View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17546_low_5 (Length: 434)
Name: NF17546_low_5
Description: NF17546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17546_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 12268471 - 12268889
Alignment:
| Q |
1 |
aatttaaagagttagaaaattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaagattgttacaacttacaaagtatgaaacacattt |
100 |
Q |
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| T |
12268471 |
aatttaaagagttagaaaattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaagattgttacaacgtacaaagtatgaaacacattt |
12268570 |
T |
|
| Q |
101 |
tggaaatgttacaaaatcaccatagcagtaacaatttaacaaatgttacaaggtgagtgagtgagtgttactaaaagtcacaaatgcagtagtggctacc |
200 |
Q |
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| T |
12268571 |
tggaaatgttacaaaatcaccatatcagtaacaatttaacaaatgttacaaggtgagtgagtgagtgttactaaaagtcacaaatgcagtagtggctacc |
12268670 |
T |
|
| Q |
201 |
catccccccatatcaatattttcatttattactaataaattataaattattttatagaatcgtttgctataaaa-aataaaggtctaatgcaaatatctt |
299 |
Q |
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| T |
12268671 |
cat--------atcaatattttcatttattactaataaattataaattattttatagaatcgtttgctataaaaaaataaaggtctaatgcaaatatctt |
12268762 |
T |
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| Q |
300 |
tttgggtgagtcatctgcaaaatctaaaacatcacaaactggagaattttagtccagattcagaaaagataaatagctagaagagttatggtagttagtc |
399 |
Q |
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| T |
12268763 |
tttgggtgagtcatctgcaaaatctaaaacatcacaaactggagaattttagtccagattcagaaaagataaatagctagaagagttatggtagttagtc |
12268862 |
T |
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| Q |
400 |
aagtaaaacaatgcgttgtgatgatgt |
426 |
Q |
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| T |
12268863 |
aagtaaaacaatgcgttgtgatgatgt |
12268889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 157 - 270
Target Start/End: Original strand, 12270163 - 12270276
Alignment:
| Q |
157 |
gtgagtgagtgttactaaaagtcacaaatgcagtagtggctacccatccccccatatcaatattttcatttattactaataaattataaattattttata |
256 |
Q |
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| T |
12270163 |
gtgagtaagtgttacaaaaagtcataaatgtagtagtggctaccaatcaccccatataaatattttcatttatttgcaataaattataaattactttaaa |
12270262 |
T |
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| Q |
257 |
gaatcgtttgctat |
270 |
Q |
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|||||||| ||||| |
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| T |
12270263 |
gaatcgttggctat |
12270276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 17032026 - 17032100
Alignment:
| Q |
1 |
aatttaaagagttagaaaattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaagattgttacaa |
77 |
Q |
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| T |
17032026 |
aatttaaa-agttagaaaattgaaatgtattttaaaaggcaaattataaa-cactaataactaaaagagagttacaa |
17032100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 17562462 - 17562536
Alignment:
| Q |
1 |
aatttaaagagttagaaaattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaagattgttacaa |
77 |
Q |
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|||||||| |||||||||||||||||||| ||||||||| |||||||||| |||||||||| |||||| ||||||| |
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| T |
17562462 |
aatttaaa-agttagaaaattgaaatgtattttaaaaggcaaattataaa-cactaataactaaaagagagttacaa |
17562536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 17030627 - 17030575
Alignment:
| Q |
15 |
gaaaattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaaga |
68 |
Q |
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||||| ||||||||| |||||||||||||||||||| |||||||||| |||||| |
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| T |
17030627 |
gaaaactgaaatgtattttaaaaggaaaattataaa-cactaataactaaaaga |
17030575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 17561063 - 17561011
Alignment:
| Q |
15 |
gaaaattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaaga |
68 |
Q |
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||||| ||||||||| |||||||||||||||||||| |||||||||| |||||| |
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| T |
17561063 |
gaaaactgaaatgtattttaaaaggaaaattataaa-cactaataactaaaaga |
17561011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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