176 - 5582350
Alignment:
| Q |
56 |
taatacaagcatttgctaaggtattcttgagctttgccaataccttcaagtctgctagcaattcgagaaactataactttgtgattttctaactgtaatc |
155 |
Q |
| |
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||||||||||||||| ||||||||| || || || |||||||| ||||||||||||||||| |||||||||| ||||||||||| | ||||||||||| |
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| T |
5582176 |
taatacaagcatttgttaaggtattgttcagaactgtcaatacctccaagtctgctagcaatttgagaaactattactttgtgattctttaactgtaatc |
5582275 |
T |
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| Q |
156 |
ccaaactgataacgaaaccctgcacagaaataatgttattttggtggcatatgtatgagcaatgtaacaaaaata |
230 |
Q |
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|||| |||||||| ||||||| ||||| |||||||||||||||| ||| | ||| |||| ||||||||||||| |
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| T |
5582276 |
ccaagctgataacagaaccctgtacagacgtaatgttattttggtgacatgtatataagcagtgtaacaaaaata |
5582350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 5613498 - 5613546
Alignment:
| Q |
18 |
agtaattgtttatgtaatcattactgccaatattcacataatacaagca |
66 |
Q |
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|||| |||||||||||||| || |||||||||||||||||||||||||| |
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| T |
5613498 |
agtagttgtttatgtaatcgttgctgccaatattcacataatacaagca |
5613546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 5567420 - 5567468
Alignment:
| Q |
111 |
tagcaattcgagaaactataactttgtgattttctaactgtaatcccaa |
159 |
Q |
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|||||||| ||| ||||||| |||||||||||||| |||||||||||| |
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| T |
5567420 |
tagcaatttgagcaactatagttttgtgattttctatctgtaatcccaa |
5567468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 131
Target Start/End: Complemental strand, 12065362 - 12065255
Alignment:
| Q |
23 |
ttgtttatgtaatcattactgccaatattcacataatacaagcatttgctaaggtattcttgagctttgccaataccttcaagtctgctagcaattcgag |
122 |
Q |
| |
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||||||||||||| ||||| || ||||| |||||| |||| |||||| ||||||||| | || ||| |||||| | |||||||| |||||||| || |
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| T |
12065362 |
ttgtttatgtaat-attacatcctatatttacataacacaaacatttggtaaggtattgctcagttttttcaatacttccaagtctggtagcaatttcag |
12065264 |
T |
|
| Q |
123 |
aaactataa |
131 |
Q |
| |
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||||||||| |
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| T |
12065263 |
aaactataa |
12065255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 36357059 - 36357119
Alignment:
| Q |
17 |
aagtaattgtttatgtaatcattactgccaatattcacataatacaagcatttgctaaggt |
77 |
Q |
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||||||||||| | | ||||||| ||||| ||||||||||||||||| || ||| |||||| |
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| T |
36357059 |
aagtaattgttaaggaaatcattgctgcctatattcacataatacaaacacttgttaaggt |
36357119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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