View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17546_low_4 (Length: 434)
Name: NF17546_low_4
Description: NF17546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17546_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 11 - 421
Target Start/End: Original strand, 5122516 - 5122927
Alignment:
| Q |
11 |
acacccctaatataaattataattcatatgatagaggtataaacaacnnnnnnnnntgttaatgtaacattaaaatttgaaaatgaacgataaatatgaa |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5122516 |
acacccctaatataaattataattcatatgatagaggtataaacaacaaaaaaa--tgttaatgtaacattaaaatttgaaaatgaacgataaatatgaa |
5122613 |
T |
|
| Q |
111 |
catannnnnnnn--cattctaaaaaccaactattaaaaaagaataaggggagtattaggttgttgcattaagatatcctagagttt--aaaacaacttaa |
206 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
5122614 |
catatattttttttctttctaaaaaccaactattaaaaaagaataaggggaatattaggttgttgcattaagatatcctagagttttaaaaacaacttaa |
5122713 |
T |
|
| Q |
207 |
tgatttccacaagaaaaaacaacaacttaatgacatataataagctattgtttttaaaattcttggataaatttatgaagtaattacgtcatctttagat |
306 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5122714 |
tgatttccacaagaaaaaacaactacttaatgacatataataagctattgtttttaaact-cttggataaatttatgaagtaattacgtcatctttagat |
5122812 |
T |
|
| Q |
307 |
aagtccaaataaattgtaacactaccacaatttttatgaattacctctatttcttgttacacattgttaattgggaggtcatttgttggatttccctaca |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5122813 |
aagtccaaataaattgtaacactaccacaatttttatgaattacctctatttcctgttacacattgttaattgggaggtcatttgttggatttccctaca |
5122912 |
T |
|
| Q |
407 |
ttggaagtcatttgt |
421 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
5122913 |
ttggaagtcatttgt |
5122927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University