View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17546_low_3 (Length: 531)
Name: NF17546_low_3
Description: NF17546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17546_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 60 - 511
Target Start/End: Original strand, 32955629 - 32956068
Alignment:
| Q |
60 |
ccgttgacgagaccataacataaccatcacaatcaaaaacatctacatcgtaaaacattgtcgtacacctacatctacatcatcattttttgtcttcttt |
159 |
Q |
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| T |
32955629 |
ccgttgacgagaccataacataaccatcacaatcaaaaacatctacatcgtaaaacattgtcgtacacctacatctacatcatcattttttgtcttcttt |
32955728 |
T |
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| Q |
160 |
ctgttctattatcttaggaatattaagcttatgtcgtcatcatcatcaatatcatcgtaacttctaattccaatgcttcatcttgtgtaatcgtgaacaa |
259 |
Q |
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| T |
32955729 |
ctgttctattaacgtaggaatattaagcttatgtcatcatcat---------------aacttctaattccaatgcttcatcttgtgtaatcgtgaacaa |
32955813 |
T |
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| Q |
260 |
gacttgtgttgagtctccaagaaaggaaattaggaatgccattttctgattctgcatctgaatcatccatgaaacgtagctcattgccatacatttgact |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32955814 |
gacttgtgttgagtctccaagaaaggaaattaggaatgccattttctgattctgcatctgaatcatccatgaaacgtagctcattgccatacatttgact |
32955913 |
T |
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| Q |
360 |
ctgtggttgtgagtaccatgaa---ttgttgttgttgttactgtagaagtttcctgactccattatgccgccgttagtcgcggctgtcgtggcaaccgcg |
456 |
Q |
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| T |
32955914 |
ctgtggttgtgagtaccatgaattgttgttgttgttgttactgtagaagtttcctgactccattatgccaccgttagtcgcagctgtcgtggcaaccgcg |
32956013 |
T |
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| Q |
457 |
gcgtttgctcttctctcttccttcttgtatctaatcccacaagcattgcatagtg |
511 |
Q |
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| T |
32956014 |
gcgttcgctcttctctcttccttcttgtatctaatcccacaagcattgcatagtg |
32956068 |
T |
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Back To:
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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 461 - 508
Target Start/End: Complemental strand, 7723739 - 7723692
Alignment:
| Q |
461 |
ttgctcttctctcttccttcttgtatctaatcccacaagcattgcata |
508 |
Q |
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| T |
7723739 |
ttgctcttctctcttccttcttgaatctgatcccacatgcattgcata |
7723692 |
T |
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