View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17546_low_2 (Length: 570)
Name: NF17546_low_2
Description: NF17546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17546_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 11 - 385
Target Start/End: Original strand, 55208037 - 55208415
Alignment:
| Q |
11 |
cacagatcatgcacttggaaatctaaattcattgaattgattcattcattcatcatagtataaccaaacaaacaaatgcctctgaccgatttttgagtca |
110 |
Q |
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| T |
55208037 |
cacagatcatgcacttggaaatctaaattcattgaattgattcattcattcatcatagtataaccaaacaaacaaatgcctctgaccgatttttgagtca |
55208136 |
T |
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| Q |
111 |
caaaatctgcatgtggtttattgtttggtgtttaccgcgttccacacactcctctt-aaagctcacactacactataaattaggaagaaaatcatatttc |
209 |
Q |
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| T |
55208137 |
caaaatctgca-gtggtttattgtttggtgtttaccgcgttccacacactcctctttaaagctcacactacactataaattaggaacaaaatcatatttc |
55208235 |
T |
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| Q |
210 |
catttcagt-actcctatttttcttcattcaaaatcatgttctttcaagtcattgccagccacaaacaaacaaaactctctgattcttgctcatgacccg |
308 |
Q |
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| T |
55208236 |
catttcagttactcctatttttcttcattcaaaatcatgttctttcaagtcattgccagccacaaacaaacaaaactctctgattcttgctcatgacccg |
55208335 |
T |
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| Q |
309 |
ccgttaaaccctcaaactaattaaactcctt---ttattattattattgtacgttataatatatgtgggttgagaaacgc |
385 |
Q |
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| T |
55208336 |
ccgttagaccctcaaactaattaaactccttttattattattattattgtacgttataatatatgtgggttgagaaacgc |
55208415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 434 - 547
Target Start/End: Original strand, 55208461 - 55208574
Alignment:
| Q |
434 |
gatctgaatgaatatgtcaactgatgctcatttccttcaggtgaaccaaaacatgccaactcttcattctgatcatgtctatgccaacactaagtataac |
533 |
Q |
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| T |
55208461 |
gatctgaatgaatatgtcaattgatgctcatttccttcaggtgaaccaaaacatgccaactcttcattctgatcatgtctatgccaacactaagtataac |
55208560 |
T |
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| Q |
534 |
aacaatcaacagag |
547 |
Q |
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| T |
55208561 |
aacaatcaacagag |
55208574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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